• using R Under development (unstable) (2025-09-11 r88813)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     clang version 21.1.1     flang version 21.1.1
• running under: Fedora Linux 42 (Workstation Edition)
• using session charset: UTF-8
• using option ‘--no-stop-on-test-error’
• checking for file ‘DAISIEprep/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘DAISIEprep’ version ‘1.0.0’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘DAISIEprep’ can be installed ... [11s/15s] OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [18s/24s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [19s/26s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [185s/230s] ERROR   Running ‘testthat.R’ [185s/229s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > library(testthat)   > library(DAISIEprep)   >   > test_check("DAISIEprep")   [ FAIL 4 | WARN 2 | SKIP 14 | PASS 2235 ]      ══ Skipped tests (14) ══════════════════════════════════════════════════════════   • Run only on CI (3): 'test-sensitivity.R:2:3', 'test-sensitivity.R:40:3',     'test-sensitivity.R:78:3'   • empty test (11): 'test-create_daisie_data.R:169:1',     'test-create_daisie_data.R:173:1', 'test-create_daisie_data.R:177:1',     'test-create_daisie_data.R:181:1', 'test-create_daisie_data.R:185:1',     'test-create_daisie_data.R:189:1', 'test-create_daisie_data.R:231:1',     'test-create_daisie_data.R:235:1', 'test-create_daisie_data.R:239:1',     'test-create_daisie_data.R:243:1', 'test-create_daisie_data.R:247:1'      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Failure ('test-plot_phylod.R:3:3'): plot_phylod runs silent without error ───   `plot_phylod(phylod = phylod, node_pies = FALSE)` produced warnings.   ── Failure ('test-plot_phylod.R:8:3'): plot_phylod runs silent without error ───   `plot_phylod(phylod = phylod, node_pies = FALSE)` produced warnings.   ── Failure ('test-plot_phylod.R:13:3'): plot_phylod runs silent without error ──   `plot_phylod(phylod = phylod, node_pies = TRUE)` produced warnings.   ── Failure ('test-plot_phylod.R:18:3'): plot_phylod runs silent without error ──   `plot_phylod(phylod = phylod, node_pies = TRUE)` produced warnings.      [ FAIL 4 | WARN 2 | SKIP 14 | PASS 2235 ]   Error: Test failures   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [114s/143s] OK
• checking PDF version of manual ... [14s/17s] OK
• checking HTML version of manual ... OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 1 ERROR