- using R Under development (unstable) (2025-11-13 r89017)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
clang version 21.1.5
flang version 21.1.5
- running under: Fedora Linux 42 (Workstation Edition)
- using session charset: UTF-8
- using option ‘--no-stop-on-test-error’
- checking for file ‘EDISON/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘EDISON’ version ‘1.1.1’
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘EDISON’ can be installed ... [8s/21s] OK
See the install log for details.
- checking installed package size ... OK
- checking package directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [20s/51s] OK
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking examples ... [14s/36s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [11s/23s] ERROR
Running ‘test-all.R’ [10s/22s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
> library(testthat)
> test_check("EDISON")
Loading required package: EDISON
Loading required package: corpcor
Loading required package: MASS
[1] "Initialisation successful."
[1] "Starting tvDBN iterations..."
5 % 10 % 15 % 20 % 25 % 30 % 35 % 40 % 45 % 50 % 55 % 60 % 65 % 70 % 75 % 80 % 85 % 90 % 95 % 100 % [1] ""
[1] "End of iterations"
[1] "Initialisation successful."
[1] "Starting tvDBN iterations..."
5 % 10 % 15 % 20 % 25 % 30 % 35 % 40 % 45 % 50 % 55 % 60 % 65 % 70 % 75 % 80 % 85 % 90 % 95 % 100 % [1] ""
[1] "End of iterations"
Saving _problems/test-structure-moves-329.R
Saving _problems/test-structure-moves-333.R
Saving _problems/test-structure-moves-337.R
[ FAIL 3 | WARN 0 | SKIP 0 | PASS 17 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-structure-moves.r:328:1'): network info the same before and after ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(updateCorrectly(), is_true())
── Error ('test-structure-moves.r:332:1'): rejected moves make no change ───────
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(noChangeOnReject(), is_true())
── Error ('test-structure-moves.r:336:1'): output not null ─────────────────────
Error in `is_false()`: could not find function "is_false"
Backtrace:
▆
1. └─testthat::expect_that(...)
[ FAIL 3 | WARN 0 | SKIP 0 | PASS 17 ]
Error:
! Test failures.
Execution halted
- checking PDF version of manual ... [10s/26s] OK
- checking HTML version of manual ... [9s/27s] OK
- checking for non-standard things in the check directory ... OK
- checking for detritus in the temp directory ... OK
- DONE
Status: 1 ERROR