* using log directory ‘/data/localhost/ripley/R/packages/tests-clang/CohortUtilisation.Rcheck’
* using R Under development (unstable) (2026-09-15 r90540)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    clang version 23.1.1
    flang version 23.1.1
* running under: Fedora Linux 44 (Server Edition)
* using session charset: UTF-8
* current time: 2026-09-16 05:23:37 UTC
* using option ‘--no-stop-on-test-error’
* checking for file ‘CohortUtilisation/DESCRIPTION’ ... OK
* this is package ‘CohortUtilisation’ version ‘0.6.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... INFO
Package suggested but not available for checking: 'duckdb'
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘CohortUtilisation’ can be installed ... [6s/18s] OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-clang/CohortUtilisation-00install.html' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [9s/22s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... NONE
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... ERROR
  Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(CohortUtilisation)
  > 
  > test_check("CohortUtilisation")
  
  Attaching package: 'omopgenerics'
  
  The following object is masked from 'package:stats':
  
      filter
  
  
  Attaching package: 'dplyr'
  
  The following objects are masked from 'package:stats':
  
      filter, lag
  
  The following objects are masked from 'package:base':
  
      intersect, setdiff, setequal, union
  
  
  Attaching package: 'dbplyr'
  
  The following objects are masked from 'package:dplyr':
  
      ident, sql, sql_escape_ident, sql_escape_string
  
  Saving _problems/test-add-emergency-2.R
  Saving _problems/test-add-emergency-12.R
  Saving _problems/test-add-emergency-43.R
  Saving _problems/test-add-emergency-73.R
  Saving _problems/test-add-emergency-92.R
  Saving _problems/test-add-inpatients-2.R
  Saving _problems/test-add-inpatients-13.R
  Saving _problems/test-add-inpatients-43.R
  Saving _problems/test-add-inpatients-66.R
  Saving _problems/test-add-inpatients-100.R
  Saving _problems/test-add-inpatients-119.R
  Saving _problems/test-add-outpatient-2.R
  Saving _problems/test-add-outpatient-12.R
  Saving _problems/test-add-outpatient-39.R
  Saving _problems/test-add-outpatient-72.R
  Saving _problems/test-add-prescriptions-2.R
  Saving _problems/test-add-prescriptions-31.R
  Saving _problems/test-add-procedures-2.R
  Saving _problems/test-add-procedures-27.R
  Saving _problems/test-add-visits-2.R
  Saving _problems/test-add-visits-13.R
  Saving _problems/test-add-visits-58.R
  Saving _problems/test-add-visits-76.R
  Saving _problems/test-add-visits-108.R
  Saving _problems/test-compute-episodes-2.R
  Saving _problems/test-compute-episodes-28.R
  Saving _problems/test-hospitalizations-2.R
  Saving _problems/test-summarise-utilization-2.R
  Saving _problems/test-summarise-utilization-30.R
  [ FAIL 29 | WARN 0 | SKIP 0 | PASS 0 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-add-emergency.R:2:3'): addEmergencyCare validates input arguments correctly ──
  Error in `(function (cond)  .Internal(C_tryCatchHelper(addr, 1L, cond)))(structure(list(message = "there is no package called 'duckdb'", call = loadNamespace(x), package = "duckdb", lib.loc = NULL), class = c("packageNotFoundError", "error", "condition")))`: error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': there is no package called 'duckdb'
  Backtrace:
      ▆
   1. ├─CohortUtilisation:::hermesTestCdm() at test-add-emergency.R:2:3
   2. │ └─DBI::dbConnect(duckdb::duckdb(), ":memory:") at ./helper-eunomia.R:8:3
   3. ├─base::loadNamespace(x)
   4. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
   5. │ │ └─base (local) withOneRestart(expr, restarts[[1L]])
   6. │ │   └─base (local) doWithOneRestart(return(expr), restart)
   7. │ └─base::stop(cond)
   8. └─base (local) `<fn>`(`<pckgNtFE>`)
  ── Error ('test-add-emergency.R:12:3'): addEmergencyCare detects emergency encounters via visit concept IDs and provider specialties ──
  Error in `(function (cond)  .Internal(C_tryCatchHelper(addr, 1L, cond)))(structure(list(message = "there is no package called 'duckdb'", call = loadNamespace(x), package = "duckdb", lib.loc = NULL), class = c("packageNotFoundError", "error", "condition")))`: error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': there is no package called 'duckdb'
  Backtrace:
      ▆
   1. ├─CohortUtilisation:::hermesTestCdm() at test-add-emergency.R:12:3
   2. │ └─DBI::dbConnect(duckdb::duckdb(), ":memory:") at ./helper-eunomia.R:8:3
   3. ├─base::loadNamespace(x) at ./helper-eunomia.R:8:3
   4. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
   5. │ │ └─base (local) withOneRestart(expr, restarts[[1L]])
   6. │ │   └─base (local) doWithOneRestart(return(expr), restart)
   7. │ └─base::stop(cond)
   8. └─base (local) `<fn>`(`<pckgNtFE>`)
  ── Error ('test-add-emergency.R:43:3'): addEmergencyCare stratifies by granular specialty ──
  Error in `(function (cond)  .Internal(C_tryCatchHelper(addr, 1L, cond)))(structure(list(message = "there is no package called 'duckdb'", call = loadNamespace(x), package = "duckdb", lib.loc = NULL), class = c("packageNotFoundError", "error", "condition")))`: error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': there is no package called 'duckdb'
  Backtrace:
      ▆
   1. ├─CohortUtilisation:::hermesTestCdm() at test-add-emergency.R:43:3
   2. │ └─DBI::dbConnect(duckdb::duckdb(), ":memory:") at ./helper-eunomia.R:8:3
   3. ├─base::loadNamespace(x) at ./helper-eunomia.R:8:3
   4. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
   5. │ │ └─base (local) withOneRestart(expr, restarts[[1L]])
   6. │ │   └─base (local) doWithOneRestart(return(expr), restart)
   7. │ └─base::stop(cond)
   8. └─base (local) `<fn>`(`<pckgNtFE>`)
  ── Error ('test-add-emergency.R:73:3'): addEmergency and addEmergencyVisits aliases work identically ──
  Error in `(function (cond)  .Internal(C_tryCatchHelper(addr, 1L, cond)))(structure(list(message = "there is no package called 'duckdb'", call = loadNamespace(x), package = "duckdb", lib.loc = NULL), class = c("packageNotFoundError", "error", "condition")))`: error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': there is no package called 'duckdb'
  Backtrace:
      ▆
   1. ├─CohortUtilisation:::hermesTestCdm() at test-add-emergency.R:73:3
   2. │ └─DBI::dbConnect(duckdb::duckdb(), ":memory:") at ./helper-eunomia.R:8:3
   3. ├─base::loadNamespace(x) at ./helper-eunomia.R:8:3
   4. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
   5. │ │ └─base (local) withOneRestart(expr, restarts[[1L]])
   6. │ │   └─base (local) doWithOneRestart(return(expr), restart)
   7. │ └─base::stop(cond)
   8. └─base (local) `<fn>`(`<pckgNtFE>`)
  ── Error ('test-add-emergency.R:92:3'): addEmergencyCare supports infinite and NA windows ──
  Error in `(function (cond)  .Internal(C_tryCatchHelper(addr, 1L, cond)))(structure(list(message = "there is no package called 'duckdb'", call = loadNamespace(x), package = "duckdb", lib.loc = NULL), class = c("packageNotFoundError", "error", "condition")))`: error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': there is no package called 'duckdb'
  Backtrace:
      ▆
   1. ├─CohortUtilisation:::hermesTestCdm() at test-add-emergency.R:92:3
   2. │ └─DBI::dbConnect(duckdb::duckdb(), ":memory:") at ./helper-eunomia.R:8:3
   3. ├─base::loadNamespace(x) at ./helper-eunomia.R:8:3
   4. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
   5. │ │ └─base (local) withOneRestart(expr, restarts[[1L]])
   6. │ │   └─base (local) doWithOneRestart(return(expr), restart)
   7. │ └─base::stop(cond)
   8. └─base (local) `<fn>`(`<pckgNtFE>`)
  ── Error ('test-add-inpatients.R:2:3'): addInpatients validates input arguments correctly ──
  Error in `(function (cond)  .Internal(C_tryCatchHelper(addr, 1L, cond)))(structure(list(message = "there is no package called 'duckdb'", call = loadNamespace(x), package = "duckdb", lib.loc = NULL), class = c("packageNotFoundError", "error", "condition")))`: error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': there is no package called 'duckdb'
  Backtrace:
      ▆
   1. ├─CohortUtilisation:::hermesTestCdm() at test-add-inpatients.R:2:3
   2. │ └─DBI::dbConnect(duckdb::duckdb(), ":memory:") at ./helper-eunomia.R:8:3
   3. ├─base::loadNamespace(x) at ./helper-eunomia.R:8:3
   4. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
   5. │ │ └─base (local) withOneRestart(expr, restarts[[1L]])
   6. │ │   └─base (local) doWithOneRestart(return(expr), restart)
   7. │ └─base::stop(cond)
   8. └─base (local) `<fn>`(`<pckgNtFE>`)
  ── Error ('test-add-inpatients.R:13:3'): addInpatients computes admissions, LOS, ICU stays, and readmissions ──
  Error in `(function (cond)  .Internal(C_tryCatchHelper(addr, 1L, cond)))(structure(list(message = "there is no package called 'duckdb'", call = loadNamespace(x), package = "duckdb", lib.loc = NULL), class = c("packageNotFoundError", "error", "condition")))`: error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': there is no package called 'duckdb'
  Backtrace:
      ▆
   1. ├─CohortUtilisation:::hermesTestCdm() at test-add-inpatients.R:13:3
   2. │ └─DBI::dbConnect(duckdb::duckdb(), ":memory:") at ./helper-eunomia.R:8:3
   3. ├─base::loadNamespace(x) at ./helper-eunomia.R:8:3
   4. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
   5. │ │ └─base (local) withOneRestart(expr, restarts[[1L]])
   6. │ │   └─base (local) doWithOneRestart(return(expr), restart)
   7. │ └─base::stop(cond)
   8. └─base (local) `<fn>`(`<pckgNtFE>`)
  ── Error ('test-add-inpatients.R:43:3'): addInpatients detects ICU stays via provider icuSpecialtyConceptIds ──
  Error in `(function (cond)  .Internal(C_tryCatchHelper(addr, 1L, cond)))(structure(list(message = "there is no package called 'duckdb'", call = loadNamespace(x), package = "duckdb", lib.loc = NULL), class = c("packageNotFoundError", "error", "condition")))`: error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': there is no package called 'duckdb'
  Backtrace:
      ▆
   1. ├─CohortUtilisation:::hermesTestCdm() at test-add-inpatients.R:43:3
   2. │ └─DBI::dbConnect(duckdb::duckdb(), ":memory:") at ./helper-eunomia.R:8:3
   3. ├─base::loadNamespace(x) at ./helper-eunomia.R:8:3
   4. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
   5. │ │ └─base (local) withOneRestart(expr, restarts[[1L]])
   6. │ │   └─base (local) doWithOneRestart(return(expr), restart)
   7. │ └─base::stop(cond)
   8. └─base (local) `<fn>`(`<pckgNtFE>`)
  ── Error ('test-add-inpatients.R:66:3'): addInpatients computes granular specialty breakdowns ──
  Error in `(function (cond)  .Internal(C_tryCatchHelper(addr, 1L, cond)))(structure(list(message = "there is no package called 'duckdb'", call = loadNamespace(x), package = "duckdb", lib.loc = NULL), class = c("packageNotFoundError", "error", "condition")))`: error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': there is no package called 'duckdb'
  Backtrace:
      ▆
   1. ├─CohortUtilisation:::hermesTestCdm() at test-add-inpatients.R:66:3
   2. │ └─DBI::dbConnect(duckdb::duckdb(), ":memory:") at ./helper-eunomia.R:8:3
   3. ├─base::loadNamespace(x) at ./helper-eunomia.R:8:3
   4. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
   5. │ │ └─base (local) withOneRestart(expr, restarts[[1L]])
   6. │ │   └─base (local) doWithOneRestart(return(expr), restart)
   7. │ └─base::stop(cond)
   8. └─base (local) `<fn>`(`<pckgNtFE>`)
  ── Error ('test-add-inpatients.R:100:3'): addHospitalizations and addInpatient backward-compatibility aliases work identically ──
  Error in `(function (cond)  .Internal(C_tryCatchHelper(addr, 1L, cond)))(structure(list(message = "there is no package called 'duckdb'", call = loadNamespace(x), package = "duckdb", lib.loc = NULL), class = c("packageNotFoundError", "error", "condition")))`: error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': there is no package called 'duckdb'
  Backtrace:
      ▆
   1. ├─CohortUtilisation:::hermesTestCdm() at test-add-inpatients.R:100:3
   2. │ └─DBI::dbConnect(duckdb::duckdb(), ":memory:") at ./helper-eunomia.R:8:3
   3. ├─base::loadNamespace(x) at ./helper-eunomia.R:8:3
   4. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
   5. │ │ └─base (local) withOneRestart(expr, restarts[[1L]])
   6. │ │   └─base (local) doWithOneRestart(return(expr), restart)
   7. │ └─base::stop(cond)
   8. └─base (local) `<fn>`(`<pckgNtFE>`)
  ── Error ('test-add-inpatients.R:119:3'): addInpatients supports infinite and NA window bounds without case mismatch ──
  Error in `(function (cond)  .Internal(C_tryCatchHelper(addr, 1L, cond)))(structure(list(message = "there is no package called 'duckdb'", call = loadNamespace(x), package = "duckdb", lib.loc = NULL), class = c("packageNotFoundError", "error", "condition")))`: error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': there is no package called 'duckdb'
  Backtrace:
      ▆
   1. ├─CohortUtilisation:::hermesTestCdm() at test-add-inpatients.R:119:3
   2. │ └─DBI::dbConnect(duckdb::duckdb(), ":memory:") at ./helper-eunomia.R:8:3
   3. ├─base::loadNamespace(x) at ./helper-eunomia.R:8:3
   4. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
   5. │ │ └─base (local) withOneRestart(expr, restarts[[1L]])
   6. │ │   └─base (local) doWithOneRestart(return(expr), restart)
   7. │ └─base::stop(cond)
   8. └─base (local) `<fn>`(`<pckgNtFE>`)
  ── Error ('test-add-outpatient.R:2:3'): addOutpatientVisits validates input arguments ──
  Error in `(function (cond)  .Internal(C_tryCatchHelper(addr, 1L, cond)))(structure(list(message = "there is no package called 'duckdb'", call = loadNamespace(x), package = "duckdb", lib.loc = NULL), class = c("packageNotFoundError", "error", "condition")))`: error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': there is no package called 'duckdb'
  Backtrace:
      ▆
   1. ├─CohortUtilisation:::hermes_test_cdm() at test-add-outpatient.R:2:3
   2. │ └─DBI::dbConnect(duckdb::duckdb(), ":memory:") at ./helper-eunomia.R:8:3
   3. ├─base::loadNamespace(x) at ./helper-eunomia.R:8:3
   4. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
   5. │ │ └─base (local) withOneRestart(expr, restarts[[1L]])
   6. │ │   └─base (local) doWithOneRestart(return(expr), restart)
   7. │ └─base::stop(cond)
   8. └─base (local) `<fn>`(`<pckgNtFE>`)
  ── Error ('test-add-outpatient.R:12:3'): addOutpatientVisits stratifies GP, Specialist, and Emergency visits ──
  Error in `(function (cond)  .Internal(C_tryCatchHelper(addr, 1L, cond)))(structure(list(message = "there is no package called 'duckdb'", call = loadNamespace(x), package = "duckdb", lib.loc = NULL), class = c("packageNotFoundError", "error", "condition")))`: error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': there is no package called 'duckdb'
  Backtrace:
      ▆
   1. ├─CohortUtilisation:::hermes_test_cdm() at test-add-outpatient.R:12:3
   2. │ └─DBI::dbConnect(duckdb::duckdb(), ":memory:") at ./helper-eunomia.R:8:3
   3. ├─base::loadNamespace(x) at ./helper-eunomia.R:8:3
   4. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
   5. │ │ └─base (local) withOneRestart(expr, restarts[[1L]])
   6. │ │   └─base (local) doWithOneRestart(return(expr), restart)
   7. │ └─base::stop(cond)
   8. └─base (local) `<fn>`(`<pckgNtFE>`)
  ── Error ('test-add-outpatient.R:39:3'): addOutpatientVisits computes granular specialty breakdowns ──
  Error in `(function (cond)  .Internal(C_tryCatchHelper(addr, 1L, cond)))(structure(list(message = "there is no package called 'duckdb'", call = loadNamespace(x), package = "duckdb", lib.loc = NULL), class = c("packageNotFoundError", "error", "condition")))`: error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': there is no package called 'duckdb'
  Backtrace:
      ▆
   1. ├─CohortUtilisation:::hermes_test_cdm() at test-add-outpatient.R:39:3
   2. │ └─DBI::dbConnect(duckdb::duckdb(), ":memory:") at ./helper-eunomia.R:8:3
   3. ├─base::loadNamespace(x) at ./helper-eunomia.R:8:3
   4. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
   5. │ │ └─base (local) withOneRestart(expr, restarts[[1L]])
   6. │ │   └─base (local) doWithOneRestart(return(expr), restart)
   7. │ └─base::stop(cond)
   8. └─base (local) `<fn>`(`<pckgNtFE>`)
  ── Error ('test-add-outpatient.R:72:3'): addOutpatientVisits supports infinite and NA window bounds ──
  Error in `(function (cond)  .Internal(C_tryCatchHelper(addr, 1L, cond)))(structure(list(message = "there is no package called 'duckdb'", call = loadNamespace(x), package = "duckdb", lib.loc = NULL), class = c("packageNotFoundError", "error", "condition")))`: error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': there is no package called 'duckdb'
  Backtrace:
      ▆
   1. ├─CohortUtilisation:::hermesTestCdm() at test-add-outpatient.R:72:3
   2. │ └─DBI::dbConnect(duckdb::duckdb(), ":memory:") at ./helper-eunomia.R:8:3
   3. ├─base::loadNamespace(x) at ./helper-eunomia.R:8:3
   4. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
   5. │ │ └─base (local) withOneRestart(expr, restarts[[1L]])
   6. │ │   └─base (local) doWithOneRestart(return(expr), restart)
   7. │ └─base::stop(cond)
   8. └─base (local) `<fn>`(`<pckgNtFE>`)
  ── Error ('test-add-prescriptions.R:2:3'): addPrescriptions extracts fills, days supply, PDC, and infusions ──
  Error in `(function (cond)  .Internal(C_tryCatchHelper(addr, 1L, cond)))(structure(list(message = "there is no package called 'duckdb'", call = loadNamespace(x), package = "duckdb", lib.loc = NULL), class = c("packageNotFoundError", "error", "condition")))`: error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': there is no package called 'duckdb'
  Backtrace:
      ▆
   1. ├─CohortUtilisation:::hermes_test_cdm() at test-add-prescriptions.R:2:3
   2. │ └─DBI::dbConnect(duckdb::duckdb(), ":memory:") at ./helper-eunomia.R:8:3
   3. ├─base::loadNamespace(x) at ./helper-eunomia.R:8:3
   4. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
   5. │ │ └─base (local) withOneRestart(expr, restarts[[1L]])
   6. │ │   └─base (local) doWithOneRestart(return(expr), restart)
   7. │ └─base::stop(cond)
   8. └─base (local) `<fn>`(`<pckgNtFE>`)
  ── Error ('test-add-prescriptions.R:31:3'): addPrescriptions supports infinite and NA window bounds ──
  Error in `(function (cond)  .Internal(C_tryCatchHelper(addr, 1L, cond)))(structure(list(message = "there is no package called 'duckdb'", call = loadNamespace(x), package = "duckdb", lib.loc = NULL), class = c("packageNotFoundError", "error", "condition")))`: error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': there is no package called 'duckdb'
  Backtrace:
      ▆
   1. ├─CohortUtilisation:::hermesTestCdm() at test-add-prescriptions.R:31:3
   2. │ └─DBI::dbConnect(duckdb::duckdb(), ":memory:") at ./helper-eunomia.R:8:3
   3. ├─base::loadNamespace(x) at ./helper-eunomia.R:8:3
   4. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
   5. │ │ └─base (local) withOneRestart(expr, restarts[[1L]])
   6. │ │   └─base (local) doWithOneRestart(return(expr), restart)
   7. │ └─base::stop(cond)
   8. └─base (local) `<fn>`(`<pckgNtFE>`)
  ── Error ('test-add-procedures.R:2:3'): addProcedures extracts labs, imaging, and procedure occurrences ──
  Error in `(function (cond)  .Internal(C_tryCatchHelper(addr, 1L, cond)))(structure(list(message = "there is no package called 'duckdb'", call = loadNamespace(x), package = "duckdb", lib.loc = NULL), class = c("packageNotFoundError", "error", "condition")))`: error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': there is no package called 'duckdb'
  Backtrace:
      ▆
   1. ├─CohortUtilisation:::hermes_test_cdm() at test-add-procedures.R:2:3
   2. │ └─DBI::dbConnect(duckdb::duckdb(), ":memory:") at ./helper-eunomia.R:8:3
   3. ├─base::loadNamespace(x) at ./helper-eunomia.R:8:3
   4. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
   5. │ │ └─base (local) withOneRestart(expr, restarts[[1L]])
   6. │ │   └─base (local) doWithOneRestart(return(expr), restart)
   7. │ └─base::stop(cond)
   8. └─base (local) `<fn>`(`<pckgNtFE>`)
  ── Error ('test-add-procedures.R:27:3'): addProcedures supports infinite and NA window bounds ──
  Error in `(function (cond)  .Internal(C_tryCatchHelper(addr, 1L, cond)))(structure(list(message = "there is no package called 'duckdb'", call = loadNamespace(x), package = "duckdb", lib.loc = NULL), class = c("packageNotFoundError", "error", "condition")))`: error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': there is no package called 'duckdb'
  Backtrace:
      ▆
   1. ├─CohortUtilisation:::hermesTestCdm() at test-add-procedures.R:27:3
   2. │ └─DBI::dbConnect(duckdb::duckdb(), ":memory:") at ./helper-eunomia.R:8:3
   3. ├─base::loadNamespace(x) at ./helper-eunomia.R:8:3
   4. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
   5. │ │ └─base (local) withOneRestart(expr, restarts[[1L]])
   6. │ │   └─base (local) doWithOneRestart(return(expr), restart)
   7. │ └─base::stop(cond)
   8. └─base (local) `<fn>`(`<pckgNtFE>`)
  ── Error ('test-add-visits.R:2:3'): addVisits validates input arguments correctly ──
  Error in `(function (cond)  .Internal(C_tryCatchHelper(addr, 1L, cond)))(structure(list(message = "there is no package called 'duckdb'", call = loadNamespace(x), package = "duckdb", lib.loc = NULL), class = c("packageNotFoundError", "error", "condition")))`: error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': there is no package called 'duckdb'
  Backtrace:
      ▆
   1. ├─CohortUtilisation:::hermesTestCdm() at test-add-visits.R:2:3
   2. │ └─DBI::dbConnect(duckdb::duckdb(), ":memory:") at ./helper-eunomia.R:8:3
   3. ├─base::loadNamespace(x) at ./helper-eunomia.R:8:3
   4. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
   5. │ │ └─base (local) withOneRestart(expr, restarts[[1L]])
   6. │ │   └─base (local) doWithOneRestart(return(expr), restart)
   7. │ └─base::stop(cond)
   8. └─base (local) `<fn>`(`<pckgNtFE>`)
  ── Error ('test-add-visits.R:13:3'): addVisits executes multi-setting visit enrichment (inpatient, outpatient, emergency) ──
  Error in `(function (cond)  .Internal(C_tryCatchHelper(addr, 1L, cond)))(structure(list(message = "there is no package called 'duckdb'", call = loadNamespace(x), package = "duckdb", lib.loc = NULL), class = c("packageNotFoundError", "error", "condition")))`: error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': there is no package called 'duckdb'
  Backtrace:
      ▆
   1. ├─CohortUtilisation:::hermesTestCdm() at test-add-visits.R:13:3
   2. │ └─DBI::dbConnect(duckdb::duckdb(), ":memory:") at ./helper-eunomia.R:8:3
   3. ├─base::loadNamespace(x) at ./helper-eunomia.R:8:3
   4. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
   5. │ │ └─base (local) withOneRestart(expr, restarts[[1L]])
   6. │ │   └─base (local) doWithOneRestart(return(expr), restart)
   7. │ └─base::stop(cond)
   8. └─base (local) `<fn>`(`<pckgNtFE>`)
  ── Error ('test-add-visits.R:58:3'): addVisits filters by specific settings ────
  Error in `(function (cond)  .Internal(C_tryCatchHelper(addr, 1L, cond)))(structure(list(message = "there is no package called 'duckdb'", call = loadNamespace(x), package = "duckdb", lib.loc = NULL), class = c("packageNotFoundError", "error", "condition")))`: error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': there is no package called 'duckdb'
  Backtrace:
      ▆
   1. ├─CohortUtilisation:::hermesTestCdm() at test-add-visits.R:58:3
   2. │ └─DBI::dbConnect(duckdb::duckdb(), ":memory:") at ./helper-eunomia.R:8:3
   3. ├─base::loadNamespace(x) at ./helper-eunomia.R:8:3
   4. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
   5. │ │ └─base (local) withOneRestart(expr, restarts[[1L]])
   6. │ │   └─base (local) doWithOneRestart(return(expr), restart)
   7. │ └─base::stop(cond)
   8. └─base (local) `<fn>`(`<pckgNtFE>`)
  ── Error ('test-add-visits.R:76:3'): addVisits unifies granular specialty stratification across settings ──
  Error in `(function (cond)  .Internal(C_tryCatchHelper(addr, 1L, cond)))(structure(list(message = "there is no package called 'duckdb'", call = loadNamespace(x), package = "duckdb", lib.loc = NULL), class = c("packageNotFoundError", "error", "condition")))`: error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': there is no package called 'duckdb'
  Backtrace:
      ▆
   1. ├─CohortUtilisation:::hermesTestCdm() at test-add-visits.R:76:3
   2. │ └─DBI::dbConnect(duckdb::duckdb(), ":memory:") at ./helper-eunomia.R:8:3
   3. ├─base::loadNamespace(x) at ./helper-eunomia.R:8:3
   4. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
   5. │ │ └─base (local) withOneRestart(expr, restarts[[1L]])
   6. │ │   └─base (local) doWithOneRestart(return(expr), restart)
   7. │ └─base::stop(cond)
   8. └─base (local) `<fn>`(`<pckgNtFE>`)
  ── Error ('test-add-visits.R:108:3'): addVisits supports infinite and NA window bounds with censorDate ──
  Error in `(function (cond)  .Internal(C_tryCatchHelper(addr, 1L, cond)))(structure(list(message = "there is no package called 'duckdb'", call = loadNamespace(x), package = "duckdb", lib.loc = NULL), class = c("packageNotFoundError", "error", "condition")))`: error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': there is no package called 'duckdb'
  Backtrace:
      ▆
   1. ├─CohortUtilisation:::hermesTestCdm() at test-add-visits.R:108:3
   2. │ └─DBI::dbConnect(duckdb::duckdb(), ":memory:") at ./helper-eunomia.R:8:3
   3. ├─base::loadNamespace(x) at ./helper-eunomia.R:8:3
   4. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
   5. │ │ └─base (local) withOneRestart(expr, restarts[[1L]])
   6. │ │   └─base (local) doWithOneRestart(return(expr), restart)
   7. │ └─base::stop(cond)
   8. └─base (local) `<fn>`(`<pckgNtFE>`)
  ── Error ('test-compute-episodes.R:2:3'): computeHospitalizationCohorts collapses stays and flags readmissions ──
  Error in `(function (cond)  .Internal(C_tryCatchHelper(addr, 1L, cond)))(structure(list(message = "there is no package called 'duckdb'", call = loadNamespace(x), package = "duckdb", lib.loc = NULL), class = c("packageNotFoundError", "error", "condition")))`: error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': there is no package called 'duckdb'
  Backtrace:
      ▆
   1. ├─CohortUtilisation:::hermes_test_cdm() at test-compute-episodes.R:2:3
   2. │ └─DBI::dbConnect(duckdb::duckdb(), ":memory:") at ./helper-eunomia.R:8:3
   3. ├─base::loadNamespace(x) at ./helper-eunomia.R:8:3
   4. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
   5. │ │ └─base (local) withOneRestart(expr, restarts[[1L]])
   6. │ │   └─base (local) doWithOneRestart(return(expr), restart)
   7. │ └─base::stop(cond)
   8. └─base (local) `<fn>`(`<pckgNtFE>`)
  ── Error ('test-compute-episodes.R:28:3'): computeInfusionCohorts creates infusion episodes ──
  Error in `(function (cond)  .Internal(C_tryCatchHelper(addr, 1L, cond)))(structure(list(message = "there is no package called 'duckdb'", call = loadNamespace(x), package = "duckdb", lib.loc = NULL), class = c("packageNotFoundError", "error", "condition")))`: error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': there is no package called 'duckdb'
  Backtrace:
      ▆
   1. ├─CohortUtilisation:::hermes_test_cdm() at test-compute-episodes.R:28:3
   2. │ └─DBI::dbConnect(duckdb::duckdb(), ":memory:") at ./helper-eunomia.R:8:3
   3. ├─base::loadNamespace(x) at ./helper-eunomia.R:8:3
   4. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
   5. │ │ └─base (local) withOneRestart(expr, restarts[[1L]])
   6. │ │   └─base (local) doWithOneRestart(return(expr), restart)
   7. │ └─base::stop(cond)
   8. └─base (local) `<fn>`(`<pckgNtFE>`)
  ── Error ('test-hospitalizations.R:2:3'): compute_hospitalization_cohorts collapses overlaps, contiguous visits, and finds readmissions ──
  Error in `(function (cond)  .Internal(C_tryCatchHelper(addr, 1L, cond)))(structure(list(message = "there is no package called 'duckdb'", call = loadNamespace(x), package = "duckdb", lib.loc = NULL), class = c("packageNotFoundError", "error", "condition")))`: error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': there is no package called 'duckdb'
  Backtrace:
      ▆
   1. ├─DBI::dbConnect(duckdb::duckdb(), ":memory:") at test-hospitalizations.R:2:3
   2. ├─base::loadNamespace(x)
   3. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
   4. │ │ └─base (local) withOneRestart(expr, restarts[[1L]])
   5. │ │   └─base (local) doWithOneRestart(return(expr), restart)
   6. │ └─base::stop(cond)
   7. └─base (local) `<fn>`(`<pckgNtFE>`)
  ── Error ('test-summarise-utilization.R:2:3'): summariseUtilization returns a valid summarised_result object ──
  Error in `(function (cond)  .Internal(C_tryCatchHelper(addr, 1L, cond)))(structure(list(message = "there is no package called 'duckdb'", call = loadNamespace(x), package = "duckdb", lib.loc = NULL), class = c("packageNotFoundError", "error", "condition")))`: error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': there is no package called 'duckdb'
  Backtrace:
      ▆
   1. ├─CohortUtilisation:::hermesTestCdm() at test-summarise-utilization.R:2:3
   2. │ └─DBI::dbConnect(duckdb::duckdb(), ":memory:") at ./helper-eunomia.R:8:3
   3. ├─base::loadNamespace(x) at ./helper-eunomia.R:8:3
   4. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
   5. │ │ └─base (local) withOneRestart(expr, restarts[[1L]])
   6. │ │   └─base (local) doWithOneRestart(return(expr), restart)
   7. │ └─base::stop(cond)
   8. └─base (local) `<fn>`(`<pckgNtFE>`)
  ── Error ('test-summarise-utilization.R:30:3'): tableUtilization and plotUtilization format and plot results ──
  Error in `(function (cond)  .Internal(C_tryCatchHelper(addr, 1L, cond)))(structure(list(message = "there is no package called 'duckdb'", call = loadNamespace(x), package = "duckdb", lib.loc = NULL), class = c("packageNotFoundError", "error", "condition")))`: error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': there is no package called 'duckdb'
  Backtrace:
      ▆
   1. ├─CohortUtilisation:::hermesTestCdm() at test-summarise-utilization.R:30:3
   2. │ └─DBI::dbConnect(duckdb::duckdb(), ":memory:") at ./helper-eunomia.R:8:3
   3. ├─base::loadNamespace(x) at ./helper-eunomia.R:8:3
   4. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
   5. │ │ └─base (local) withOneRestart(expr, restarts[[1L]])
   6. │ │   └─base (local) doWithOneRestart(return(expr), restart)
   7. │ └─base::stop(cond)
   8. └─base (local) `<fn>`(`<pckgNtFE>`)
  
  [ FAIL 29 | WARN 0 | SKIP 0 | PASS 0 ]
  Error:
  ! Test failures.
  Execution halted
* checking PDF version of manual ... OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR