Install log for 'EpiNow2'

* installing *source* package ‘EpiNow2’ ...
** this is package ‘EpiNow2’ version ‘1.9.0’
** package ‘EpiNow2’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
specified C++17
using C++ compiler: ‘clang version 23.1.1’
using C++17
make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-clang/EpiNow2/src'


/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I"../inst/include" -I"/data/localhost/ripley/R/test-clang/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/rstan/include' -I'/data/localhost/ripley/R/test-clang/StanHeaders/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include   -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/data/localhost/ripley/R/test-clang/RcppParallel/include -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW   -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c RcppExports.cpp -o RcppExports.o
In file included from RcppExports.cpp:4:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from RcppExports.cpp:4:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from RcppExports.cpp:4:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
   72 |                         Index replacements = 0;
      |                               ^
In file included from RcppExports.cpp:4:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  246 |   int count = 0;
      |       ^
5 warnings generated.


/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I"../inst/include" -I"/data/localhost/ripley/R/test-clang/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/rstan/include' -I'/data/localhost/ripley/R/test-clang/StanHeaders/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include   -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/data/localhost/ripley/R/test-clang/RcppParallel/include -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW   -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c stanExports_dist_fit.cc -o stanExports_dist_fit.o
In file included from stanExports_dist_fit.cc:5:
In file included from ./stanExports_dist_fit.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from stanExports_dist_fit.cc:5:
In file included from ./stanExports_dist_fit.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from stanExports_dist_fit.cc:5:
In file included from ./stanExports_dist_fit.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:21:
/data/localhost/ripley/R/test-clang/rstan/include/rstan/io/r_ostream.hpp:47:31: warning: 'rstan::io::r_cout_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual]
   47 |       virtual std::streamsize xsputn(const char_type* s, int n) {
      |                               ^
/usr/local/clang23/bin/../include/c++/v1/streambuf:381:22: note: hidden overloaded virtual function 'std::basic_streambuf<char>::xsputn' declared here: type mismatch at 2nd parameter ('streamsize' (aka 'long') vs 'int')
  381 |   virtual streamsize xsputn(const char_type* __s, streamsize __n) {
      |                      ^
In file included from stanExports_dist_fit.cc:5:
In file included from ./stanExports_dist_fit.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:21:
/data/localhost/ripley/R/test-clang/rstan/include/rstan/io/r_ostream.hpp:70:31: warning: 'rstan::io::r_cerr_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual]
   70 |       virtual std::streamsize xsputn(const char_type* s, int n) {
      |                               ^
/usr/local/clang23/bin/../include/c++/v1/streambuf:381:22: note: hidden overloaded virtual function 'std::basic_streambuf<char>::xsputn' declared here: type mismatch at 2nd parameter ('streamsize' (aka 'long') vs 'int')
  381 |   virtual streamsize xsputn(const char_type* __s, streamsize __n) {
      |                      ^
In file included from stanExports_dist_fit.cc:5:
In file included from ./stanExports_dist_fit.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
   72 |                         Index replacements = 0;
      |                               ^
In file included from stanExports_dist_fit.cc:5:
In file included from ./stanExports_dist_fit.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  246 |   int count = 0;
      |       ^
In file included from stanExports_dist_fit.cc:5:
In file included from ./stanExports_dist_fit.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/constraint.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/abs.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__exclude_from_explicit_instantiation__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
   29 | BOOST_MOVE_STD_NS_BEG
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
   21 |    #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
   74 | #  define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
   70 |     _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
      |                                        ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
   51 |   _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push(                                         \
      |   ^
<scratch space>:21:69: note: expanded from here
   21 |  clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
      |                                                                     ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
   61 | BOOST_MOVE_STD_NS_END
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
   22 |    #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
   75 | #  define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
   72 | #  define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
      |                                                   ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
   57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
      |                                                ^
<scratch space>:23:8: note: expanded from here
   23 |  clang attribute _LibcxxExplicitABIAnnotations.pop
      |        ^
In file included from stanExports_dist_fit.cc:5:
In file included from ./stanExports_dist_fit.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/constraint.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/abs.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__visibility__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
   29 | BOOST_MOVE_STD_NS_BEG
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
   21 |    #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
   74 | #  define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
   70 |     _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
      |                                        ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
   51 |   _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push(                                         \
      |   ^
<scratch space>:21:110: note: expanded from here
   21 |  clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
      |                                                                                                              ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
   61 | BOOST_MOVE_STD_NS_END
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
   22 |    #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
   75 | #  define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
   72 | #  define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
      |                                                   ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
   57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
      |                                                ^
<scratch space>:23:8: note: expanded from here
   23 |  clang attribute _LibcxxExplicitABIAnnotations.pop
      |        ^
In file included from stanExports_dist_fit.cc:5:
In file included from ./stanExports_dist_fit.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/constraint.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/abs.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__abi_tag__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
   29 | BOOST_MOVE_STD_NS_BEG
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
   21 |    #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
   74 | #  define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
   70 |     _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
      |                                        ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
   51 |   _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push(                                         \
      |   ^
<scratch space>:21:136: note: expanded from here
   21 |  clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
      |                                                                                                                                        ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
   61 | BOOST_MOVE_STD_NS_END
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
   22 |    #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
   75 | #  define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
   72 | #  define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
      |                                                   ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
   57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
      |                                                ^
<scratch space>:23:8: note: expanded from here
   23 |  clang attribute _LibcxxExplicitABIAnnotations.pop
      |        ^
In file included from stanExports_dist_fit.cc:5:
In file included from ./stanExports_dist_fit.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:34:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token]
  166 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_dist_fit.cc:5:
In file included from ./stanExports_dist_fit.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token]
  125 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_dist_fit.cc:5:
In file included from ./stanExports_dist_fit.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:131:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token]
   49 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_dist_fit.cc:5:
In file included from ./stanExports_dist_fit.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:39:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/linear_algebra.hpp:20:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token]
   75 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_dist_fit.cc:5:
In file included from ./stanExports_dist_fit.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:40:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/unscale.hpp:28:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token]
  139 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_dist_fit.cc:5:
In file included from ./stanExports_dist_fit.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token]
  120 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_dist_fit.cc:5:
In file included from ./stanExports_dist_fit.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:21:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token]
   99 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_dist_fit.cc:5:
In file included from ./stanExports_dist_fit.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token]
  495 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_dist_fit.cc:5:
In file included from ./stanExports_dist_fit.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:18:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob.hpp:290:
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/student_t_qf.hpp:74:32: warning: unused variable 'function' [-Wunused-variable]
   74 |   static constexpr const char* function = "student_t_qf";
      |                                ^~~~~~~~
In file included from stanExports_dist_fit.cc:5:
In file included from ./stanExports_dist_fit.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:49:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:16:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob.hpp:7:
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:52:20: warning: unused variable 'p_val_flip' [-Wunused-variable]
   52 |       const double p_val_flip = p_val < 0.5 ? p_val : 1.0 - p_val;
      |                    ^~~~~~~~~~
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:42:18: warning: unused variable 'sqrt_inv_ibeta_m1' [-Wunused-variable]
   42 |     const double sqrt_inv_ibeta_m1 = sqrt(inv(ibeta_arg) - 1.0);
      |                  ^~~~~~~~~~~~~~~~~
In file included from stanExports_dist_fit.cc:5:
In file included from ./stanExports_dist_fit.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:50:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/services/experimental/advi/fullrank.hpp:12:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/variational/advi.hpp:12:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/circular_buffer.hpp:57:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/circular_buffer/details.hpp:22:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/move/move.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/move/iterator.hpp:27:
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/iterator_traits.hpp:63:1: warning: unused attribute '__exclude_from_explicit_instantiation__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
   63 | BOOST_MOVE_STD_NS_BEG
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
   21 |    #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
   74 | #  define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
   70 |     _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
      |                                        ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
   51 |   _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push(                                         \
      |   ^
<scratch space>:9:69: note: expanded from here
    9 |  clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
      |                                                                     ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/iterator_traits.hpp:81:1: note: '#pragma clang attribute push' regions ends here
   81 | BOOST_MOVE_STD_NS_END
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
   22 |    #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
   75 | #  define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
   72 | #  define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
      |                                                   ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
   57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
      |                                                ^
<scratch space>:11:8: note: expanded from here
   11 |  clang attribute _LibcxxExplicitABIAnnotations.pop
      |        ^
In file included from stanExports_dist_fit.cc:5:
In file included from ./stanExports_dist_fit.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:50:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/services/experimental/advi/fullrank.hpp:12:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/variational/advi.hpp:12:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/circular_buffer.hpp:57:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/circular_buffer/details.hpp:22:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/move/move.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/move/iterator.hpp:27:
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/iterator_traits.hpp:63:1: warning: unused attribute '__visibility__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
   63 | BOOST_MOVE_STD_NS_BEG
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
   21 |    #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
   74 | #  define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
   70 |     _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
      |                                        ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
   51 |   _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push(                                         \
      |   ^
<scratch space>:9:110: note: expanded from here
    9 |  clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
      |                                                                                                              ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/iterator_traits.hpp:81:1: note: '#pragma clang attribute push' regions ends here
   81 | BOOST_MOVE_STD_NS_END
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
   22 |    #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
   75 | #  define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
   72 | #  define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
      |                                                   ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
   57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
      |                                                ^
<scratch space>:11:8: note: expanded from here
   11 |  clang attribute _LibcxxExplicitABIAnnotations.pop
      |        ^
In file included from stanExports_dist_fit.cc:5:
In file included from ./stanExports_dist_fit.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:50:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/services/experimental/advi/fullrank.hpp:12:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/variational/advi.hpp:12:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/circular_buffer.hpp:57:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/circular_buffer/details.hpp:22:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/move/move.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/move/iterator.hpp:27:
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/iterator_traits.hpp:63:1: warning: unused attribute '__abi_tag__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
   63 | BOOST_MOVE_STD_NS_BEG
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
   21 |    #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
   74 | #  define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
   70 |     _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
      |                                        ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
   51 |   _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push(                                         \
      |   ^
<scratch space>:9:136: note: expanded from here
    9 |  clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
      |                                                                                                                                        ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/iterator_traits.hpp:81:1: note: '#pragma clang attribute push' regions ends here
   81 | BOOST_MOVE_STD_NS_END
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
   22 |    #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
   75 | #  define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
   72 | #  define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
      |                                                   ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
   57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
      |                                                ^
<scratch space>:11:8: note: expanded from here
   11 |  clang attribute _LibcxxExplicitABIAnnotations.pop
      |        ^
In file included from stanExports_dist_fit.cc:5:
In file included from ./stanExports_dist_fit.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:54:
/data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/services/optimize/newton.hpp:98:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable]
   98 |   int ret = 0;
      |       ^
In file included from stanExports_dist_fit.cc:5:
In file included from ./stanExports_dist_fit.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
/data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1252:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable]
 1252 |     int ret = stan::services::error_codes::CONFIG;
      |         ^
In file included from stanExports_dist_fit.cc:5:
In file included from ./stanExports_dist_fit.h:25:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/model/model_header.hpp:13:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/model/indexing.hpp:13:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/model/indexing/rvalue_varmat.hpp:7:
/data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/model/indexing/rvalue.hpp:520:22: warning: unused variable 'rows' [-Wunused-variable]
  520 |   const Eigen::Index rows = row_idx.ns_.size();
      |                      ^~~~
/data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/model/indexing/rvalue.hpp:521:22: warning: unused variable 'cols' [-Wunused-variable]
  521 |   const Eigen::Index cols = col_idx.ns_.size();
      |                      ^~~~
28 warnings generated.


/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I"../inst/include" -I"/data/localhost/ripley/R/test-clang/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/rstan/include' -I'/data/localhost/ripley/R/test-clang/StanHeaders/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include   -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/data/localhost/ripley/R/test-clang/RcppParallel/include -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW   -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c stanExports_estimate_dist.cc -o stanExports_estimate_dist.o
In file included from stanExports_estimate_dist.cc:5:
In file included from ./stanExports_estimate_dist.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from stanExports_estimate_dist.cc:5:
In file included from ./stanExports_estimate_dist.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from stanExports_estimate_dist.cc:5:
In file included from ./stanExports_estimate_dist.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:21:
/data/localhost/ripley/R/test-clang/rstan/include/rstan/io/r_ostream.hpp:47:31: warning: 'rstan::io::r_cout_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual]
   47 |       virtual std::streamsize xsputn(const char_type* s, int n) {
      |                               ^
/usr/local/clang23/bin/../include/c++/v1/streambuf:381:22: note: hidden overloaded virtual function 'std::basic_streambuf<char>::xsputn' declared here: type mismatch at 2nd parameter ('streamsize' (aka 'long') vs 'int')
  381 |   virtual streamsize xsputn(const char_type* __s, streamsize __n) {
      |                      ^
In file included from stanExports_estimate_dist.cc:5:
In file included from ./stanExports_estimate_dist.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:21:
/data/localhost/ripley/R/test-clang/rstan/include/rstan/io/r_ostream.hpp:70:31: warning: 'rstan::io::r_cerr_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual]
   70 |       virtual std::streamsize xsputn(const char_type* s, int n) {
      |                               ^
/usr/local/clang23/bin/../include/c++/v1/streambuf:381:22: note: hidden overloaded virtual function 'std::basic_streambuf<char>::xsputn' declared here: type mismatch at 2nd parameter ('streamsize' (aka 'long') vs 'int')
  381 |   virtual streamsize xsputn(const char_type* __s, streamsize __n) {
      |                      ^
In file included from stanExports_estimate_dist.cc:5:
In file included from ./stanExports_estimate_dist.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
   72 |                         Index replacements = 0;
      |                               ^
In file included from stanExports_estimate_dist.cc:5:
In file included from ./stanExports_estimate_dist.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  246 |   int count = 0;
      |       ^
In file included from stanExports_estimate_dist.cc:5:
In file included from ./stanExports_estimate_dist.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/constraint.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/abs.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__exclude_from_explicit_instantiation__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
   29 | BOOST_MOVE_STD_NS_BEG
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
   21 |    #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
   74 | #  define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
   70 |     _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
      |                                        ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
   51 |   _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push(                                         \
      |   ^
<scratch space>:21:69: note: expanded from here
   21 |  clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
      |                                                                     ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
   61 | BOOST_MOVE_STD_NS_END
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
   22 |    #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
   75 | #  define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
   72 | #  define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
      |                                                   ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
   57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
      |                                                ^
<scratch space>:23:8: note: expanded from here
   23 |  clang attribute _LibcxxExplicitABIAnnotations.pop
      |        ^
In file included from stanExports_estimate_dist.cc:5:
In file included from ./stanExports_estimate_dist.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/constraint.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/abs.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__visibility__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
   29 | BOOST_MOVE_STD_NS_BEG
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
   21 |    #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
   74 | #  define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
   70 |     _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
      |                                        ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
   51 |   _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push(                                         \
      |   ^
<scratch space>:21:110: note: expanded from here
   21 |  clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
      |                                                                                                              ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
   61 | BOOST_MOVE_STD_NS_END
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
   22 |    #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
   75 | #  define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
   72 | #  define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
      |                                                   ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
   57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
      |                                                ^
<scratch space>:23:8: note: expanded from here
   23 |  clang attribute _LibcxxExplicitABIAnnotations.pop
      |        ^
In file included from stanExports_estimate_dist.cc:5:
In file included from ./stanExports_estimate_dist.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/constraint.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/abs.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__abi_tag__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
   29 | BOOST_MOVE_STD_NS_BEG
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
   21 |    #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
   74 | #  define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
   70 |     _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
      |                                        ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
   51 |   _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push(                                         \
      |   ^
<scratch space>:21:136: note: expanded from here
   21 |  clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
      |                                                                                                                                        ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
   61 | BOOST_MOVE_STD_NS_END
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
   22 |    #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
   75 | #  define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
   72 | #  define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
      |                                                   ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
   57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
      |                                                ^
<scratch space>:23:8: note: expanded from here
   23 |  clang attribute _LibcxxExplicitABIAnnotations.pop
      |        ^
In file included from stanExports_estimate_dist.cc:5:
In file included from ./stanExports_estimate_dist.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:34:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token]
  166 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_estimate_dist.cc:5:
In file included from ./stanExports_estimate_dist.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token]
  125 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_estimate_dist.cc:5:
In file included from ./stanExports_estimate_dist.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:131:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token]
   49 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_estimate_dist.cc:5:
In file included from ./stanExports_estimate_dist.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:39:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/linear_algebra.hpp:20:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token]
   75 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_estimate_dist.cc:5:
In file included from ./stanExports_estimate_dist.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:40:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/unscale.hpp:28:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token]
  139 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_estimate_dist.cc:5:
In file included from ./stanExports_estimate_dist.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token]
  120 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_estimate_dist.cc:5:
In file included from ./stanExports_estimate_dist.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:21:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token]
   99 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_estimate_dist.cc:5:
In file included from ./stanExports_estimate_dist.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token]
  495 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_estimate_dist.cc:5:
In file included from ./stanExports_estimate_dist.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:18:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob.hpp:290:
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/student_t_qf.hpp:74:32: warning: unused variable 'function' [-Wunused-variable]
   74 |   static constexpr const char* function = "student_t_qf";
      |                                ^~~~~~~~
In file included from stanExports_estimate_dist.cc:5:
In file included from ./stanExports_estimate_dist.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:49:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:16:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob.hpp:7:
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:52:20: warning: unused variable 'p_val_flip' [-Wunused-variable]
   52 |       const double p_val_flip = p_val < 0.5 ? p_val : 1.0 - p_val;
      |                    ^~~~~~~~~~
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:42:18: warning: unused variable 'sqrt_inv_ibeta_m1' [-Wunused-variable]
   42 |     const double sqrt_inv_ibeta_m1 = sqrt(inv(ibeta_arg) - 1.0);
      |                  ^~~~~~~~~~~~~~~~~
In file included from stanExports_estimate_dist.cc:5:
In file included from ./stanExports_estimate_dist.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:50:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/services/experimental/advi/fullrank.hpp:12:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/variational/advi.hpp:12:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/circular_buffer.hpp:57:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/circular_buffer/details.hpp:22:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/move/move.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/move/iterator.hpp:27:
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/iterator_traits.hpp:63:1: warning: unused attribute '__exclude_from_explicit_instantiation__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
   63 | BOOST_MOVE_STD_NS_BEG
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
   21 |    #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
   74 | #  define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
   70 |     _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
      |                                        ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
   51 |   _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push(                                         \
      |   ^
<scratch space>:9:69: note: expanded from here
    9 |  clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
      |                                                                     ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/iterator_traits.hpp:81:1: note: '#pragma clang attribute push' regions ends here
   81 | BOOST_MOVE_STD_NS_END
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
   22 |    #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
   75 | #  define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
   72 | #  define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
      |                                                   ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
   57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
      |                                                ^
<scratch space>:11:8: note: expanded from here
   11 |  clang attribute _LibcxxExplicitABIAnnotations.pop
      |        ^
In file included from stanExports_estimate_dist.cc:5:
In file included from ./stanExports_estimate_dist.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:50:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/services/experimental/advi/fullrank.hpp:12:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/variational/advi.hpp:12:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/circular_buffer.hpp:57:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/circular_buffer/details.hpp:22:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/move/move.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/move/iterator.hpp:27:
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/iterator_traits.hpp:63:1: warning: unused attribute '__visibility__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
   63 | BOOST_MOVE_STD_NS_BEG
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
   21 |    #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
   74 | #  define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
   70 |     _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
      |                                        ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
   51 |   _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push(                                         \
      |   ^
<scratch space>:9:110: note: expanded from here
    9 |  clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
      |                                                                                                              ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/iterator_traits.hpp:81:1: note: '#pragma clang attribute push' regions ends here
   81 | BOOST_MOVE_STD_NS_END
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
   22 |    #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
   75 | #  define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
   72 | #  define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
      |                                                   ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
   57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
      |                                                ^
<scratch space>:11:8: note: expanded from here
   11 |  clang attribute _LibcxxExplicitABIAnnotations.pop
      |        ^
In file included from stanExports_estimate_dist.cc:5:
In file included from ./stanExports_estimate_dist.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:50:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/services/experimental/advi/fullrank.hpp:12:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/variational/advi.hpp:12:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/circular_buffer.hpp:57:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/circular_buffer/details.hpp:22:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/move/move.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/move/iterator.hpp:27:
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/iterator_traits.hpp:63:1: warning: unused attribute '__abi_tag__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
   63 | BOOST_MOVE_STD_NS_BEG
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
   21 |    #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
   74 | #  define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
   70 |     _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
      |                                        ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
   51 |   _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push(                                         \
      |   ^
<scratch space>:9:136: note: expanded from here
    9 |  clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
      |                                                                                                                                        ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/iterator_traits.hpp:81:1: note: '#pragma clang attribute push' regions ends here
   81 | BOOST_MOVE_STD_NS_END
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
   22 |    #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
   75 | #  define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
   72 | #  define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
      |                                                   ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
   57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
      |                                                ^
<scratch space>:11:8: note: expanded from here
   11 |  clang attribute _LibcxxExplicitABIAnnotations.pop
      |        ^
In file included from stanExports_estimate_dist.cc:5:
In file included from ./stanExports_estimate_dist.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:54:
/data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/services/optimize/newton.hpp:98:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable]
   98 |   int ret = 0;
      |       ^
In file included from stanExports_estimate_dist.cc:5:
In file included from ./stanExports_estimate_dist.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
/data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1252:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable]
 1252 |     int ret = stan::services::error_codes::CONFIG;
      |         ^
In file included from stanExports_estimate_dist.cc:5:
In file included from ./stanExports_estimate_dist.h:25:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/model/model_header.hpp:13:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/model/indexing.hpp:13:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/model/indexing/rvalue_varmat.hpp:7:
/data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/model/indexing/rvalue.hpp:520:22: warning: unused variable 'rows' [-Wunused-variable]
  520 |   const Eigen::Index rows = row_idx.ns_.size();
      |                      ^~~~
/data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/model/indexing/rvalue.hpp:521:22: warning: unused variable 'cols' [-Wunused-variable]
  521 |   const Eigen::Index cols = col_idx.ns_.size();
      |                      ^~~~
In file included from stanExports_estimate_dist.cc:5:
./stanExports_estimate_dist.h:1818:15: warning: unused variable 'y' [-Wunused-variable]
 1818 |   const auto& y = stan::math::to_ref(y_arg__);
      |               ^
./stanExports_estimate_dist.h:890:12: note: in instantiation of function template specialization 'model_estimate_dist_namespace::primarycensored_ode<double, Eigen::Matrix<double, -1, 1>, std::vector<double>, std::vector<double>, std::vector<int>, nullptr>' requested here
  890 |     return primarycensored_ode(t, y, theta, x_r, x_i, pstream__);
      |            ^
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/coupled_ode_system.hpp:72:43: note: in instantiation of function template specialization 'model_estimate_dist_namespace::primarycensored_ode_variadic2_functor__::operator()<double, Eigen::Matrix<double, -1, 1>, std::vector<double>, std::vector<double>, std::vector<int>, nullptr>' requested here
   72 |         [&](const Args&... args) { return f_(t, y, msgs_, args...); },
      |                                           ^
/data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/stepper/dense_output_runge_kutta.hpp:329:13: note: in instantiation of member function 'stan::math::coupled_ode_system_impl<true, model_estimate_dist_namespace::primarycensored_ode_variadic2_functor__, double, const std::vector<double> &, const std::vector<double> &, const std::vector<int> &>::operator()' requested here
  329 |             sys( get_current_state() , get_current_deriv() , m_t );
      |             ^
/data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/integrate/check_adapter.hpp:153:26: note: in instantiation of function template specialization 'boost::numeric::odeint::dense_output_runge_kutta<boost::numeric::odeint::controlled_runge_kutta<boost::numeric::odeint::runge_kutta_dopri5<std::vector<double>>>>::do_step<std::reference_wrapper<stan::math::coupled_ode_system<model_estimate_dist_namespace::primarycensored_ode_variadic2_functor__, double, const std::vector<double> &, const std::vector<double> &, const std::vector<int> &>>>' requested here
  153 |         return m_stepper.do_step(system);
      |                          ^
/data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/integrate/detail/integrate_times.hpp:159:16: note: in instantiation of function template specialization 'boost::numeric::odeint::checked_stepper<boost::numeric::odeint::dense_output_runge_kutta<boost::numeric::odeint::controlled_runge_kutta<boost::numeric::odeint::runge_kutta_dopri5<std::vector<double>>>>, boost::numeric::odeint::max_step_checker>::do_step<std::reference_wrapper<stan::math::coupled_ode_system<model_estimate_dist_namespace::primarycensored_ode_variadic2_functor__, double, const std::vector<double> &, const std::vector<double> &, const std::vector<int> &>>>' requested here
  159 |             st.do_step( system );
      |                ^
/data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/integrate/integrate_times.hpp:51:20: note: (skipping 8 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
   51 |     return detail::integrate_times(
      |                    ^
/data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/services/util/initialize.hpp:130:33: note: in instantiation of function template specialization 'model_estimate_dist_namespace::model_estimate_dist::log_prob<false, true, double>' requested here
  130 |       log_prob = model.template log_prob<false, Jacobian>(unconstrained,
      |                                 ^
/data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_estimate_dist_namespace::model_estimate_dist, stan::io::var_context, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
   49 |   std::vector<double> cont_vector = util::initialize(
      |                                           ^
/data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_estimate_dist_namespace::model_estimate_dist>' requested here
  481 |     return_code = stan::services::diagnose::diagnose(model,
      |                                             ^
/data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_estimate_dist_namespace::model_estimate_dist, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
 1215 |     ret = command(args, model_, holder, names_oi_tidx_,
      |           ^
stanExports_estimate_dist.cc:15:73: note: in instantiation of member function 'rstan::stan_fit<model_estimate_dist_namespace::model_estimate_dist, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
   15 |     .method("call_sampler", &rstan::stan_fit<stan_model, stan::rng_t> ::call_sampler)
      |                                                                         ^
In file included from stanExports_estimate_dist.cc:5:
./stanExports_estimate_dist.h:1818:15: warning: unused variable 'y' [-Wunused-variable]
 1818 |   const auto& y = stan::math::to_ref(y_arg__);
      |               ^
./stanExports_estimate_dist.h:890:12: note: in instantiation of function template specialization 'model_estimate_dist_namespace::primarycensored_ode<double, Eigen::Matrix<stan::math::var_value<double>, -1, 1>, std::vector<stan::math::var_value<double>>, std::vector<double>, std::vector<int>, nullptr>' requested here
  890 |     return primarycensored_ode(t, y, theta, x_r, x_i, pstream__);
      |            ^
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/functor/coupled_ode_system.hpp:130:38: note: in instantiation of function template specialization 'model_estimate_dist_namespace::primarycensored_ode_variadic2_functor__::operator()<double, Eigen::Matrix<stan::math::var_value<double>, -1, 1>, std::vector<stan::math::var_value<double>>, std::vector<double>, std::vector<int>, nullptr>' requested here
  130 |         [&](auto&&... args) { return f_(t, y_vars, msgs_, args...); },
      |                                      ^
/data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/stepper/dense_output_runge_kutta.hpp:329:13: note: in instantiation of member function 'stan::math::coupled_ode_system_impl<false, model_estimate_dist_namespace::primarycensored_ode_variadic2_functor__, stan::math::var_value<double>, const std::vector<stan::math::var_value<double>> &, const std::vector<double> &, const std::vector<int> &>::operator()' requested here
  329 |             sys( get_current_state() , get_current_deriv() , m_t );
      |             ^
/data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/integrate/check_adapter.hpp:153:26: note: in instantiation of function template specialization 'boost::numeric::odeint::dense_output_runge_kutta<boost::numeric::odeint::controlled_runge_kutta<boost::numeric::odeint::runge_kutta_dopri5<std::vector<double>>>>::do_step<std::reference_wrapper<stan::math::coupled_ode_system<model_estimate_dist_namespace::primarycensored_ode_variadic2_functor__, stan::math::var_value<double>, const std::vector<stan::math::var_value<double>> &, const std::vector<double> &, const std::vector<int> &>>>' requested here
  153 |         return m_stepper.do_step(system);
      |                          ^
/data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/integrate/detail/integrate_times.hpp:159:16: note: in instantiation of function template specialization 'boost::numeric::odeint::checked_stepper<boost::numeric::odeint::dense_output_runge_kutta<boost::numeric::odeint::controlled_runge_kutta<boost::numeric::odeint::runge_kutta_dopri5<std::vector<double>>>>, boost::numeric::odeint::max_step_checker>::do_step<std::reference_wrapper<stan::math::coupled_ode_system<model_estimate_dist_namespace::primarycensored_ode_variadic2_functor__, stan::math::var_value<double>, const std::vector<stan::math::var_value<double>> &, const std::vector<double> &, const std::vector<int> &>>>' requested here
  159 |             st.do_step( system );
      |                ^
/data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/integrate/integrate_times.hpp:51:20: note: (skipping 9 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
   51 |     return detail::integrate_times(
      |                    ^
/data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/services/util/initialize.hpp:169:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad<true, true, model_estimate_dist_namespace::model_estimate_dist>' requested here
  169 |       log_prob = stan::model::log_prob_grad<true, Jacobian>(
      |                               ^
/data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_estimate_dist_namespace::model_estimate_dist, stan::io::var_context, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
   49 |   std::vector<double> cont_vector = util::initialize(
      |                                           ^
/data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_estimate_dist_namespace::model_estimate_dist>' requested here
  481 |     return_code = stan::services::diagnose::diagnose(model,
      |                                             ^
/data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_estimate_dist_namespace::model_estimate_dist, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
 1215 |     ret = command(args, model_, holder, names_oi_tidx_,
      |           ^
stanExports_estimate_dist.cc:15:73: note: in instantiation of member function 'rstan::stan_fit<model_estimate_dist_namespace::model_estimate_dist, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
   15 |     .method("call_sampler", &rstan::stan_fit<stan_model, stan::rng_t> ::call_sampler)
      |                                                                         ^
30 warnings generated.


/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I"../inst/include" -I"/data/localhost/ripley/R/test-clang/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/rstan/include' -I'/data/localhost/ripley/R/test-clang/StanHeaders/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include   -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/data/localhost/ripley/R/test-clang/RcppParallel/include -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW   -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c stanExports_estimate_infections.cc -o stanExports_estimate_infections.o
In file included from stanExports_estimate_infections.cc:5:
In file included from ./stanExports_estimate_infections.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from stanExports_estimate_infections.cc:5:
In file included from ./stanExports_estimate_infections.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from stanExports_estimate_infections.cc:5:
In file included from ./stanExports_estimate_infections.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:21:
/data/localhost/ripley/R/test-clang/rstan/include/rstan/io/r_ostream.hpp:47:31: warning: 'rstan::io::r_cout_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual]
   47 |       virtual std::streamsize xsputn(const char_type* s, int n) {
      |                               ^
/usr/local/clang23/bin/../include/c++/v1/streambuf:381:22: note: hidden overloaded virtual function 'std::basic_streambuf<char>::xsputn' declared here: type mismatch at 2nd parameter ('streamsize' (aka 'long') vs 'int')
  381 |   virtual streamsize xsputn(const char_type* __s, streamsize __n) {
      |                      ^
In file included from stanExports_estimate_infections.cc:5:
In file included from ./stanExports_estimate_infections.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:21:
/data/localhost/ripley/R/test-clang/rstan/include/rstan/io/r_ostream.hpp:70:31: warning: 'rstan::io::r_cerr_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual]
   70 |       virtual std::streamsize xsputn(const char_type* s, int n) {
      |                               ^
/usr/local/clang23/bin/../include/c++/v1/streambuf:381:22: note: hidden overloaded virtual function 'std::basic_streambuf<char>::xsputn' declared here: type mismatch at 2nd parameter ('streamsize' (aka 'long') vs 'int')
  381 |   virtual streamsize xsputn(const char_type* __s, streamsize __n) {
      |                      ^
In file included from stanExports_estimate_infections.cc:5:
In file included from ./stanExports_estimate_infections.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
   72 |                         Index replacements = 0;
      |                               ^
In file included from stanExports_estimate_infections.cc:5:
In file included from ./stanExports_estimate_infections.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  246 |   int count = 0;
      |       ^
In file included from stanExports_estimate_infections.cc:5:
In file included from ./stanExports_estimate_infections.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/constraint.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/abs.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__exclude_from_explicit_instantiation__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
   29 | BOOST_MOVE_STD_NS_BEG
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
   21 |    #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
   74 | #  define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
   70 |     _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
      |                                        ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
   51 |   _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push(                                         \
      |   ^
<scratch space>:21:69: note: expanded from here
   21 |  clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
      |                                                                     ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
   61 | BOOST_MOVE_STD_NS_END
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
   22 |    #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
   75 | #  define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
   72 | #  define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
      |                                                   ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
   57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
      |                                                ^
<scratch space>:23:8: note: expanded from here
   23 |  clang attribute _LibcxxExplicitABIAnnotations.pop
      |        ^
In file included from stanExports_estimate_infections.cc:5:
In file included from ./stanExports_estimate_infections.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/constraint.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/abs.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__visibility__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
   29 | BOOST_MOVE_STD_NS_BEG
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
   21 |    #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
   74 | #  define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
   70 |     _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
      |                                        ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
   51 |   _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push(                                         \
      |   ^
<scratch space>:21:110: note: expanded from here
   21 |  clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
      |                                                                                                              ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
   61 | BOOST_MOVE_STD_NS_END
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
   22 |    #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
   75 | #  define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
   72 | #  define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
      |                                                   ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
   57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
      |                                                ^
<scratch space>:23:8: note: expanded from here
   23 |  clang attribute _LibcxxExplicitABIAnnotations.pop
      |        ^
In file included from stanExports_estimate_infections.cc:5:
In file included from ./stanExports_estimate_infections.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/constraint.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/abs.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__abi_tag__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
   29 | BOOST_MOVE_STD_NS_BEG
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
   21 |    #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
   74 | #  define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
   70 |     _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
      |                                        ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
   51 |   _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push(                                         \
      |   ^
<scratch space>:21:136: note: expanded from here
   21 |  clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
      |                                                                                                                                        ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
   61 | BOOST_MOVE_STD_NS_END
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
   22 |    #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
   75 | #  define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
   72 | #  define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
      |                                                   ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
   57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
      |                                                ^
<scratch space>:23:8: note: expanded from here
   23 |  clang attribute _LibcxxExplicitABIAnnotations.pop
      |        ^
In file included from stanExports_estimate_infections.cc:5:
In file included from ./stanExports_estimate_infections.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:34:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token]
  166 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_estimate_infections.cc:5:
In file included from ./stanExports_estimate_infections.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token]
  125 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_estimate_infections.cc:5:
In file included from ./stanExports_estimate_infections.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:131:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token]
   49 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_estimate_infections.cc:5:
In file included from ./stanExports_estimate_infections.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:39:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/linear_algebra.hpp:20:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token]
   75 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_estimate_infections.cc:5:
In file included from ./stanExports_estimate_infections.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:40:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/unscale.hpp:28:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token]
  139 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_estimate_infections.cc:5:
In file included from ./stanExports_estimate_infections.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token]
  120 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_estimate_infections.cc:5:
In file included from ./stanExports_estimate_infections.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:21:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token]
   99 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_estimate_infections.cc:5:
In file included from ./stanExports_estimate_infections.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token]
  495 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_estimate_infections.cc:5:
In file included from ./stanExports_estimate_infections.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:18:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob.hpp:290:
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/student_t_qf.hpp:74:32: warning: unused variable 'function' [-Wunused-variable]
   74 |   static constexpr const char* function = "student_t_qf";
      |                                ^~~~~~~~
In file included from stanExports_estimate_infections.cc:5:
In file included from ./stanExports_estimate_infections.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:49:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:16:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob.hpp:7:
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:52:20: warning: unused variable 'p_val_flip' [-Wunused-variable]
   52 |       const double p_val_flip = p_val < 0.5 ? p_val : 1.0 - p_val;
      |                    ^~~~~~~~~~
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:42:18: warning: unused variable 'sqrt_inv_ibeta_m1' [-Wunused-variable]
   42 |     const double sqrt_inv_ibeta_m1 = sqrt(inv(ibeta_arg) - 1.0);
      |                  ^~~~~~~~~~~~~~~~~
In file included from stanExports_estimate_infections.cc:5:
In file included from ./stanExports_estimate_infections.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:50:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/services/experimental/advi/fullrank.hpp:12:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/variational/advi.hpp:12:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/circular_buffer.hpp:57:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/circular_buffer/details.hpp:22:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/move/move.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/move/iterator.hpp:27:
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/iterator_traits.hpp:63:1: warning: unused attribute '__exclude_from_explicit_instantiation__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
   63 | BOOST_MOVE_STD_NS_BEG
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
   21 |    #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
   74 | #  define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
   70 |     _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
      |                                        ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
   51 |   _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push(                                         \
      |   ^
<scratch space>:9:69: note: expanded from here
    9 |  clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
      |                                                                     ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/iterator_traits.hpp:81:1: note: '#pragma clang attribute push' regions ends here
   81 | BOOST_MOVE_STD_NS_END
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
   22 |    #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
   75 | #  define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
   72 | #  define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
      |                                                   ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
   57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
      |                                                ^
<scratch space>:11:8: note: expanded from here
   11 |  clang attribute _LibcxxExplicitABIAnnotations.pop
      |        ^
In file included from stanExports_estimate_infections.cc:5:
In file included from ./stanExports_estimate_infections.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:50:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/services/experimental/advi/fullrank.hpp:12:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/variational/advi.hpp:12:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/circular_buffer.hpp:57:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/circular_buffer/details.hpp:22:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/move/move.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/move/iterator.hpp:27:
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/iterator_traits.hpp:63:1: warning: unused attribute '__visibility__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
   63 | BOOST_MOVE_STD_NS_BEG
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
   21 |    #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
   74 | #  define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
   70 |     _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
      |                                        ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
   51 |   _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push(                                         \
      |   ^
<scratch space>:9:110: note: expanded from here
    9 |  clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
      |                                                                                                              ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/iterator_traits.hpp:81:1: note: '#pragma clang attribute push' regions ends here
   81 | BOOST_MOVE_STD_NS_END
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
   22 |    #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
   75 | #  define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
   72 | #  define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
      |                                                   ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
   57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
      |                                                ^
<scratch space>:11:8: note: expanded from here
   11 |  clang attribute _LibcxxExplicitABIAnnotations.pop
      |        ^
In file included from stanExports_estimate_infections.cc:5:
In file included from ./stanExports_estimate_infections.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:50:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/services/experimental/advi/fullrank.hpp:12:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/variational/advi.hpp:12:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/circular_buffer.hpp:57:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/circular_buffer/details.hpp:22:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/move/move.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/move/iterator.hpp:27:
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/iterator_traits.hpp:63:1: warning: unused attribute '__abi_tag__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
   63 | BOOST_MOVE_STD_NS_BEG
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
   21 |    #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
   74 | #  define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
   70 |     _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
      |                                        ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
   51 |   _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push(                                         \
      |   ^
<scratch space>:9:136: note: expanded from here
    9 |  clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
      |                                                                                                                                        ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/iterator_traits.hpp:81:1: note: '#pragma clang attribute push' regions ends here
   81 | BOOST_MOVE_STD_NS_END
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
   22 |    #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
   75 | #  define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
   72 | #  define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
      |                                                   ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
   57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
      |                                                ^
<scratch space>:11:8: note: expanded from here
   11 |  clang attribute _LibcxxExplicitABIAnnotations.pop
      |        ^
In file included from stanExports_estimate_infections.cc:5:
In file included from ./stanExports_estimate_infections.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:54:
/data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/services/optimize/newton.hpp:98:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable]
   98 |   int ret = 0;
      |       ^
In file included from stanExports_estimate_infections.cc:5:
In file included from ./stanExports_estimate_infections.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
/data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1252:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable]
 1252 |     int ret = stan::services::error_codes::CONFIG;
      |         ^
In file included from stanExports_estimate_infections.cc:5:
In file included from ./stanExports_estimate_infections.h:25:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/model/model_header.hpp:13:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/model/indexing.hpp:13:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/model/indexing/rvalue_varmat.hpp:7:
/data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/model/indexing/rvalue.hpp:520:22: warning: unused variable 'rows' [-Wunused-variable]
  520 |   const Eigen::Index rows = row_idx.ns_.size();
      |                      ^~~~
/data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/model/indexing/rvalue.hpp:521:22: warning: unused variable 'cols' [-Wunused-variable]
  521 |   const Eigen::Index cols = col_idx.ns_.size();
      |                      ^~~~
In file included from stanExports_estimate_infections.cc:5:
./stanExports_estimate_infections.h:6814:9: warning: variable 'start' set but not used [-Wunused-but-set-variable]
 6814 |     int start = std::numeric_limits<int>::min();
      |         ^
./stanExports_estimate_infections.h:9689:18: warning: variable 'rescaled_rho' set but not used [-Wunused-but-set-variable]
 9689 |           double rescaled_rho = std::numeric_limits<double>::quiet_NaN();
      |                  ^
./stanExports_estimate_infections.h:3148:15: warning: unused variable 'y' [-Wunused-variable]
 3148 |   const auto& y = stan::math::to_ref(y_arg__);
      |               ^
./stanExports_estimate_infections.h:2220:12: note: in instantiation of function template specialization 'model_estimate_infections_namespace::primarycensored_ode<double, Eigen::Matrix<double, -1, 1>, std::vector<double>, std::vector<double>, std::vector<int>, nullptr>' requested here
 2220 |     return primarycensored_ode(t, y, theta, x_r, x_i, pstream__);
      |            ^
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/coupled_ode_system.hpp:72:43: note: in instantiation of function template specialization 'model_estimate_infections_namespace::primarycensored_ode_variadic2_functor__::operator()<double, Eigen::Matrix<double, -1, 1>, std::vector<double>, std::vector<double>, std::vector<int>, nullptr>' requested here
   72 |         [&](const Args&... args) { return f_(t, y, msgs_, args...); },
      |                                           ^
/data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/stepper/dense_output_runge_kutta.hpp:329:13: note: in instantiation of member function 'stan::math::coupled_ode_system_impl<true, model_estimate_infections_namespace::primarycensored_ode_variadic2_functor__, double, const std::vector<double> &, const std::vector<double> &, const std::vector<int> &>::operator()' requested here
  329 |             sys( get_current_state() , get_current_deriv() , m_t );
      |             ^
/data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/integrate/check_adapter.hpp:153:26: note: in instantiation of function template specialization 'boost::numeric::odeint::dense_output_runge_kutta<boost::numeric::odeint::controlled_runge_kutta<boost::numeric::odeint::runge_kutta_dopri5<std::vector<double>>>>::do_step<std::reference_wrapper<stan::math::coupled_ode_system<model_estimate_infections_namespace::primarycensored_ode_variadic2_functor__, double, const std::vector<double> &, const std::vector<double> &, const std::vector<int> &>>>' requested here
  153 |         return m_stepper.do_step(system);
      |                          ^
/data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/integrate/detail/integrate_times.hpp:159:16: note: in instantiation of function template specialization 'boost::numeric::odeint::checked_stepper<boost::numeric::odeint::dense_output_runge_kutta<boost::numeric::odeint::controlled_runge_kutta<boost::numeric::odeint::runge_kutta_dopri5<std::vector<double>>>>, boost::numeric::odeint::max_step_checker>::do_step<std::reference_wrapper<stan::math::coupled_ode_system<model_estimate_infections_namespace::primarycensored_ode_variadic2_functor__, double, const std::vector<double> &, const std::vector<double> &, const std::vector<int> &>>>' requested here
  159 |             st.do_step( system );
      |                ^
/data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/integrate/integrate_times.hpp:51:20: note: (skipping 12 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
   51 |     return detail::integrate_times(
      |                    ^
/data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/services/util/initialize.hpp:94:36: note: in instantiation of function template specialization 'stan::io::random_var_context::random_var_context<model_estimate_infections_namespace::model_estimate_infections, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
   94 |       stan::io::random_var_context random_context(model, rng, init_radius,
      |                                    ^
/data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_estimate_infections_namespace::model_estimate_infections, stan::io::var_context, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
   49 |   std::vector<double> cont_vector = util::initialize(
      |                                           ^
/data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_estimate_infections_namespace::model_estimate_infections>' requested here
  481 |     return_code = stan::services::diagnose::diagnose(model,
      |                                             ^
/data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_estimate_infections_namespace::model_estimate_infections, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
 1215 |     ret = command(args, model_, holder, names_oi_tidx_,
      |           ^
stanExports_estimate_infections.cc:15:73: note: in instantiation of member function 'rstan::stan_fit<model_estimate_infections_namespace::model_estimate_infections, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
   15 |     .method("call_sampler", &rstan::stan_fit<stan_model, stan::rng_t> ::call_sampler)
      |                                                                         ^
In file included from stanExports_estimate_infections.cc:5:
./stanExports_estimate_infections.h:3148:15: warning: unused variable 'y' [-Wunused-variable]
 3148 |   const auto& y = stan::math::to_ref(y_arg__);
      |               ^
./stanExports_estimate_infections.h:2220:12: note: in instantiation of function template specialization 'model_estimate_infections_namespace::primarycensored_ode<double, Eigen::Matrix<stan::math::var_value<double>, -1, 1>, std::vector<stan::math::var_value<double>>, std::vector<double>, std::vector<int>, nullptr>' requested here
 2220 |     return primarycensored_ode(t, y, theta, x_r, x_i, pstream__);
      |            ^
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/functor/coupled_ode_system.hpp:130:38: note: in instantiation of function template specialization 'model_estimate_infections_namespace::primarycensored_ode_variadic2_functor__::operator()<double, Eigen::Matrix<stan::math::var_value<double>, -1, 1>, std::vector<stan::math::var_value<double>>, std::vector<double>, std::vector<int>, nullptr>' requested here
  130 |         [&](auto&&... args) { return f_(t, y_vars, msgs_, args...); },
      |                                      ^
/data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/stepper/dense_output_runge_kutta.hpp:329:13: note: in instantiation of member function 'stan::math::coupled_ode_system_impl<false, model_estimate_infections_namespace::primarycensored_ode_variadic2_functor__, stan::math::var_value<double>, const std::vector<stan::math::var_value<double>> &, const std::vector<double> &, const std::vector<int> &>::operator()' requested here
  329 |             sys( get_current_state() , get_current_deriv() , m_t );
      |             ^
/data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/integrate/check_adapter.hpp:153:26: note: in instantiation of function template specialization 'boost::numeric::odeint::dense_output_runge_kutta<boost::numeric::odeint::controlled_runge_kutta<boost::numeric::odeint::runge_kutta_dopri5<std::vector<double>>>>::do_step<std::reference_wrapper<stan::math::coupled_ode_system<model_estimate_infections_namespace::primarycensored_ode_variadic2_functor__, stan::math::var_value<double>, const std::vector<stan::math::var_value<double>> &, const std::vector<double> &, const std::vector<int> &>>>' requested here
  153 |         return m_stepper.do_step(system);
      |                          ^
/data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/integrate/detail/integrate_times.hpp:159:16: note: in instantiation of function template specialization 'boost::numeric::odeint::checked_stepper<boost::numeric::odeint::dense_output_runge_kutta<boost::numeric::odeint::controlled_runge_kutta<boost::numeric::odeint::runge_kutta_dopri5<std::vector<double>>>>, boost::numeric::odeint::max_step_checker>::do_step<std::reference_wrapper<stan::math::coupled_ode_system<model_estimate_infections_namespace::primarycensored_ode_variadic2_functor__, stan::math::var_value<double>, const std::vector<stan::math::var_value<double>> &, const std::vector<double> &, const std::vector<int> &>>>' requested here
  159 |             st.do_step( system );
      |                ^
/data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/integrate/integrate_times.hpp:51:20: note: (skipping 12 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
   51 |     return detail::integrate_times(
      |                    ^
/data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/services/util/initialize.hpp:169:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad<true, true, model_estimate_infections_namespace::model_estimate_infections>' requested here
  169 |       log_prob = stan::model::log_prob_grad<true, Jacobian>(
      |                               ^
/data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_estimate_infections_namespace::model_estimate_infections, stan::io::var_context, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
   49 |   std::vector<double> cont_vector = util::initialize(
      |                                           ^
/data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_estimate_infections_namespace::model_estimate_infections>' requested here
  481 |     return_code = stan::services::diagnose::diagnose(model,
      |                                             ^
/data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_estimate_infections_namespace::model_estimate_infections, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
 1215 |     ret = command(args, model_, holder, names_oi_tidx_,
      |           ^
stanExports_estimate_infections.cc:15:73: note: in instantiation of member function 'rstan::stan_fit<model_estimate_infections_namespace::model_estimate_infections, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
   15 |     .method("call_sampler", &rstan::stan_fit<stan_model, stan::rng_t> ::call_sampler)
      |                                                                         ^
32 warnings generated.


/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I"../inst/include" -I"/data/localhost/ripley/R/test-clang/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/rstan/include' -I'/data/localhost/ripley/R/test-clang/StanHeaders/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include   -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/data/localhost/ripley/R/test-clang/RcppParallel/include -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW   -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c stanExports_estimate_secondary.cc -o stanExports_estimate_secondary.o
In file included from stanExports_estimate_secondary.cc:5:
In file included from ./stanExports_estimate_secondary.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from stanExports_estimate_secondary.cc:5:
In file included from ./stanExports_estimate_secondary.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from stanExports_estimate_secondary.cc:5:
In file included from ./stanExports_estimate_secondary.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:21:
/data/localhost/ripley/R/test-clang/rstan/include/rstan/io/r_ostream.hpp:47:31: warning: 'rstan::io::r_cout_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual]
   47 |       virtual std::streamsize xsputn(const char_type* s, int n) {
      |                               ^
/usr/local/clang23/bin/../include/c++/v1/streambuf:381:22: note: hidden overloaded virtual function 'std::basic_streambuf<char>::xsputn' declared here: type mismatch at 2nd parameter ('streamsize' (aka 'long') vs 'int')
  381 |   virtual streamsize xsputn(const char_type* __s, streamsize __n) {
      |                      ^
In file included from stanExports_estimate_secondary.cc:5:
In file included from ./stanExports_estimate_secondary.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:21:
/data/localhost/ripley/R/test-clang/rstan/include/rstan/io/r_ostream.hpp:70:31: warning: 'rstan::io::r_cerr_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual]
   70 |       virtual std::streamsize xsputn(const char_type* s, int n) {
      |                               ^
/usr/local/clang23/bin/../include/c++/v1/streambuf:381:22: note: hidden overloaded virtual function 'std::basic_streambuf<char>::xsputn' declared here: type mismatch at 2nd parameter ('streamsize' (aka 'long') vs 'int')
  381 |   virtual streamsize xsputn(const char_type* __s, streamsize __n) {
      |                      ^
In file included from stanExports_estimate_secondary.cc:5:
In file included from ./stanExports_estimate_secondary.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
   72 |                         Index replacements = 0;
      |                               ^
In file included from stanExports_estimate_secondary.cc:5:
In file included from ./stanExports_estimate_secondary.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  246 |   int count = 0;
      |       ^
In file included from stanExports_estimate_secondary.cc:5:
In file included from ./stanExports_estimate_secondary.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/constraint.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/abs.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__exclude_from_explicit_instantiation__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
   29 | BOOST_MOVE_STD_NS_BEG
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
   21 |    #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
   74 | #  define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
   70 |     _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
      |                                        ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
   51 |   _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push(                                         \
      |   ^
<scratch space>:21:69: note: expanded from here
   21 |  clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
      |                                                                     ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
   61 | BOOST_MOVE_STD_NS_END
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
   22 |    #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
   75 | #  define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
   72 | #  define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
      |                                                   ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
   57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
      |                                                ^
<scratch space>:23:8: note: expanded from here
   23 |  clang attribute _LibcxxExplicitABIAnnotations.pop
      |        ^
In file included from stanExports_estimate_secondary.cc:5:
In file included from ./stanExports_estimate_secondary.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/constraint.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/abs.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__visibility__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
   29 | BOOST_MOVE_STD_NS_BEG
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
   21 |    #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
   74 | #  define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
   70 |     _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
      |                                        ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
   51 |   _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push(                                         \
      |   ^
<scratch space>:21:110: note: expanded from here
   21 |  clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
      |                                                                                                              ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
   61 | BOOST_MOVE_STD_NS_END
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
   22 |    #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
   75 | #  define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
   72 | #  define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
      |                                                   ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
   57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
      |                                                ^
<scratch space>:23:8: note: expanded from here
   23 |  clang attribute _LibcxxExplicitABIAnnotations.pop
      |        ^
In file included from stanExports_estimate_secondary.cc:5:
In file included from ./stanExports_estimate_secondary.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/constraint.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/abs.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__abi_tag__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
   29 | BOOST_MOVE_STD_NS_BEG
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
   21 |    #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
   74 | #  define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
   70 |     _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
      |                                        ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
   51 |   _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push(                                         \
      |   ^
<scratch space>:21:136: note: expanded from here
   21 |  clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
      |                                                                                                                                        ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
   61 | BOOST_MOVE_STD_NS_END
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
   22 |    #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
   75 | #  define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
   72 | #  define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
      |                                                   ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
   57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
      |                                                ^
<scratch space>:23:8: note: expanded from here
   23 |  clang attribute _LibcxxExplicitABIAnnotations.pop
      |        ^
In file included from stanExports_estimate_secondary.cc:5:
In file included from ./stanExports_estimate_secondary.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:34:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token]
  166 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_estimate_secondary.cc:5:
In file included from ./stanExports_estimate_secondary.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token]
  125 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_estimate_secondary.cc:5:
In file included from ./stanExports_estimate_secondary.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:131:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token]
   49 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_estimate_secondary.cc:5:
In file included from ./stanExports_estimate_secondary.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:39:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/linear_algebra.hpp:20:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token]
   75 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_estimate_secondary.cc:5:
In file included from ./stanExports_estimate_secondary.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:40:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/unscale.hpp:28:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token]
  139 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_estimate_secondary.cc:5:
In file included from ./stanExports_estimate_secondary.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token]
  120 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_estimate_secondary.cc:5:
In file included from ./stanExports_estimate_secondary.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:21:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token]
   99 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_estimate_secondary.cc:5:
In file included from ./stanExports_estimate_secondary.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token]
  495 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_estimate_secondary.cc:5:
In file included from ./stanExports_estimate_secondary.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:18:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob.hpp:290:
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/student_t_qf.hpp:74:32: warning: unused variable 'function' [-Wunused-variable]
   74 |   static constexpr const char* function = "student_t_qf";
      |                                ^~~~~~~~
In file included from stanExports_estimate_secondary.cc:5:
In file included from ./stanExports_estimate_secondary.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:49:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:16:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob.hpp:7:
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:52:20: warning: unused variable 'p_val_flip' [-Wunused-variable]
   52 |       const double p_val_flip = p_val < 0.5 ? p_val : 1.0 - p_val;
      |                    ^~~~~~~~~~
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:42:18: warning: unused variable 'sqrt_inv_ibeta_m1' [-Wunused-variable]
   42 |     const double sqrt_inv_ibeta_m1 = sqrt(inv(ibeta_arg) - 1.0);
      |                  ^~~~~~~~~~~~~~~~~
In file included from stanExports_estimate_secondary.cc:5:
In file included from ./stanExports_estimate_secondary.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:50:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/services/experimental/advi/fullrank.hpp:12:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/variational/advi.hpp:12:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/circular_buffer.hpp:57:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/circular_buffer/details.hpp:22:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/move/move.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/move/iterator.hpp:27:
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/iterator_traits.hpp:63:1: warning: unused attribute '__exclude_from_explicit_instantiation__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
   63 | BOOST_MOVE_STD_NS_BEG
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
   21 |    #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
   74 | #  define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
   70 |     _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
      |                                        ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
   51 |   _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push(                                         \
      |   ^
<scratch space>:9:69: note: expanded from here
    9 |  clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
      |                                                                     ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/iterator_traits.hpp:81:1: note: '#pragma clang attribute push' regions ends here
   81 | BOOST_MOVE_STD_NS_END
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
   22 |    #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
   75 | #  define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
   72 | #  define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
      |                                                   ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
   57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
      |                                                ^
<scratch space>:11:8: note: expanded from here
   11 |  clang attribute _LibcxxExplicitABIAnnotations.pop
      |        ^
In file included from stanExports_estimate_secondary.cc:5:
In file included from ./stanExports_estimate_secondary.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:50:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/services/experimental/advi/fullrank.hpp:12:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/variational/advi.hpp:12:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/circular_buffer.hpp:57:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/circular_buffer/details.hpp:22:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/move/move.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/move/iterator.hpp:27:
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/iterator_traits.hpp:63:1: warning: unused attribute '__visibility__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
   63 | BOOST_MOVE_STD_NS_BEG
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
   21 |    #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
   74 | #  define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
   70 |     _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
      |                                        ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
   51 |   _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push(                                         \
      |   ^
<scratch space>:9:110: note: expanded from here
    9 |  clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
      |                                                                                                              ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/iterator_traits.hpp:81:1: note: '#pragma clang attribute push' regions ends here
   81 | BOOST_MOVE_STD_NS_END
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
   22 |    #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
   75 | #  define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
   72 | #  define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
      |                                                   ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
   57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
      |                                                ^
<scratch space>:11:8: note: expanded from here
   11 |  clang attribute _LibcxxExplicitABIAnnotations.pop
      |        ^
In file included from stanExports_estimate_secondary.cc:5:
In file included from ./stanExports_estimate_secondary.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:50:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/services/experimental/advi/fullrank.hpp:12:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/variational/advi.hpp:12:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/circular_buffer.hpp:57:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/circular_buffer/details.hpp:22:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/move/move.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/move/iterator.hpp:27:
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/iterator_traits.hpp:63:1: warning: unused attribute '__abi_tag__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
   63 | BOOST_MOVE_STD_NS_BEG
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
   21 |    #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
   74 | #  define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
   70 |     _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
      |                                        ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
   51 |   _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push(                                         \
      |   ^
<scratch space>:9:136: note: expanded from here
    9 |  clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
      |                                                                                                                                        ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/iterator_traits.hpp:81:1: note: '#pragma clang attribute push' regions ends here
   81 | BOOST_MOVE_STD_NS_END
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
   22 |    #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
   75 | #  define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
   72 | #  define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
      |                                                   ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
   57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
      |                                                ^
<scratch space>:11:8: note: expanded from here
   11 |  clang attribute _LibcxxExplicitABIAnnotations.pop
      |        ^
In file included from stanExports_estimate_secondary.cc:5:
In file included from ./stanExports_estimate_secondary.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:54:
/data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/services/optimize/newton.hpp:98:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable]
   98 |   int ret = 0;
      |       ^
In file included from stanExports_estimate_secondary.cc:5:
In file included from ./stanExports_estimate_secondary.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
/data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1252:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable]
 1252 |     int ret = stan::services::error_codes::CONFIG;
      |         ^
In file included from stanExports_estimate_secondary.cc:5:
In file included from ./stanExports_estimate_secondary.h:25:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/model/model_header.hpp:13:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/model/indexing.hpp:13:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/model/indexing/rvalue_varmat.hpp:7:
/data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/model/indexing/rvalue.hpp:520:22: warning: unused variable 'rows' [-Wunused-variable]
  520 |   const Eigen::Index rows = row_idx.ns_.size();
      |                      ^~~~
/data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/model/indexing/rvalue.hpp:521:22: warning: unused variable 'cols' [-Wunused-variable]
  521 |   const Eigen::Index cols = col_idx.ns_.size();
      |                      ^~~~
In file included from stanExports_estimate_secondary.cc:5:
./stanExports_estimate_secondary.h:2498:15: warning: unused variable 'y' [-Wunused-variable]
 2498 |   const auto& y = stan::math::to_ref(y_arg__);
      |               ^
./stanExports_estimate_secondary.h:1570:12: note: in instantiation of function template specialization 'model_estimate_secondary_namespace::primarycensored_ode<double, Eigen::Matrix<double, -1, 1>, std::vector<double>, std::vector<double>, std::vector<int>, nullptr>' requested here
 1570 |     return primarycensored_ode(t, y, theta, x_r, x_i, pstream__);
      |            ^
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/coupled_ode_system.hpp:72:43: note: in instantiation of function template specialization 'model_estimate_secondary_namespace::primarycensored_ode_variadic2_functor__::operator()<double, Eigen::Matrix<double, -1, 1>, std::vector<double>, std::vector<double>, std::vector<int>, nullptr>' requested here
   72 |         [&](const Args&... args) { return f_(t, y, msgs_, args...); },
      |                                           ^
/data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/stepper/dense_output_runge_kutta.hpp:329:13: note: in instantiation of member function 'stan::math::coupled_ode_system_impl<true, model_estimate_secondary_namespace::primarycensored_ode_variadic2_functor__, double, const std::vector<double> &, const std::vector<double> &, const std::vector<int> &>::operator()' requested here
  329 |             sys( get_current_state() , get_current_deriv() , m_t );
      |             ^
/data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/integrate/check_adapter.hpp:153:26: note: in instantiation of function template specialization 'boost::numeric::odeint::dense_output_runge_kutta<boost::numeric::odeint::controlled_runge_kutta<boost::numeric::odeint::runge_kutta_dopri5<std::vector<double>>>>::do_step<std::reference_wrapper<stan::math::coupled_ode_system<model_estimate_secondary_namespace::primarycensored_ode_variadic2_functor__, double, const std::vector<double> &, const std::vector<double> &, const std::vector<int> &>>>' requested here
  153 |         return m_stepper.do_step(system);
      |                          ^
/data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/integrate/detail/integrate_times.hpp:159:16: note: in instantiation of function template specialization 'boost::numeric::odeint::checked_stepper<boost::numeric::odeint::dense_output_runge_kutta<boost::numeric::odeint::controlled_runge_kutta<boost::numeric::odeint::runge_kutta_dopri5<std::vector<double>>>>, boost::numeric::odeint::max_step_checker>::do_step<std::reference_wrapper<stan::math::coupled_ode_system<model_estimate_secondary_namespace::primarycensored_ode_variadic2_functor__, double, const std::vector<double> &, const std::vector<double> &, const std::vector<int> &>>>' requested here
  159 |             st.do_step( system );
      |                ^
/data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/integrate/integrate_times.hpp:51:20: note: (skipping 12 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
   51 |     return detail::integrate_times(
      |                    ^
/data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/services/util/initialize.hpp:94:36: note: in instantiation of function template specialization 'stan::io::random_var_context::random_var_context<model_estimate_secondary_namespace::model_estimate_secondary, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
   94 |       stan::io::random_var_context random_context(model, rng, init_radius,
      |                                    ^
/data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_estimate_secondary_namespace::model_estimate_secondary, stan::io::var_context, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
   49 |   std::vector<double> cont_vector = util::initialize(
      |                                           ^
/data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_estimate_secondary_namespace::model_estimate_secondary>' requested here
  481 |     return_code = stan::services::diagnose::diagnose(model,
      |                                             ^
/data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_estimate_secondary_namespace::model_estimate_secondary, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
 1215 |     ret = command(args, model_, holder, names_oi_tidx_,
      |           ^
stanExports_estimate_secondary.cc:15:73: note: in instantiation of member function 'rstan::stan_fit<model_estimate_secondary_namespace::model_estimate_secondary, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
   15 |     .method("call_sampler", &rstan::stan_fit<stan_model, stan::rng_t> ::call_sampler)
      |                                                                         ^
In file included from stanExports_estimate_secondary.cc:5:
./stanExports_estimate_secondary.h:2498:15: warning: unused variable 'y' [-Wunused-variable]
 2498 |   const auto& y = stan::math::to_ref(y_arg__);
      |               ^
./stanExports_estimate_secondary.h:1570:12: note: in instantiation of function template specialization 'model_estimate_secondary_namespace::primarycensored_ode<double, Eigen::Matrix<stan::math::var_value<double>, -1, 1>, std::vector<stan::math::var_value<double>>, std::vector<double>, std::vector<int>, nullptr>' requested here
 1570 |     return primarycensored_ode(t, y, theta, x_r, x_i, pstream__);
      |            ^
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/functor/coupled_ode_system.hpp:130:38: note: in instantiation of function template specialization 'model_estimate_secondary_namespace::primarycensored_ode_variadic2_functor__::operator()<double, Eigen::Matrix<stan::math::var_value<double>, -1, 1>, std::vector<stan::math::var_value<double>>, std::vector<double>, std::vector<int>, nullptr>' requested here
  130 |         [&](auto&&... args) { return f_(t, y_vars, msgs_, args...); },
      |                                      ^
/data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/stepper/dense_output_runge_kutta.hpp:329:13: note: in instantiation of member function 'stan::math::coupled_ode_system_impl<false, model_estimate_secondary_namespace::primarycensored_ode_variadic2_functor__, stan::math::var_value<double>, const std::vector<stan::math::var_value<double>> &, const std::vector<double> &, const std::vector<int> &>::operator()' requested here
  329 |             sys( get_current_state() , get_current_deriv() , m_t );
      |             ^
/data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/integrate/check_adapter.hpp:153:26: note: in instantiation of function template specialization 'boost::numeric::odeint::dense_output_runge_kutta<boost::numeric::odeint::controlled_runge_kutta<boost::numeric::odeint::runge_kutta_dopri5<std::vector<double>>>>::do_step<std::reference_wrapper<stan::math::coupled_ode_system<model_estimate_secondary_namespace::primarycensored_ode_variadic2_functor__, stan::math::var_value<double>, const std::vector<stan::math::var_value<double>> &, const std::vector<double> &, const std::vector<int> &>>>' requested here
  153 |         return m_stepper.do_step(system);
      |                          ^
/data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/integrate/detail/integrate_times.hpp:159:16: note: in instantiation of function template specialization 'boost::numeric::odeint::checked_stepper<boost::numeric::odeint::dense_output_runge_kutta<boost::numeric::odeint::controlled_runge_kutta<boost::numeric::odeint::runge_kutta_dopri5<std::vector<double>>>>, boost::numeric::odeint::max_step_checker>::do_step<std::reference_wrapper<stan::math::coupled_ode_system<model_estimate_secondary_namespace::primarycensored_ode_variadic2_functor__, stan::math::var_value<double>, const std::vector<stan::math::var_value<double>> &, const std::vector<double> &, const std::vector<int> &>>>' requested here
  159 |             st.do_step( system );
      |                ^
/data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/integrate/integrate_times.hpp:51:20: note: (skipping 12 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
   51 |     return detail::integrate_times(
      |                    ^
/data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/services/util/initialize.hpp:169:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad<true, true, model_estimate_secondary_namespace::model_estimate_secondary>' requested here
  169 |       log_prob = stan::model::log_prob_grad<true, Jacobian>(
      |                               ^
/data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_estimate_secondary_namespace::model_estimate_secondary, stan::io::var_context, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
   49 |   std::vector<double> cont_vector = util::initialize(
      |                                           ^
/data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_estimate_secondary_namespace::model_estimate_secondary>' requested here
  481 |     return_code = stan::services::diagnose::diagnose(model,
      |                                             ^
/data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_estimate_secondary_namespace::model_estimate_secondary, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
 1215 |     ret = command(args, model_, holder, names_oi_tidx_,
      |           ^
stanExports_estimate_secondary.cc:15:73: note: in instantiation of member function 'rstan::stan_fit<model_estimate_secondary_namespace::model_estimate_secondary, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
   15 |     .method("call_sampler", &rstan::stan_fit<stan_model, stan::rng_t> ::call_sampler)
      |                                                                         ^
30 warnings generated.


/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I"../inst/include" -I"/data/localhost/ripley/R/test-clang/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/rstan/include' -I'/data/localhost/ripley/R/test-clang/StanHeaders/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include   -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/data/localhost/ripley/R/test-clang/RcppParallel/include -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW   -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c stanExports_estimate_truncation.cc -o stanExports_estimate_truncation.o
In file included from stanExports_estimate_truncation.cc:5:
In file included from ./stanExports_estimate_truncation.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from stanExports_estimate_truncation.cc:5:
In file included from ./stanExports_estimate_truncation.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from stanExports_estimate_truncation.cc:5:
In file included from ./stanExports_estimate_truncation.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:21:
/data/localhost/ripley/R/test-clang/rstan/include/rstan/io/r_ostream.hpp:47:31: warning: 'rstan::io::r_cout_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual]
   47 |       virtual std::streamsize xsputn(const char_type* s, int n) {
      |                               ^
/usr/local/clang23/bin/../include/c++/v1/streambuf:381:22: note: hidden overloaded virtual function 'std::basic_streambuf<char>::xsputn' declared here: type mismatch at 2nd parameter ('streamsize' (aka 'long') vs 'int')
  381 |   virtual streamsize xsputn(const char_type* __s, streamsize __n) {
      |                      ^
In file included from stanExports_estimate_truncation.cc:5:
In file included from ./stanExports_estimate_truncation.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:21:
/data/localhost/ripley/R/test-clang/rstan/include/rstan/io/r_ostream.hpp:70:31: warning: 'rstan::io::r_cerr_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual]
   70 |       virtual std::streamsize xsputn(const char_type* s, int n) {
      |                               ^
/usr/local/clang23/bin/../include/c++/v1/streambuf:381:22: note: hidden overloaded virtual function 'std::basic_streambuf<char>::xsputn' declared here: type mismatch at 2nd parameter ('streamsize' (aka 'long') vs 'int')
  381 |   virtual streamsize xsputn(const char_type* __s, streamsize __n) {
      |                      ^
In file included from stanExports_estimate_truncation.cc:5:
In file included from ./stanExports_estimate_truncation.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
   72 |                         Index replacements = 0;
      |                               ^
In file included from stanExports_estimate_truncation.cc:5:
In file included from ./stanExports_estimate_truncation.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  246 |   int count = 0;
      |       ^
In file included from stanExports_estimate_truncation.cc:5:
In file included from ./stanExports_estimate_truncation.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/constraint.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/abs.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__exclude_from_explicit_instantiation__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
   29 | BOOST_MOVE_STD_NS_BEG
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
   21 |    #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
   74 | #  define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
   70 |     _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
      |                                        ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
   51 |   _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push(                                         \
      |   ^
<scratch space>:21:69: note: expanded from here
   21 |  clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
      |                                                                     ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
   61 | BOOST_MOVE_STD_NS_END
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
   22 |    #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
   75 | #  define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
   72 | #  define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
      |                                                   ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
   57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
      |                                                ^
<scratch space>:23:8: note: expanded from here
   23 |  clang attribute _LibcxxExplicitABIAnnotations.pop
      |        ^
In file included from stanExports_estimate_truncation.cc:5:
In file included from ./stanExports_estimate_truncation.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/constraint.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/abs.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__visibility__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
   29 | BOOST_MOVE_STD_NS_BEG
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
   21 |    #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
   74 | #  define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
   70 |     _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
      |                                        ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
   51 |   _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push(                                         \
      |   ^
<scratch space>:21:110: note: expanded from here
   21 |  clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
      |                                                                                                              ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
   61 | BOOST_MOVE_STD_NS_END
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
   22 |    #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
   75 | #  define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
   72 | #  define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
      |                                                   ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
   57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
      |                                                ^
<scratch space>:23:8: note: expanded from here
   23 |  clang attribute _LibcxxExplicitABIAnnotations.pop
      |        ^
In file included from stanExports_estimate_truncation.cc:5:
In file included from ./stanExports_estimate_truncation.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/constraint.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/abs.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__abi_tag__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
   29 | BOOST_MOVE_STD_NS_BEG
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
   21 |    #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
   74 | #  define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
   70 |     _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
      |                                        ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
   51 |   _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push(                                         \
      |   ^
<scratch space>:21:136: note: expanded from here
   21 |  clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
      |                                                                                                                                        ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
   61 | BOOST_MOVE_STD_NS_END
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
   22 |    #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
   75 | #  define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
   72 | #  define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
      |                                                   ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
   57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
      |                                                ^
<scratch space>:23:8: note: expanded from here
   23 |  clang attribute _LibcxxExplicitABIAnnotations.pop
      |        ^
In file included from stanExports_estimate_truncation.cc:5:
In file included from ./stanExports_estimate_truncation.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:34:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token]
  166 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_estimate_truncation.cc:5:
In file included from ./stanExports_estimate_truncation.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token]
  125 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_estimate_truncation.cc:5:
In file included from ./stanExports_estimate_truncation.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:131:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token]
   49 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_estimate_truncation.cc:5:
In file included from ./stanExports_estimate_truncation.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:39:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/linear_algebra.hpp:20:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token]
   75 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_estimate_truncation.cc:5:
In file included from ./stanExports_estimate_truncation.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:40:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/unscale.hpp:28:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token]
  139 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_estimate_truncation.cc:5:
In file included from ./stanExports_estimate_truncation.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token]
  120 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_estimate_truncation.cc:5:
In file included from ./stanExports_estimate_truncation.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:21:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token]
   99 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_estimate_truncation.cc:5:
In file included from ./stanExports_estimate_truncation.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token]
  495 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_estimate_truncation.cc:5:
In file included from ./stanExports_estimate_truncation.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:18:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob.hpp:290:
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/student_t_qf.hpp:74:32: warning: unused variable 'function' [-Wunused-variable]
   74 |   static constexpr const char* function = "student_t_qf";
      |                                ^~~~~~~~
In file included from stanExports_estimate_truncation.cc:5:
In file included from ./stanExports_estimate_truncation.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:49:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:16:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob.hpp:7:
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:52:20: warning: unused variable 'p_val_flip' [-Wunused-variable]
   52 |       const double p_val_flip = p_val < 0.5 ? p_val : 1.0 - p_val;
      |                    ^~~~~~~~~~
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:42:18: warning: unused variable 'sqrt_inv_ibeta_m1' [-Wunused-variable]
   42 |     const double sqrt_inv_ibeta_m1 = sqrt(inv(ibeta_arg) - 1.0);
      |                  ^~~~~~~~~~~~~~~~~
In file included from stanExports_estimate_truncation.cc:5:
In file included from ./stanExports_estimate_truncation.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:50:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/services/experimental/advi/fullrank.hpp:12:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/variational/advi.hpp:12:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/circular_buffer.hpp:57:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/circular_buffer/details.hpp:22:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/move/move.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/move/iterator.hpp:27:
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/iterator_traits.hpp:63:1: warning: unused attribute '__exclude_from_explicit_instantiation__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
   63 | BOOST_MOVE_STD_NS_BEG
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
   21 |    #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
   74 | #  define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
   70 |     _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
      |                                        ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
   51 |   _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push(                                         \
      |   ^
<scratch space>:9:69: note: expanded from here
    9 |  clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
      |                                                                     ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/iterator_traits.hpp:81:1: note: '#pragma clang attribute push' regions ends here
   81 | BOOST_MOVE_STD_NS_END
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
   22 |    #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
   75 | #  define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
   72 | #  define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
      |                                                   ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
   57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
      |                                                ^
<scratch space>:11:8: note: expanded from here
   11 |  clang attribute _LibcxxExplicitABIAnnotations.pop
      |        ^
In file included from stanExports_estimate_truncation.cc:5:
In file included from ./stanExports_estimate_truncation.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:50:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/services/experimental/advi/fullrank.hpp:12:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/variational/advi.hpp:12:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/circular_buffer.hpp:57:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/circular_buffer/details.hpp:22:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/move/move.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/move/iterator.hpp:27:
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/iterator_traits.hpp:63:1: warning: unused attribute '__visibility__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
   63 | BOOST_MOVE_STD_NS_BEG
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
   21 |    #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
   74 | #  define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
   70 |     _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
      |                                        ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
   51 |   _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push(                                         \
      |   ^
<scratch space>:9:110: note: expanded from here
    9 |  clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
      |                                                                                                              ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/iterator_traits.hpp:81:1: note: '#pragma clang attribute push' regions ends here
   81 | BOOST_MOVE_STD_NS_END
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
   22 |    #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
   75 | #  define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
   72 | #  define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
      |                                                   ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
   57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
      |                                                ^
<scratch space>:11:8: note: expanded from here
   11 |  clang attribute _LibcxxExplicitABIAnnotations.pop
      |        ^
In file included from stanExports_estimate_truncation.cc:5:
In file included from ./stanExports_estimate_truncation.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:50:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/services/experimental/advi/fullrank.hpp:12:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/variational/advi.hpp:12:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/circular_buffer.hpp:57:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/circular_buffer/details.hpp:22:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/move/move.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/move/iterator.hpp:27:
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/iterator_traits.hpp:63:1: warning: unused attribute '__abi_tag__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
   63 | BOOST_MOVE_STD_NS_BEG
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
   21 |    #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
   74 | #  define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
   70 |     _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
      |                                        ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
   51 |   _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push(                                         \
      |   ^
<scratch space>:9:136: note: expanded from here
    9 |  clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
      |                                                                                                                                        ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/iterator_traits.hpp:81:1: note: '#pragma clang attribute push' regions ends here
   81 | BOOST_MOVE_STD_NS_END
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
   22 |    #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
   75 | #  define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
   72 | #  define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
      |                                                   ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
   57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
      |                                                ^
<scratch space>:11:8: note: expanded from here
   11 |  clang attribute _LibcxxExplicitABIAnnotations.pop
      |        ^
In file included from stanExports_estimate_truncation.cc:5:
In file included from ./stanExports_estimate_truncation.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:54:
/data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/services/optimize/newton.hpp:98:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable]
   98 |   int ret = 0;
      |       ^
In file included from stanExports_estimate_truncation.cc:5:
In file included from ./stanExports_estimate_truncation.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
/data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1252:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable]
 1252 |     int ret = stan::services::error_codes::CONFIG;
      |         ^
In file included from stanExports_estimate_truncation.cc:5:
In file included from ./stanExports_estimate_truncation.h:25:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/model/model_header.hpp:13:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/model/indexing.hpp:13:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/model/indexing/rvalue_varmat.hpp:7:
/data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/model/indexing/rvalue.hpp:520:22: warning: unused variable 'rows' [-Wunused-variable]
  520 |   const Eigen::Index rows = row_idx.ns_.size();
      |                      ^~~~
/data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/model/indexing/rvalue.hpp:521:22: warning: unused variable 'cols' [-Wunused-variable]
  521 |   const Eigen::Index cols = col_idx.ns_.size();
      |                      ^~~~
In file included from stanExports_estimate_truncation.cc:5:
./stanExports_estimate_truncation.h:2445:15: warning: unused variable 'y' [-Wunused-variable]
 2445 |   const auto& y = stan::math::to_ref(y_arg__);
      |               ^
./stanExports_estimate_truncation.h:1517:12: note: in instantiation of function template specialization 'model_estimate_truncation_namespace::primarycensored_ode<double, Eigen::Matrix<double, -1, 1>, std::vector<double>, std::vector<double>, std::vector<int>, nullptr>' requested here
 1517 |     return primarycensored_ode(t, y, theta, x_r, x_i, pstream__);
      |            ^
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/coupled_ode_system.hpp:72:43: note: in instantiation of function template specialization 'model_estimate_truncation_namespace::primarycensored_ode_variadic2_functor__::operator()<double, Eigen::Matrix<double, -1, 1>, std::vector<double>, std::vector<double>, std::vector<int>, nullptr>' requested here
   72 |         [&](const Args&... args) { return f_(t, y, msgs_, args...); },
      |                                           ^
/data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/stepper/dense_output_runge_kutta.hpp:329:13: note: in instantiation of member function 'stan::math::coupled_ode_system_impl<true, model_estimate_truncation_namespace::primarycensored_ode_variadic2_functor__, double, const std::vector<double> &, const std::vector<double> &, const std::vector<int> &>::operator()' requested here
  329 |             sys( get_current_state() , get_current_deriv() , m_t );
      |             ^
/data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/integrate/check_adapter.hpp:153:26: note: in instantiation of function template specialization 'boost::numeric::odeint::dense_output_runge_kutta<boost::numeric::odeint::controlled_runge_kutta<boost::numeric::odeint::runge_kutta_dopri5<std::vector<double>>>>::do_step<std::reference_wrapper<stan::math::coupled_ode_system<model_estimate_truncation_namespace::primarycensored_ode_variadic2_functor__, double, const std::vector<double> &, const std::vector<double> &, const std::vector<int> &>>>' requested here
  153 |         return m_stepper.do_step(system);
      |                          ^
/data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/integrate/detail/integrate_times.hpp:159:16: note: in instantiation of function template specialization 'boost::numeric::odeint::checked_stepper<boost::numeric::odeint::dense_output_runge_kutta<boost::numeric::odeint::controlled_runge_kutta<boost::numeric::odeint::runge_kutta_dopri5<std::vector<double>>>>, boost::numeric::odeint::max_step_checker>::do_step<std::reference_wrapper<stan::math::coupled_ode_system<model_estimate_truncation_namespace::primarycensored_ode_variadic2_functor__, double, const std::vector<double> &, const std::vector<double> &, const std::vector<int> &>>>' requested here
  159 |             st.do_step( system );
      |                ^
/data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/integrate/integrate_times.hpp:51:20: note: (skipping 12 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
   51 |     return detail::integrate_times(
      |                    ^
/data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/services/util/initialize.hpp:94:36: note: in instantiation of function template specialization 'stan::io::random_var_context::random_var_context<model_estimate_truncation_namespace::model_estimate_truncation, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
   94 |       stan::io::random_var_context random_context(model, rng, init_radius,
      |                                    ^
/data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_estimate_truncation_namespace::model_estimate_truncation, stan::io::var_context, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
   49 |   std::vector<double> cont_vector = util::initialize(
      |                                           ^
/data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_estimate_truncation_namespace::model_estimate_truncation>' requested here
  481 |     return_code = stan::services::diagnose::diagnose(model,
      |                                             ^
/data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_estimate_truncation_namespace::model_estimate_truncation, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
 1215 |     ret = command(args, model_, holder, names_oi_tidx_,
      |           ^
stanExports_estimate_truncation.cc:15:73: note: in instantiation of member function 'rstan::stan_fit<model_estimate_truncation_namespace::model_estimate_truncation, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
   15 |     .method("call_sampler", &rstan::stan_fit<stan_model, stan::rng_t> ::call_sampler)
      |                                                                         ^
In file included from stanExports_estimate_truncation.cc:5:
./stanExports_estimate_truncation.h:2445:15: warning: unused variable 'y' [-Wunused-variable]
 2445 |   const auto& y = stan::math::to_ref(y_arg__);
      |               ^
./stanExports_estimate_truncation.h:1517:12: note: in instantiation of function template specialization 'model_estimate_truncation_namespace::primarycensored_ode<double, Eigen::Matrix<stan::math::var_value<double>, -1, 1>, std::vector<stan::math::var_value<double>>, std::vector<double>, std::vector<int>, nullptr>' requested here
 1517 |     return primarycensored_ode(t, y, theta, x_r, x_i, pstream__);
      |            ^
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/functor/coupled_ode_system.hpp:130:38: note: in instantiation of function template specialization 'model_estimate_truncation_namespace::primarycensored_ode_variadic2_functor__::operator()<double, Eigen::Matrix<stan::math::var_value<double>, -1, 1>, std::vector<stan::math::var_value<double>>, std::vector<double>, std::vector<int>, nullptr>' requested here
  130 |         [&](auto&&... args) { return f_(t, y_vars, msgs_, args...); },
      |                                      ^
/data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/stepper/dense_output_runge_kutta.hpp:329:13: note: in instantiation of member function 'stan::math::coupled_ode_system_impl<false, model_estimate_truncation_namespace::primarycensored_ode_variadic2_functor__, stan::math::var_value<double>, const std::vector<stan::math::var_value<double>> &, const std::vector<double> &, const std::vector<int> &>::operator()' requested here
  329 |             sys( get_current_state() , get_current_deriv() , m_t );
      |             ^
/data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/integrate/check_adapter.hpp:153:26: note: in instantiation of function template specialization 'boost::numeric::odeint::dense_output_runge_kutta<boost::numeric::odeint::controlled_runge_kutta<boost::numeric::odeint::runge_kutta_dopri5<std::vector<double>>>>::do_step<std::reference_wrapper<stan::math::coupled_ode_system<model_estimate_truncation_namespace::primarycensored_ode_variadic2_functor__, stan::math::var_value<double>, const std::vector<stan::math::var_value<double>> &, const std::vector<double> &, const std::vector<int> &>>>' requested here
  153 |         return m_stepper.do_step(system);
      |                          ^
/data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/integrate/detail/integrate_times.hpp:159:16: note: in instantiation of function template specialization 'boost::numeric::odeint::checked_stepper<boost::numeric::odeint::dense_output_runge_kutta<boost::numeric::odeint::controlled_runge_kutta<boost::numeric::odeint::runge_kutta_dopri5<std::vector<double>>>>, boost::numeric::odeint::max_step_checker>::do_step<std::reference_wrapper<stan::math::coupled_ode_system<model_estimate_truncation_namespace::primarycensored_ode_variadic2_functor__, stan::math::var_value<double>, const std::vector<stan::math::var_value<double>> &, const std::vector<double> &, const std::vector<int> &>>>' requested here
  159 |             st.do_step( system );
      |                ^
/data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/integrate/integrate_times.hpp:51:20: note: (skipping 12 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
   51 |     return detail::integrate_times(
      |                    ^
/data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/services/util/initialize.hpp:169:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad<true, true, model_estimate_truncation_namespace::model_estimate_truncation>' requested here
  169 |       log_prob = stan::model::log_prob_grad<true, Jacobian>(
      |                               ^
/data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_estimate_truncation_namespace::model_estimate_truncation, stan::io::var_context, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
   49 |   std::vector<double> cont_vector = util::initialize(
      |                                           ^
/data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_estimate_truncation_namespace::model_estimate_truncation>' requested here
  481 |     return_code = stan::services::diagnose::diagnose(model,
      |                                             ^
/data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_estimate_truncation_namespace::model_estimate_truncation, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
 1215 |     ret = command(args, model_, holder, names_oi_tidx_,
      |           ^
stanExports_estimate_truncation.cc:15:73: note: in instantiation of member function 'rstan::stan_fit<model_estimate_truncation_namespace::model_estimate_truncation, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
   15 |     .method("call_sampler", &rstan::stan_fit<stan_model, stan::rng_t> ::call_sampler)
      |                                                                         ^
30 warnings generated.


/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I"../inst/include" -I"/data/localhost/ripley/R/test-clang/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/rstan/include' -I'/data/localhost/ripley/R/test-clang/StanHeaders/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include   -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/data/localhost/ripley/R/test-clang/RcppParallel/include -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW   -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c stanExports_simulate_infections.cc -o stanExports_simulate_infections.o
In file included from stanExports_simulate_infections.cc:5:
In file included from ./stanExports_simulate_infections.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from stanExports_simulate_infections.cc:5:
In file included from ./stanExports_simulate_infections.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from stanExports_simulate_infections.cc:5:
In file included from ./stanExports_simulate_infections.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:21:
/data/localhost/ripley/R/test-clang/rstan/include/rstan/io/r_ostream.hpp:47:31: warning: 'rstan::io::r_cout_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual]
   47 |       virtual std::streamsize xsputn(const char_type* s, int n) {
      |                               ^
/usr/local/clang23/bin/../include/c++/v1/streambuf:381:22: note: hidden overloaded virtual function 'std::basic_streambuf<char>::xsputn' declared here: type mismatch at 2nd parameter ('streamsize' (aka 'long') vs 'int')
  381 |   virtual streamsize xsputn(const char_type* __s, streamsize __n) {
      |                      ^
In file included from stanExports_simulate_infections.cc:5:
In file included from ./stanExports_simulate_infections.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:21:
/data/localhost/ripley/R/test-clang/rstan/include/rstan/io/r_ostream.hpp:70:31: warning: 'rstan::io::r_cerr_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual]
   70 |       virtual std::streamsize xsputn(const char_type* s, int n) {
      |                               ^
/usr/local/clang23/bin/../include/c++/v1/streambuf:381:22: note: hidden overloaded virtual function 'std::basic_streambuf<char>::xsputn' declared here: type mismatch at 2nd parameter ('streamsize' (aka 'long') vs 'int')
  381 |   virtual streamsize xsputn(const char_type* __s, streamsize __n) {
      |                      ^
In file included from stanExports_simulate_infections.cc:5:
In file included from ./stanExports_simulate_infections.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
   72 |                         Index replacements = 0;
      |                               ^
In file included from stanExports_simulate_infections.cc:5:
In file included from ./stanExports_simulate_infections.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  246 |   int count = 0;
      |       ^
In file included from stanExports_simulate_infections.cc:5:
In file included from ./stanExports_simulate_infections.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/constraint.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/abs.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__exclude_from_explicit_instantiation__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
   29 | BOOST_MOVE_STD_NS_BEG
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
   21 |    #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
   74 | #  define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
   70 |     _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
      |                                        ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
   51 |   _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push(                                         \
      |   ^
<scratch space>:21:69: note: expanded from here
   21 |  clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
      |                                                                     ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
   61 | BOOST_MOVE_STD_NS_END
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
   22 |    #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
   75 | #  define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
   72 | #  define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
      |                                                   ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
   57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
      |                                                ^
<scratch space>:23:8: note: expanded from here
   23 |  clang attribute _LibcxxExplicitABIAnnotations.pop
      |        ^
In file included from stanExports_simulate_infections.cc:5:
In file included from ./stanExports_simulate_infections.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/constraint.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/abs.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__visibility__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
   29 | BOOST_MOVE_STD_NS_BEG
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
   21 |    #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
   74 | #  define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
   70 |     _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
      |                                        ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
   51 |   _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push(                                         \
      |   ^
<scratch space>:21:110: note: expanded from here
   21 |  clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
      |                                                                                                              ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
   61 | BOOST_MOVE_STD_NS_END
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
   22 |    #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
   75 | #  define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
   72 | #  define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
      |                                                   ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
   57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
      |                                                ^
<scratch space>:23:8: note: expanded from here
   23 |  clang attribute _LibcxxExplicitABIAnnotations.pop
      |        ^
In file included from stanExports_simulate_infections.cc:5:
In file included from ./stanExports_simulate_infections.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/constraint.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/abs.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__abi_tag__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
   29 | BOOST_MOVE_STD_NS_BEG
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
   21 |    #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
   74 | #  define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
   70 |     _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
      |                                        ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
   51 |   _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push(                                         \
      |   ^
<scratch space>:21:136: note: expanded from here
   21 |  clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
      |                                                                                                                                        ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
   61 | BOOST_MOVE_STD_NS_END
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
   22 |    #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
   75 | #  define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
   72 | #  define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
      |                                                   ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
   57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
      |                                                ^
<scratch space>:23:8: note: expanded from here
   23 |  clang attribute _LibcxxExplicitABIAnnotations.pop
      |        ^
In file included from stanExports_simulate_infections.cc:5:
In file included from ./stanExports_simulate_infections.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:34:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token]
  166 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_simulate_infections.cc:5:
In file included from ./stanExports_simulate_infections.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token]
  125 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_simulate_infections.cc:5:
In file included from ./stanExports_simulate_infections.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:131:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token]
   49 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_simulate_infections.cc:5:
In file included from ./stanExports_simulate_infections.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:39:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/linear_algebra.hpp:20:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token]
   75 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_simulate_infections.cc:5:
In file included from ./stanExports_simulate_infections.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:40:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/unscale.hpp:28:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token]
  139 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_simulate_infections.cc:5:
In file included from ./stanExports_simulate_infections.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token]
  120 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_simulate_infections.cc:5:
In file included from ./stanExports_simulate_infections.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:21:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token]
   99 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_simulate_infections.cc:5:
In file included from ./stanExports_simulate_infections.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token]
  495 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_simulate_infections.cc:5:
In file included from ./stanExports_simulate_infections.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:18:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob.hpp:290:
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/student_t_qf.hpp:74:32: warning: unused variable 'function' [-Wunused-variable]
   74 |   static constexpr const char* function = "student_t_qf";
      |                                ^~~~~~~~
In file included from stanExports_simulate_infections.cc:5:
In file included from ./stanExports_simulate_infections.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:49:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:16:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob.hpp:7:
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:52:20: warning: unused variable 'p_val_flip' [-Wunused-variable]
   52 |       const double p_val_flip = p_val < 0.5 ? p_val : 1.0 - p_val;
      |                    ^~~~~~~~~~
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:42:18: warning: unused variable 'sqrt_inv_ibeta_m1' [-Wunused-variable]
   42 |     const double sqrt_inv_ibeta_m1 = sqrt(inv(ibeta_arg) - 1.0);
      |                  ^~~~~~~~~~~~~~~~~
In file included from stanExports_simulate_infections.cc:5:
In file included from ./stanExports_simulate_infections.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:50:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/services/experimental/advi/fullrank.hpp:12:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/variational/advi.hpp:12:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/circular_buffer.hpp:57:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/circular_buffer/details.hpp:22:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/move/move.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/move/iterator.hpp:27:
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/iterator_traits.hpp:63:1: warning: unused attribute '__exclude_from_explicit_instantiation__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
   63 | BOOST_MOVE_STD_NS_BEG
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
   21 |    #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
   74 | #  define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
   70 |     _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
      |                                        ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
   51 |   _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push(                                         \
      |   ^
<scratch space>:9:69: note: expanded from here
    9 |  clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
      |                                                                     ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/iterator_traits.hpp:81:1: note: '#pragma clang attribute push' regions ends here
   81 | BOOST_MOVE_STD_NS_END
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
   22 |    #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
   75 | #  define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
   72 | #  define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
      |                                                   ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
   57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
      |                                                ^
<scratch space>:11:8: note: expanded from here
   11 |  clang attribute _LibcxxExplicitABIAnnotations.pop
      |        ^
In file included from stanExports_simulate_infections.cc:5:
In file included from ./stanExports_simulate_infections.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:50:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/services/experimental/advi/fullrank.hpp:12:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/variational/advi.hpp:12:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/circular_buffer.hpp:57:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/circular_buffer/details.hpp:22:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/move/move.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/move/iterator.hpp:27:
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/iterator_traits.hpp:63:1: warning: unused attribute '__visibility__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
   63 | BOOST_MOVE_STD_NS_BEG
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
   21 |    #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
   74 | #  define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
   70 |     _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
      |                                        ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
   51 |   _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push(                                         \
      |   ^
<scratch space>:9:110: note: expanded from here
    9 |  clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
      |                                                                                                              ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/iterator_traits.hpp:81:1: note: '#pragma clang attribute push' regions ends here
   81 | BOOST_MOVE_STD_NS_END
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
   22 |    #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
   75 | #  define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
   72 | #  define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
      |                                                   ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
   57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
      |                                                ^
<scratch space>:11:8: note: expanded from here
   11 |  clang attribute _LibcxxExplicitABIAnnotations.pop
      |        ^
In file included from stanExports_simulate_infections.cc:5:
In file included from ./stanExports_simulate_infections.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:50:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/services/experimental/advi/fullrank.hpp:12:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/variational/advi.hpp:12:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/circular_buffer.hpp:57:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/circular_buffer/details.hpp:22:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/move/move.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/move/iterator.hpp:27:
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/iterator_traits.hpp:63:1: warning: unused attribute '__abi_tag__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
   63 | BOOST_MOVE_STD_NS_BEG
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
   21 |    #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
   74 | #  define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
   70 |     _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
      |                                        ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
   51 |   _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push(                                         \
      |   ^
<scratch space>:9:136: note: expanded from here
    9 |  clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
      |                                                                                                                                        ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/iterator_traits.hpp:81:1: note: '#pragma clang attribute push' regions ends here
   81 | BOOST_MOVE_STD_NS_END
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
   22 |    #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
   75 | #  define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
   72 | #  define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
      |                                                   ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
   57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
      |                                                ^
<scratch space>:11:8: note: expanded from here
   11 |  clang attribute _LibcxxExplicitABIAnnotations.pop
      |        ^
In file included from stanExports_simulate_infections.cc:5:
In file included from ./stanExports_simulate_infections.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:54:
/data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/services/optimize/newton.hpp:98:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable]
   98 |   int ret = 0;
      |       ^
In file included from stanExports_simulate_infections.cc:5:
In file included from ./stanExports_simulate_infections.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
/data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1252:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable]
 1252 |     int ret = stan::services::error_codes::CONFIG;
      |         ^
In file included from stanExports_simulate_infections.cc:5:
In file included from ./stanExports_simulate_infections.h:25:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/model/model_header.hpp:13:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/model/indexing.hpp:13:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/model/indexing/rvalue_varmat.hpp:7:
/data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/model/indexing/rvalue.hpp:520:22: warning: unused variable 'rows' [-Wunused-variable]
  520 |   const Eigen::Index rows = row_idx.ns_.size();
      |                      ^~~~
/data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/model/indexing/rvalue.hpp:521:22: warning: unused variable 'cols' [-Wunused-variable]
  521 |   const Eigen::Index cols = col_idx.ns_.size();
      |                      ^~~~
In file included from stanExports_simulate_infections.cc:5:
./stanExports_simulate_infections.h:6675:9: warning: variable 'start' set but not used [-Wunused-but-set-variable]
 6675 |     int start = std::numeric_limits<int>::min();
      |         ^
./stanExports_simulate_infections.h:3009:15: warning: unused variable 'y' [-Wunused-variable]
 3009 |   const auto& y = stan::math::to_ref(y_arg__);
      |               ^
./stanExports_simulate_infections.h:2081:12: note: in instantiation of function template specialization 'model_simulate_infections_namespace::primarycensored_ode<double, Eigen::Matrix<double, -1, 1>, std::vector<double>, std::vector<double>, std::vector<int>, nullptr>' requested here
 2081 |     return primarycensored_ode(t, y, theta, x_r, x_i, pstream__);
      |            ^
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/coupled_ode_system.hpp:72:43: note: in instantiation of function template specialization 'model_simulate_infections_namespace::primarycensored_ode_variadic2_functor__::operator()<double, Eigen::Matrix<double, -1, 1>, std::vector<double>, std::vector<double>, std::vector<int>, nullptr>' requested here
   72 |         [&](const Args&... args) { return f_(t, y, msgs_, args...); },
      |                                           ^
/data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/stepper/dense_output_runge_kutta.hpp:329:13: note: in instantiation of member function 'stan::math::coupled_ode_system_impl<true, model_simulate_infections_namespace::primarycensored_ode_variadic2_functor__, double, const std::vector<double> &, const std::vector<double> &, const std::vector<int> &>::operator()' requested here
  329 |             sys( get_current_state() , get_current_deriv() , m_t );
      |             ^
/data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/integrate/check_adapter.hpp:153:26: note: in instantiation of function template specialization 'boost::numeric::odeint::dense_output_runge_kutta<boost::numeric::odeint::controlled_runge_kutta<boost::numeric::odeint::runge_kutta_dopri5<std::vector<double>>>>::do_step<std::reference_wrapper<stan::math::coupled_ode_system<model_simulate_infections_namespace::primarycensored_ode_variadic2_functor__, double, const std::vector<double> &, const std::vector<double> &, const std::vector<int> &>>>' requested here
  153 |         return m_stepper.do_step(system);
      |                          ^
/data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/integrate/detail/integrate_times.hpp:159:16: note: in instantiation of function template specialization 'boost::numeric::odeint::checked_stepper<boost::numeric::odeint::dense_output_runge_kutta<boost::numeric::odeint::controlled_runge_kutta<boost::numeric::odeint::runge_kutta_dopri5<std::vector<double>>>>, boost::numeric::odeint::max_step_checker>::do_step<std::reference_wrapper<stan::math::coupled_ode_system<model_simulate_infections_namespace::primarycensored_ode_variadic2_functor__, double, const std::vector<double> &, const std::vector<double> &, const std::vector<int> &>>>' requested here
  159 |             st.do_step( system );
      |                ^
/data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/integrate/integrate_times.hpp:51:20: note: (skipping 12 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
   51 |     return detail::integrate_times(
      |                    ^
/data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/services/util/initialize.hpp:94:36: note: in instantiation of function template specialization 'stan::io::random_var_context::random_var_context<model_simulate_infections_namespace::model_simulate_infections, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
   94 |       stan::io::random_var_context random_context(model, rng, init_radius,
      |                                    ^
/data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_simulate_infections_namespace::model_simulate_infections, stan::io::var_context, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
   49 |   std::vector<double> cont_vector = util::initialize(
      |                                           ^
/data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_simulate_infections_namespace::model_simulate_infections>' requested here
  481 |     return_code = stan::services::diagnose::diagnose(model,
      |                                             ^
/data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_simulate_infections_namespace::model_simulate_infections, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
 1215 |     ret = command(args, model_, holder, names_oi_tidx_,
      |           ^
stanExports_simulate_infections.cc:15:73: note: in instantiation of member function 'rstan::stan_fit<model_simulate_infections_namespace::model_simulate_infections, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
   15 |     .method("call_sampler", &rstan::stan_fit<stan_model, stan::rng_t> ::call_sampler)
      |                                                                         ^
30 warnings generated.


/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I"../inst/include" -I"/data/localhost/ripley/R/test-clang/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/rstan/include' -I'/data/localhost/ripley/R/test-clang/StanHeaders/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include   -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/data/localhost/ripley/R/test-clang/RcppParallel/include -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW   -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c stanExports_simulate_secondary.cc -o stanExports_simulate_secondary.o
In file included from stanExports_simulate_secondary.cc:5:
In file included from ./stanExports_simulate_secondary.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from stanExports_simulate_secondary.cc:5:
In file included from ./stanExports_simulate_secondary.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from stanExports_simulate_secondary.cc:5:
In file included from ./stanExports_simulate_secondary.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:21:
/data/localhost/ripley/R/test-clang/rstan/include/rstan/io/r_ostream.hpp:47:31: warning: 'rstan::io::r_cout_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual]
   47 |       virtual std::streamsize xsputn(const char_type* s, int n) {
      |                               ^
/usr/local/clang23/bin/../include/c++/v1/streambuf:381:22: note: hidden overloaded virtual function 'std::basic_streambuf<char>::xsputn' declared here: type mismatch at 2nd parameter ('streamsize' (aka 'long') vs 'int')
  381 |   virtual streamsize xsputn(const char_type* __s, streamsize __n) {
      |                      ^
In file included from stanExports_simulate_secondary.cc:5:
In file included from ./stanExports_simulate_secondary.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:21:
/data/localhost/ripley/R/test-clang/rstan/include/rstan/io/r_ostream.hpp:70:31: warning: 'rstan::io::r_cerr_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual]
   70 |       virtual std::streamsize xsputn(const char_type* s, int n) {
      |                               ^
/usr/local/clang23/bin/../include/c++/v1/streambuf:381:22: note: hidden overloaded virtual function 'std::basic_streambuf<char>::xsputn' declared here: type mismatch at 2nd parameter ('streamsize' (aka 'long') vs 'int')
  381 |   virtual streamsize xsputn(const char_type* __s, streamsize __n) {
      |                      ^
In file included from stanExports_simulate_secondary.cc:5:
In file included from ./stanExports_simulate_secondary.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
   72 |                         Index replacements = 0;
      |                               ^
In file included from stanExports_simulate_secondary.cc:5:
In file included from ./stanExports_simulate_secondary.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  246 |   int count = 0;
      |       ^
In file included from stanExports_simulate_secondary.cc:5:
In file included from ./stanExports_simulate_secondary.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/constraint.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/abs.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__exclude_from_explicit_instantiation__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
   29 | BOOST_MOVE_STD_NS_BEG
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
   21 |    #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
   74 | #  define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
   70 |     _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
      |                                        ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
   51 |   _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push(                                         \
      |   ^
<scratch space>:21:69: note: expanded from here
   21 |  clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
      |                                                                     ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
   61 | BOOST_MOVE_STD_NS_END
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
   22 |    #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
   75 | #  define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
   72 | #  define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
      |                                                   ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
   57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
      |                                                ^
<scratch space>:23:8: note: expanded from here
   23 |  clang attribute _LibcxxExplicitABIAnnotations.pop
      |        ^
In file included from stanExports_simulate_secondary.cc:5:
In file included from ./stanExports_simulate_secondary.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/constraint.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/abs.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__visibility__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
   29 | BOOST_MOVE_STD_NS_BEG
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
   21 |    #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
   74 | #  define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
   70 |     _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
      |                                        ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
   51 |   _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push(                                         \
      |   ^
<scratch space>:21:110: note: expanded from here
   21 |  clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
      |                                                                                                              ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
   61 | BOOST_MOVE_STD_NS_END
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
   22 |    #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
   75 | #  define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
   72 | #  define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
      |                                                   ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
   57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
      |                                                ^
<scratch space>:23:8: note: expanded from here
   23 |  clang attribute _LibcxxExplicitABIAnnotations.pop
      |        ^
In file included from stanExports_simulate_secondary.cc:5:
In file included from ./stanExports_simulate_secondary.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/constraint.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/abs.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__abi_tag__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
   29 | BOOST_MOVE_STD_NS_BEG
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
   21 |    #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
   74 | #  define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
   70 |     _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
      |                                        ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
   51 |   _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push(                                         \
      |   ^
<scratch space>:21:136: note: expanded from here
   21 |  clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
      |                                                                                                                                        ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
   61 | BOOST_MOVE_STD_NS_END
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
   22 |    #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
   75 | #  define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
   72 | #  define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
      |                                                   ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
   57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
      |                                                ^
<scratch space>:23:8: note: expanded from here
   23 |  clang attribute _LibcxxExplicitABIAnnotations.pop
      |        ^
In file included from stanExports_simulate_secondary.cc:5:
In file included from ./stanExports_simulate_secondary.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:34:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token]
  166 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_simulate_secondary.cc:5:
In file included from ./stanExports_simulate_secondary.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token]
  125 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_simulate_secondary.cc:5:
In file included from ./stanExports_simulate_secondary.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:131:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token]
   49 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_simulate_secondary.cc:5:
In file included from ./stanExports_simulate_secondary.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:39:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/linear_algebra.hpp:20:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token]
   75 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_simulate_secondary.cc:5:
In file included from ./stanExports_simulate_secondary.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:40:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/unscale.hpp:28:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token]
  139 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_simulate_secondary.cc:5:
In file included from ./stanExports_simulate_secondary.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token]
  120 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_simulate_secondary.cc:5:
In file included from ./stanExports_simulate_secondary.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:21:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token]
   99 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_simulate_secondary.cc:5:
In file included from ./stanExports_simulate_secondary.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token]
  495 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_simulate_secondary.cc:5:
In file included from ./stanExports_simulate_secondary.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:18:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob.hpp:290:
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/student_t_qf.hpp:74:32: warning: unused variable 'function' [-Wunused-variable]
   74 |   static constexpr const char* function = "student_t_qf";
      |                                ^~~~~~~~
In file included from stanExports_simulate_secondary.cc:5:
In file included from ./stanExports_simulate_secondary.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:49:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:16:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob.hpp:7:
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:52:20: warning: unused variable 'p_val_flip' [-Wunused-variable]
   52 |       const double p_val_flip = p_val < 0.5 ? p_val : 1.0 - p_val;
      |                    ^~~~~~~~~~
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:42:18: warning: unused variable 'sqrt_inv_ibeta_m1' [-Wunused-variable]
   42 |     const double sqrt_inv_ibeta_m1 = sqrt(inv(ibeta_arg) - 1.0);
      |                  ^~~~~~~~~~~~~~~~~
In file included from stanExports_simulate_secondary.cc:5:
In file included from ./stanExports_simulate_secondary.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:50:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/services/experimental/advi/fullrank.hpp:12:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/variational/advi.hpp:12:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/circular_buffer.hpp:57:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/circular_buffer/details.hpp:22:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/move/move.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/move/iterator.hpp:27:
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/iterator_traits.hpp:63:1: warning: unused attribute '__exclude_from_explicit_instantiation__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
   63 | BOOST_MOVE_STD_NS_BEG
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
   21 |    #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
   74 | #  define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
   70 |     _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
      |                                        ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
   51 |   _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push(                                         \
      |   ^
<scratch space>:9:69: note: expanded from here
    9 |  clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
      |                                                                     ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/iterator_traits.hpp:81:1: note: '#pragma clang attribute push' regions ends here
   81 | BOOST_MOVE_STD_NS_END
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
   22 |    #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
   75 | #  define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
   72 | #  define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
      |                                                   ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
   57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
      |                                                ^
<scratch space>:11:8: note: expanded from here
   11 |  clang attribute _LibcxxExplicitABIAnnotations.pop
      |        ^
In file included from stanExports_simulate_secondary.cc:5:
In file included from ./stanExports_simulate_secondary.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:50:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/services/experimental/advi/fullrank.hpp:12:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/variational/advi.hpp:12:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/circular_buffer.hpp:57:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/circular_buffer/details.hpp:22:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/move/move.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/move/iterator.hpp:27:
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/iterator_traits.hpp:63:1: warning: unused attribute '__visibility__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
   63 | BOOST_MOVE_STD_NS_BEG
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
   21 |    #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
   74 | #  define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
   70 |     _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
      |                                        ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
   51 |   _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push(                                         \
      |   ^
<scratch space>:9:110: note: expanded from here
    9 |  clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
      |                                                                                                              ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/iterator_traits.hpp:81:1: note: '#pragma clang attribute push' regions ends here
   81 | BOOST_MOVE_STD_NS_END
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
   22 |    #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
   75 | #  define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
   72 | #  define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
      |                                                   ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
   57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
      |                                                ^
<scratch space>:11:8: note: expanded from here
   11 |  clang attribute _LibcxxExplicitABIAnnotations.pop
      |        ^
In file included from stanExports_simulate_secondary.cc:5:
In file included from ./stanExports_simulate_secondary.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:50:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/services/experimental/advi/fullrank.hpp:12:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/variational/advi.hpp:12:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/circular_buffer.hpp:57:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/circular_buffer/details.hpp:22:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/move/move.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/move/iterator.hpp:27:
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/iterator_traits.hpp:63:1: warning: unused attribute '__abi_tag__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
   63 | BOOST_MOVE_STD_NS_BEG
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
   21 |    #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
   74 | #  define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
   70 |     _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
      |                                        ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
   51 |   _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push(                                         \
      |   ^
<scratch space>:9:136: note: expanded from here
    9 |  clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
      |                                                                                                                                        ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/iterator_traits.hpp:81:1: note: '#pragma clang attribute push' regions ends here
   81 | BOOST_MOVE_STD_NS_END
      | ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
   22 |    #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
      |                                  ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
   75 | #  define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
      |                                       ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
   72 | #  define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
      |                                                   ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
   57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
      |                                                ^
<scratch space>:11:8: note: expanded from here
   11 |  clang attribute _LibcxxExplicitABIAnnotations.pop
      |        ^
In file included from stanExports_simulate_secondary.cc:5:
In file included from ./stanExports_simulate_secondary.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:54:
/data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/services/optimize/newton.hpp:98:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable]
   98 |   int ret = 0;
      |       ^
In file included from stanExports_simulate_secondary.cc:5:
In file included from ./stanExports_simulate_secondary.h:23:
In file included from /data/localhost/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
/data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1252:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable]
 1252 |     int ret = stan::services::error_codes::CONFIG;
      |         ^
In file included from stanExports_simulate_secondary.cc:5:
In file included from ./stanExports_simulate_secondary.h:25:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/model/model_header.hpp:13:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/model/indexing.hpp:13:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/model/indexing/rvalue_varmat.hpp:7:
/data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/model/indexing/rvalue.hpp:520:22: warning: unused variable 'rows' [-Wunused-variable]
  520 |   const Eigen::Index rows = row_idx.ns_.size();
      |                      ^~~~
/data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/model/indexing/rvalue.hpp:521:22: warning: unused variable 'cols' [-Wunused-variable]
  521 |   const Eigen::Index cols = col_idx.ns_.size();
      |                      ^~~~
In file included from stanExports_simulate_secondary.cc:5:
./stanExports_simulate_secondary.h:2472:15: warning: unused variable 'y' [-Wunused-variable]
 2472 |   const auto& y = stan::math::to_ref(y_arg__);
      |               ^
./stanExports_simulate_secondary.h:1544:12: note: in instantiation of function template specialization 'model_simulate_secondary_namespace::primarycensored_ode<double, Eigen::Matrix<double, -1, 1>, std::vector<double>, std::vector<double>, std::vector<int>, nullptr>' requested here
 1544 |     return primarycensored_ode(t, y, theta, x_r, x_i, pstream__);
      |            ^
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/coupled_ode_system.hpp:72:43: note: in instantiation of function template specialization 'model_simulate_secondary_namespace::primarycensored_ode_variadic2_functor__::operator()<double, Eigen::Matrix<double, -1, 1>, std::vector<double>, std::vector<double>, std::vector<int>, nullptr>' requested here
   72 |         [&](const Args&... args) { return f_(t, y, msgs_, args...); },
      |                                           ^
/data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/stepper/dense_output_runge_kutta.hpp:329:13: note: in instantiation of member function 'stan::math::coupled_ode_system_impl<true, model_simulate_secondary_namespace::primarycensored_ode_variadic2_functor__, double, const std::vector<double> &, const std::vector<double> &, const std::vector<int> &>::operator()' requested here
  329 |             sys( get_current_state() , get_current_deriv() , m_t );
      |             ^
/data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/integrate/check_adapter.hpp:153:26: note: in instantiation of function template specialization 'boost::numeric::odeint::dense_output_runge_kutta<boost::numeric::odeint::controlled_runge_kutta<boost::numeric::odeint::runge_kutta_dopri5<std::vector<double>>>>::do_step<std::reference_wrapper<stan::math::coupled_ode_system<model_simulate_secondary_namespace::primarycensored_ode_variadic2_functor__, double, const std::vector<double> &, const std::vector<double> &, const std::vector<int> &>>>' requested here
  153 |         return m_stepper.do_step(system);
      |                          ^
/data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/integrate/detail/integrate_times.hpp:159:16: note: in instantiation of function template specialization 'boost::numeric::odeint::checked_stepper<boost::numeric::odeint::dense_output_runge_kutta<boost::numeric::odeint::controlled_runge_kutta<boost::numeric::odeint::runge_kutta_dopri5<std::vector<double>>>>, boost::numeric::odeint::max_step_checker>::do_step<std::reference_wrapper<stan::math::coupled_ode_system<model_simulate_secondary_namespace::primarycensored_ode_variadic2_functor__, double, const std::vector<double> &, const std::vector<double> &, const std::vector<int> &>>>' requested here
  159 |             st.do_step( system );
      |                ^
/data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/integrate/integrate_times.hpp:51:20: note: (skipping 12 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
   51 |     return detail::integrate_times(
      |                    ^
/data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/services/util/initialize.hpp:94:36: note: in instantiation of function template specialization 'stan::io::random_var_context::random_var_context<model_simulate_secondary_namespace::model_simulate_secondary, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
   94 |       stan::io::random_var_context random_context(model, rng, init_radius,
      |                                    ^
/data/localhost/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_simulate_secondary_namespace::model_simulate_secondary, stan::io::var_context, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
   49 |   std::vector<double> cont_vector = util::initialize(
      |                                           ^
/data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_simulate_secondary_namespace::model_simulate_secondary>' requested here
  481 |     return_code = stan::services::diagnose::diagnose(model,
      |                                             ^
/data/localhost/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_simulate_secondary_namespace::model_simulate_secondary, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
 1215 |     ret = command(args, model_, holder, names_oi_tidx_,
      |           ^
stanExports_simulate_secondary.cc:15:73: note: in instantiation of member function 'rstan::stan_fit<model_simulate_secondary_namespace::model_simulate_secondary, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
   15 |     .method("call_sampler", &rstan::stan_fit<stan_model, stan::rng_t> ::call_sampler)
      |                                                                         ^
29 warnings generated.
/usr/local/clang23/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang23/lib -L/usr/local/clang23/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -o EpiNow2.so RcppExports.o stanExports_dist_fit.o stanExports_estimate_dist.o stanExports_estimate_infections.o stanExports_estimate_secondary.o stanExports_estimate_truncation.o stanExports_simulate_infections.o stanExports_simulate_secondary.o -L/data/localhost/ripley/R/test-clang/RcppParallel/lib/ -Wl,-rpath,/data/localhost/ripley/R/test-clang/RcppParallel/lib/ -ltbb -ltbbmalloc
make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-clang/EpiNow2/src'
make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-clang/EpiNow2/src'
make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-clang/EpiNow2/src'
installing to /data/localhost/ripley/R/packages/tests-clang/EpiNow2.Rcheck/00LOCK-EpiNow2/00new/EpiNow2/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (EpiNow2)