* installing *source* package ‘FisPro’ ...
** package ‘FisPro’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘clang version 18.1.4’
using C++17
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/FisPro/src'
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -I../inst/include -I../inst/include/base -DBOOST_NO_AUTO_PTR -DR_PACKAGE -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c RcppExports.cpp -o RcppExports.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -I../inst/include -I../inst/include/base -DBOOST_NO_AUTO_PTR -DR_PACKAGE -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c mf_module.cpp -o mf_module.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -I../inst/include -I../inst/include/base -DBOOST_NO_AUTO_PTR -DR_PACKAGE -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c fisin_module.cpp -o fisin_module.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -I../inst/include -I../inst/include/base -DBOOST_NO_AUTO_PTR -DR_PACKAGE -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c fisout_module.cpp -o fisout_module.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -I../inst/include -I../inst/include/base -DBOOST_NO_AUTO_PTR -DR_PACKAGE -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c rule_module.cpp -o rule_module.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -I../inst/include -I../inst/include/base -DBOOST_NO_AUTO_PTR -DR_PACKAGE -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c fis_module.cpp -o fis_module.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -I../inst/include -I../inst/include/base -DBOOST_NO_AUTO_PTR -DR_PACKAGE -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c deprecated_module.cpp -o deprecated_module.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -I../inst/include -I../inst/include/base -DBOOST_NO_AUTO_PTR -DR_PACKAGE -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c mf_wrapper.cpp -o mf_wrapper.o
deprecated_module.cpp:153:9: warning: private field 'mf_triangular' is not used [-Wunused-private-field]
153 | MFTRI *mf_triangular;
| ^
deprecated_module.cpp:177:13: warning: private field 'mf_trapezoidal_inf' is not used [-Wunused-private-field]
177 | MFTRAPINF *mf_trapezoidal_inf;
| ^
deprecated_module.cpp:201:13: warning: private field 'mf_trapezoidal_sup' is not used [-Wunused-private-field]
201 | MFTRAPSUP *mf_trapezoidal_sup;
| ^
deprecated_module.cpp:228:10: warning: private field 'mf_trapezoidal' is not used [-Wunused-private-field]
228 | MFTRAP *mf_trapezoidal;
| ^
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -I../inst/include -I../inst/include/base -DBOOST_NO_AUTO_PTR -DR_PACKAGE -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c fisin_wrapper.cpp -o fisin_wrapper.o
In file included from mf_wrapper.cpp:40:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/format.hpp:19:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/detail/workaround.hpp:8:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/config/workaround.hpp:41:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/config.hpp:48:
/data/gannet/ripley/R/test-clang/BH/include/boost/config/stdlib/libcpp.hpp:98:11: warning: 'BOOST_NO_AUTO_PTR' macro redefined [-Wmacro-redefined]
98 | # define BOOST_NO_AUTO_PTR
| ^
<command line>:2:9: note: previous definition is here
2 | #define BOOST_NO_AUTO_PTR 1
| ^
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -I../inst/include -I../inst/include/base -DBOOST_NO_AUTO_PTR -DR_PACKAGE -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c fisout_wrapper.cpp -o fisout_wrapper.o
1 warning generated.
4 warnings generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -I../inst/include -I../inst/include/base -DBOOST_NO_AUTO_PTR -DR_PACKAGE -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c fuzzy_range.cpp -o fuzzy_range.o
In file included from fisin_wrapper.cpp:41:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/format.hpp:19:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/detail/workaround.hpp:8:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/config/workaround.hpp:41:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/config.hpp:48:
/data/gannet/ripley/R/test-clang/BH/include/boost/config/stdlib/libcpp.hpp:98:11: warning: 'BOOST_NO_AUTO_PTR' macro redefined [-Wmacro-redefined]
98 | # define BOOST_NO_AUTO_PTR
| ^
<command line>:2:9: note: previous definition is here
2 | #define BOOST_NO_AUTO_PTR 1
| ^
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -I../inst/include -I../inst/include/base -DBOOST_NO_AUTO_PTR -DR_PACKAGE -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c fuzzy_wrapper.cpp -o fuzzy_wrapper.o
In file included from fisout_wrapper.cpp:41:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/format.hpp:19:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/detail/workaround.hpp:8:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/config/workaround.hpp:41:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/config.hpp:48:
/data/gannet/ripley/R/test-clang/BH/include/boost/config/stdlib/libcpp.hpp:98:11: warning: 'BOOST_NO_AUTO_PTR' macro redefined [-Wmacro-redefined]
98 | # define BOOST_NO_AUTO_PTR
| ^
<command line>:2:9: note: previous definition is here
2 | #define BOOST_NO_AUTO_PTR 1
| ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -I../inst/include -I../inst/include/base -DBOOST_NO_AUTO_PTR -DR_PACKAGE -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c rule_wrapper.cpp -o rule_wrapper.o
1 warning generated.
In file included from fuzzy_range.cpp:42:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/range/algorithm/min_element.hpp:13:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/concept_check.hpp:20:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/concept/assert.hpp:7:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/config.hpp:48:
/data/gannet/ripley/R/test-clang/BH/include/boost/config/stdlib/libcpp.hpp:98:11: warning: 'BOOST_NO_AUTO_PTR' macro redefined [-Wmacro-redefined]
98 | # define BOOST_NO_AUTO_PTR
| ^
<command line>:2:9: note: previous definition is here
2 | #define BOOST_NO_AUTO_PTR 1
| ^
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -I../inst/include -I../inst/include/base -DBOOST_NO_AUTO_PTR -DR_PACKAGE -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c fis_wrapper.cpp -o fis_wrapper.o
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -I../inst/include -I../inst/include/base -DBOOST_NO_AUTO_PTR -DR_PACKAGE -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c base/aggreg.cpp -o base/aggreg.o
In file included from fuzzy_wrapper.cpp:40:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/format.hpp:19:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/detail/workaround.hpp:8:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/config/workaround.hpp:41:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/config.hpp:48:
/data/gannet/ripley/R/test-clang/BH/include/boost/config/stdlib/libcpp.hpp:98:11: warning: 'BOOST_NO_AUTO_PTR' macro redefined [-Wmacro-redefined]
98 | # define BOOST_NO_AUTO_PTR
| ^
<command line>:2:9: note: previous definition is here
2 | #define BOOST_NO_AUTO_PTR 1
| ^
In file included from rule_wrapper.cpp:41:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/format.hpp:19:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/detail/workaround.hpp:8:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/config/workaround.hpp:41:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/config.hpp:48:
/data/gannet/ripley/R/test-clang/BH/include/boost/config/stdlib/libcpp.hpp:98:11: warning: 'BOOST_NO_AUTO_PTR' macro redefined [-Wmacro-redefined]
98 | # define BOOST_NO_AUTO_PTR
| ^
<command line>:2:9: note: previous definition is here
2 | #define BOOST_NO_AUTO_PTR 1
| ^
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -I../inst/include -I../inst/include/base -DBOOST_NO_AUTO_PTR -DR_PACKAGE -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c base/common.cpp -o base/common.o
1 warning generated.
1 warning generated.
In file included from fis_wrapper.cpp:40:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/format.hpp:19:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/detail/workaround.hpp:8:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/config/workaround.hpp:41:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/config.hpp:48:
/data/gannet/ripley/R/test-clang/BH/include/boost/config/stdlib/libcpp.hpp:98:11: warning: 'BOOST_NO_AUTO_PTR' macro redefined [-Wmacro-redefined]
98 | # define BOOST_NO_AUTO_PTR
| ^
<command line>:2:9: note: previous definition is here
2 | #define BOOST_NO_AUTO_PTR 1
| ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -I../inst/include -I../inst/include/base -DBOOST_NO_AUTO_PTR -DR_PACKAGE -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c base/defuz.cpp -o base/defuz.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -I../inst/include -I../inst/include/base -DBOOST_NO_AUTO_PTR -DR_PACKAGE -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c base/fis.cpp -o base/fis.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -I../inst/include -I../inst/include/base -DBOOST_NO_AUTO_PTR -DR_PACKAGE -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c base/fuzzy_distance.cpp -o base/fuzzy_distance.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -I../inst/include -I../inst/include/base -DBOOST_NO_AUTO_PTR -DR_PACKAGE -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c base/in.cpp -o base/in.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -I../inst/include -I../inst/include/base -DBOOST_NO_AUTO_PTR -DR_PACKAGE -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c base/mf.cpp -o base/mf.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -I../inst/include -I../inst/include/base -DBOOST_NO_AUTO_PTR -DR_PACKAGE -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c base/mfdposs.cpp -o base/mfdposs.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -I../inst/include -I../inst/include/base -DBOOST_NO_AUTO_PTR -DR_PACKAGE -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c base/out.cpp -o base/out.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -I../inst/include -I../inst/include/base -DBOOST_NO_AUTO_PTR -DR_PACKAGE -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c base/pt.cpp -o base/pt.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I. -I../inst/include -I../inst/include/base -DBOOST_NO_AUTO_PTR -DR_PACKAGE -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c base/rule.cpp -o base/rule.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o FisPro.so RcppExports.o mf_module.o fisin_module.o fisout_module.o rule_module.o fis_module.o deprecated_module.o mf_wrapper.o fisin_wrapper.o fisout_wrapper.o fuzzy_range.o fuzzy_wrapper.o rule_wrapper.o fis_wrapper.o base/aggreg.o base/common.o base/defuz.o base/fis.o base/fuzzy_distance.o base/in.o base/mf.o base/mfdposs.o base/out.o base/pt.o base/rule.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/FisPro/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/FisPro/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/FisPro/src'
installing to /data/gannet/ripley/R/packages/tests-clang/FisPro.Rcheck/00LOCK-FisPro/00new/FisPro/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (FisPro)