* installing *source* package ‘GBOP2’ ...
** this is package ‘GBOP2’ version ‘0.1.4’
** package ‘GBOP2’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘clang version 21.1.8’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/GBOP2/src'
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -DARMA_DONT_USE_WRAPPER -DSTRICT_R_HEADERS -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c Calculation2_original.cpp -o Calculation2_original.o
Calculation2_original.cpp:2:9: warning: 'ARMA_DONT_USE_WRAPPER' macro redefined [-Wmacro-redefined]
    2 | #define ARMA_DONT_USE_WRAPPER
      |         ^
<command line>:2:9: note: previous definition is here
    2 | #define ARMA_DONT_USE_WRAPPER 1
      |         ^
1 warning generated.
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -DARMA_DONT_USE_WRAPPER -DSTRICT_R_HEADERS -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c Calculation_minimizeN_twolambda_update.cpp -o Calculation_minimizeN_twolambda_update.o
Calculation_minimizeN_twolambda_update.cpp:2:9: warning: 'ARMA_DONT_USE_WRAPPER' macro redefined [-Wmacro-redefined]
    2 | #define ARMA_DONT_USE_WRAPPER
      |         ^
<command line>:2:9: note: previous definition is here
    2 | #define ARMA_DONT_USE_WRAPPER 1
      |         ^
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -DARMA_DONT_USE_WRAPPER -DSTRICT_R_HEADERS -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c Calculation_twoboundaries_jsm.cpp -o Calculation_twoboundaries_jsm.o
Calculation_twoboundaries_jsm.cpp:2:9: warning: 'ARMA_DONT_USE_WRAPPER' macro redefined [-Wmacro-redefined]
    2 | #define ARMA_DONT_USE_WRAPPER
      |         ^
<command line>:2:9: note: previous definition is here
    2 | #define ARMA_DONT_USE_WRAPPER 1
      |         ^
1 warning generated.
1 warning generated.
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -DARMA_DONT_USE_WRAPPER -DSTRICT_R_HEADERS -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c RcppExports.cpp -o RcppExports.o
In file included from RcppExports.cpp:4:
./GBOP2_types.h:5:9: warning: 'ARMA_DONT_USE_WRAPPER' macro redefined [-Wmacro-redefined]
    5 | #define ARMA_DONT_USE_WRAPPER
      |         ^
<command line>:2:9: note: previous definition is here
    2 | #define ARMA_DONT_USE_WRAPPER 1
      |         ^
1 warning generated.
/usr/local/clang21/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang21/lib -L/usr/local/clang21/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -o GBOP2.so Calculation2_original.o Calculation_minimizeN_twolambda_update.o Calculation_twoboundaries_jsm.o RcppExports.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/GBOP2/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/GBOP2/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/GBOP2/src'
installing to /data/gannet/ripley/R/packages/tests-clang/GBOP2.Rcheck/00LOCK-GBOP2/00new/GBOP2/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (GBOP2)