• using R Under development (unstable) (2026-09-17 r90557)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     clang version 23.1.1     flang version 23.1.1
• running under: Fedora Linux 44 (Server Edition)
• using session charset: UTF-8 * current time: 2026-09-17 15:23:19 UTC
• using option ‘--no-stop-on-test-error’
• checking for file ‘CohortUtilisation/DESCRIPTION’ ... OK
• this is package ‘CohortUtilisation’ version ‘0.6.1’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... INFO Package suggested but not available for checking: 'duckdb'
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘CohortUtilisation’ can be installed ... OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [8s/11s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking examples ... NONE
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... ERROR   Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output:   > library(testthat)   > library(CohortUtilisation)   >   > test_check("CohortUtilisation")      Attaching package: 'omopgenerics'      The following object is masked from 'package:stats':          filter         Attaching package: 'dplyr'      The following objects are masked from 'package:stats':          filter, lag      The following objects are masked from 'package:base':          intersect, setdiff, setequal, union         Attaching package: 'dbplyr'      The following objects are masked from 'package:dplyr':          ident, sql, sql_escape_ident, sql_escape_string      Saving _problems/test-add-emergency-2.R   Saving _problems/test-add-emergency-12.R   Saving _problems/test-add-emergency-43.R   Saving _problems/test-add-emergency-73.R   Saving _problems/test-add-emergency-92.R   Saving _problems/test-add-inpatients-2.R   Saving _problems/test-add-inpatients-13.R   Saving _problems/test-add-inpatients-43.R   Saving _problems/test-add-inpatients-66.R   Saving _problems/test-add-inpatients-100.R   Saving _problems/test-add-inpatients-119.R   Saving _problems/test-add-outpatient-2.R   Saving _problems/test-add-outpatient-12.R   Saving _problems/test-add-outpatient-39.R   Saving _problems/test-add-outpatient-72.R   Saving _problems/test-add-prescriptions-2.R   Saving _problems/test-add-prescriptions-31.R   Saving _problems/test-add-procedures-2.R   Saving _problems/test-add-procedures-27.R   Saving _problems/test-add-visits-2.R   Saving _problems/test-add-visits-13.R   Saving _problems/test-add-visits-58.R   Saving _problems/test-add-visits-76.R   Saving _problems/test-add-visits-108.R   Saving _problems/test-compute-episodes-2.R   Saving _problems/test-compute-episodes-28.R   Saving _problems/test-hospitalizations-2.R   Saving _problems/test-summarise-utilization-2.R   Saving _problems/test-summarise-utilization-30.R   [ FAIL 29 | WARN 0 | SKIP 0 | PASS 0 ]      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test-add-emergency.R:2:3'): addEmergencyCare validates input arguments correctly ──   Error in `(function (cond) .Internal(C_tryCatchHelper(addr, 1L, cond)))(structure(list(message = "there is no package called 'duckdb'", call = loadNamespace(x), package = "duckdb", lib.loc = NULL), class = c("packageNotFoundError", "error", "condition")))`: error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': there is no package called 'duckdb'   Backtrace:       ▆    1. ├─CohortUtilisation:::hermesTestCdm() at test-add-emergency.R:2:3    2. │ └─DBI::dbConnect(duckdb::duckdb(), ":memory:") at ./helper-eunomia.R:8:3    3. ├─base::loadNamespace(x)    4. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)    5. │ │ └─base (local) withOneRestart(expr, restarts[[1L]])    6. │ │ └─base (local) doWithOneRestart(return(expr), restart)    7. │ └─base::stop(cond)    8. └─base (local) `<fn>`(`<pckgNtFE>`)   ── Error ('test-add-emergency.R:12:3'): addEmergencyCare detects emergency encounters via visit concept IDs and provider specialties ──   Error in `(function (cond) .Internal(C_tryCatchHelper(addr, 1L, cond)))(structure(list(message = "there is no package called 'duckdb'", call = loadNamespace(x), package = "duckdb", lib.loc = NULL), class = c("packageNotFoundError", "error", "condition")))`: error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': there is no package called 'duckdb'   Backtrace:       ▆    1. ├─CohortUtilisation:::hermesTestCdm() at test-add-emergency.R:12:3    2. │ └─DBI::dbConnect(duckdb::duckdb(), ":memory:") at ./helper-eunomia.R:8:3    3. ├─base::loadNamespace(x) at ./helper-eunomia.R:8:3    4. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)    5. │ │ └─base (local) withOneRestart(expr, restarts[[1L]])    6. │ │ └─base (local) doWithOneRestart(return(expr), restart)    7. │ └─base::stop(cond)    8. └─base (local) `<fn>`(`<pckgNtFE>`)   ── Error ('test-add-emergency.R:43:3'): addEmergencyCare stratifies by granular specialty ──   Error in `(function (cond) .Internal(C_tryCatchHelper(addr, 1L, cond)))(structure(list(message = "there is no package called 'duckdb'", call = loadNamespace(x), package = "duckdb", lib.loc = NULL), class = c("packageNotFoundError", "error", "condition")))`: error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': there is no package called 'duckdb'   Backtrace:       ▆    1. ├─CohortUtilisation:::hermesTestCdm() at test-add-emergency.R:43:3    2. │ └─DBI::dbConnect(duckdb::duckdb(), ":memory:") at ./helper-eunomia.R:8:3    3. ├─base::loadNamespace(x) at ./helper-eunomia.R:8:3    4. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)    5. │ │ └─base (local) withOneRestart(expr, restarts[[1L]])    6. │ │ └─base (local) doWithOneRestart(return(expr), restart)    7. │ └─base::stop(cond)    8. └─base (local) `<fn>`(`<pckgNtFE>`)   ── Error ('test-add-emergency.R:73:3'): addEmergency and addEmergencyVisits aliases work identically ──   Error in `(function (cond) .Internal(C_tryCatchHelper(addr, 1L, cond)))(structure(list(message = "there is no package called 'duckdb'", call = loadNamespace(x), package = "duckdb", lib.loc = NULL), class = c("packageNotFoundError", "error", "condition")))`: error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': there is no package called 'duckdb'   Backtrace:       ▆    1. ├─CohortUtilisation:::hermesTestCdm() at test-add-emergency.R:73:3    2. │ └─DBI::dbConnect(duckdb::duckdb(), ":memory:") at ./helper-eunomia.R:8:3    3. ├─base::loadNamespace(x) at ./helper-eunomia.R:8:3    4. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)    5. │ │ └─base (local) withOneRestart(expr, restarts[[1L]])    6. │ │ └─base (local) doWithOneRestart(return(expr), restart)    7. │ └─base::stop(cond)    8. └─base (local) `<fn>`(`<pckgNtFE>`)   ── Error ('test-add-emergency.R:92:3'): addEmergencyCare supports infinite and NA windows ──   Error in `(function (cond) .Internal(C_tryCatchHelper(addr, 1L, cond)))(structure(list(message = "there is no package called 'duckdb'", call = loadNamespace(x), package = "duckdb", lib.loc = NULL), class = c("packageNotFoundError", "error", "condition")))`: error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': there is no package called 'duckdb'   Backtrace:       ▆    1. ├─CohortUtilisation:::hermesTestCdm() at test-add-emergency.R:92:3    2. │ └─DBI::dbConnect(duckdb::duckdb(), ":memory:") at ./helper-eunomia.R:8:3    3. ├─base::loadNamespace(x) at ./helper-eunomia.R:8:3    4. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)    5. │ │ └─base (local) withOneRestart(expr, restarts[[1L]])    6. │ │ └─base (local) doWithOneRestart(return(expr), restart)    7. │ └─base::stop(cond)    8. └─base (local) `<fn>`(`<pckgNtFE>`)   ── Error ('test-add-inpatients.R:2:3'): addInpatients validates input arguments correctly ──   Error in `(function (cond) .Internal(C_tryCatchHelper(addr, 1L, cond)))(structure(list(message = "there is no package called 'duckdb'", call = loadNamespace(x), package = "duckdb", lib.loc = NULL), class = c("packageNotFoundError", "error", "condition")))`: error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': there is no package called 'duckdb'   Backtrace:       ▆    1. ├─CohortUtilisation:::hermesTestCdm() at test-add-inpatients.R:2:3    2. │ └─DBI::dbConnect(duckdb::duckdb(), ":memory:") at ./helper-eunomia.R:8:3    3. ├─base::loadNamespace(x) at ./helper-eunomia.R:8:3    4. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)    5. │ │ └─base (local) withOneRestart(expr, restarts[[1L]])    6. │ │ └─base (local) doWithOneRestart(return(expr), restart)    7. │ └─base::stop(cond)    8. └─base (local) `<fn>`(`<pckgNtFE>`)   ── Error ('test-add-inpatients.R:13:3'): addInpatients computes admissions, LOS, ICU stays, and readmissions ──   Error in `(function (cond) .Internal(C_tryCatchHelper(addr, 1L, cond)))(structure(list(message = "there is no package called 'duckdb'", call = loadNamespace(x), package = "duckdb", lib.loc = NULL), class = c("packageNotFoundError", "error", "condition")))`: error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': there is no package called 'duckdb'   Backtrace:       ▆    1. ├─CohortUtilisation:::hermesTestCdm() at test-add-inpatients.R:13:3    2. │ └─DBI::dbConnect(duckdb::duckdb(), ":memory:") at ./helper-eunomia.R:8:3    3. ├─base::loadNamespace(x) at ./helper-eunomia.R:8:3    4. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)    5. │ │ └─base (local) withOneRestart(expr, restarts[[1L]])    6. │ │ └─base (local) doWithOneRestart(return(expr), restart)    7. │ └─base::stop(cond)    8. └─base (local) `<fn>`(`<pckgNtFE>`)   ── Error ('test-add-inpatients.R:43:3'): addInpatients detects ICU stays via provider icuSpecialtyConceptIds ──   Error in `(function (cond) .Internal(C_tryCatchHelper(addr, 1L, cond)))(structure(list(message = "there is no package called 'duckdb'", call = loadNamespace(x), package = "duckdb", lib.loc = NULL), class = c("packageNotFoundError", "error", "condition")))`: error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': there is no package called 'duckdb'   Backtrace:       ▆    1. ├─CohortUtilisation:::hermesTestCdm() at test-add-inpatients.R:43:3    2. │ └─DBI::dbConnect(duckdb::duckdb(), ":memory:") at ./helper-eunomia.R:8:3    3. ├─base::loadNamespace(x) at ./helper-eunomia.R:8:3    4. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)    5. │ │ └─base (local) withOneRestart(expr, restarts[[1L]])    6. │ │ └─base (local) doWithOneRestart(return(expr), restart)    7. │ └─base::stop(cond)    8. └─base (local) `<fn>`(`<pckgNtFE>`)   ── Error ('test-add-inpatients.R:66:3'): addInpatients computes granular specialty breakdowns ──   Error in `(function (cond) .Internal(C_tryCatchHelper(addr, 1L, cond)))(structure(list(message = "there is no package called 'duckdb'", call = loadNamespace(x), package = "duckdb", lib.loc = NULL), class = c("packageNotFoundError", "error", "condition")))`: error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': there is no package called 'duckdb'   Backtrace:       ▆    1. ├─CohortUtilisation:::hermesTestCdm() at test-add-inpatients.R:66:3    2. │ └─DBI::dbConnect(duckdb::duckdb(), ":memory:") at ./helper-eunomia.R:8:3    3. ├─base::loadNamespace(x) at ./helper-eunomia.R:8:3    4. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)    5. │ │ └─base (local) withOneRestart(expr, restarts[[1L]])    6. │ │ └─base (local) doWithOneRestart(return(expr), restart)    7. │ └─base::stop(cond)    8. └─base (local) `<fn>`(`<pckgNtFE>`)   ── Error ('test-add-inpatients.R:100:3'): addHospitalizations and addInpatient backward-compatibility aliases work identically ──   Error in `(function (cond) .Internal(C_tryCatchHelper(addr, 1L, cond)))(structure(list(message = "there is no package called 'duckdb'", call = loadNamespace(x), package = "duckdb", lib.loc = NULL), class = c("packageNotFoundError", "error", "condition")))`: error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': there is no package called 'duckdb'   Backtrace:       ▆    1. ├─CohortUtilisation:::hermesTestCdm() at test-add-inpatients.R:100:3    2. │ └─DBI::dbConnect(duckdb::duckdb(), ":memory:") at ./helper-eunomia.R:8:3    3. ├─base::loadNamespace(x) at ./helper-eunomia.R:8:3    4. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)    5. │ │ └─base (local) withOneRestart(expr, restarts[[1L]])    6. │ │ └─base (local) doWithOneRestart(return(expr), restart)    7. │ └─base::stop(cond)    8. └─base (local) `<fn>`(`<pckgNtFE>`)   ── Error ('test-add-inpatients.R:119:3'): addInpatients supports infinite and NA window bounds without case mismatch ──   Error in `(function (cond) .Internal(C_tryCatchHelper(addr, 1L, cond)))(structure(list(message = "there is no package called 'duckdb'", call = loadNamespace(x), package = "duckdb", lib.loc = NULL), class = c("packageNotFoundError", "error", "condition")))`: error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': there is no package called 'duckdb'   Backtrace:       ▆    1. ├─CohortUtilisation:::hermesTestCdm() at test-add-inpatients.R:119:3    2. │ └─DBI::dbConnect(duckdb::duckdb(), ":memory:") at ./helper-eunomia.R:8:3    3. ├─base::loadNamespace(x) at ./helper-eunomia.R:8:3    4. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)    5. │ │ └─base (local) withOneRestart(expr, restarts[[1L]])    6. │ │ └─base (local) doWithOneRestart(return(expr), restart)    7. │ └─base::stop(cond)    8. └─base (local) `<fn>`(`<pckgNtFE>`)   ── Error ('test-add-outpatient.R:2:3'): addOutpatientVisits validates input arguments ──   Error in `(function (cond) .Internal(C_tryCatchHelper(addr, 1L, cond)))(structure(list(message = "there is no package called 'duckdb'", call = loadNamespace(x), package = "duckdb", lib.loc = NULL), class = c("packageNotFoundError", "error", "condition")))`: error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': there is no package called 'duckdb'   Backtrace:       ▆    1. ├─CohortUtilisation:::hermes_test_cdm() at test-add-outpatient.R:2:3    2. │ └─DBI::dbConnect(duckdb::duckdb(), ":memory:") at ./helper-eunomia.R:8:3    3. ├─base::loadNamespace(x) at ./helper-eunomia.R:8:3    4. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)    5. │ │ └─base (local) withOneRestart(expr, restarts[[1L]])    6. │ │ └─base (local) doWithOneRestart(return(expr), restart)    7. │ └─base::stop(cond)    8. └─base (local) `<fn>`(`<pckgNtFE>`)   ── Error ('test-add-outpatient.R:12:3'): addOutpatientVisits stratifies GP, Specialist, and Emergency visits ──   Error in `(function (cond) .Internal(C_tryCatchHelper(addr, 1L, cond)))(structure(list(message = "there is no package called 'duckdb'", call = loadNamespace(x), package = "duckdb", lib.loc = NULL), class = c("packageNotFoundError", "error", "condition")))`: error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': there is no package called 'duckdb'   Backtrace:       ▆    1. ├─CohortUtilisation:::hermes_test_cdm() at test-add-outpatient.R:12:3    2. │ └─DBI::dbConnect(duckdb::duckdb(), ":memory:") at ./helper-eunomia.R:8:3    3. ├─base::loadNamespace(x) at ./helper-eunomia.R:8:3    4. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)    5. │ │ └─base (local) withOneRestart(expr, restarts[[1L]])    6. │ │ └─base (local) doWithOneRestart(return(expr), restart)    7. │ └─base::stop(cond)    8. └─base (local) `<fn>`(`<pckgNtFE>`)   ── Error ('test-add-outpatient.R:39:3'): addOutpatientVisits computes granular specialty breakdowns ──   Error in `(function (cond) .Internal(C_tryCatchHelper(addr, 1L, cond)))(structure(list(message = "there is no package called 'duckdb'", call = loadNamespace(x), package = "duckdb", lib.loc = NULL), class = c("packageNotFoundError", "error", "condition")))`: error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': there is no package called 'duckdb'   Backtrace:       ▆    1. ├─CohortUtilisation:::hermes_test_cdm() at test-add-outpatient.R:39:3    2. │ └─DBI::dbConnect(duckdb::duckdb(), ":memory:") at ./helper-eunomia.R:8:3    3. ├─base::loadNamespace(x) at ./helper-eunomia.R:8:3    4. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)    5. │ │ └─base (local) withOneRestart(expr, restarts[[1L]])    6. │ │ └─base (local) doWithOneRestart(return(expr), restart)    7. │ └─base::stop(cond)    8. └─base (local) `<fn>`(`<pckgNtFE>`)   ── Error ('test-add-outpatient.R:72:3'): addOutpatientVisits supports infinite and NA window bounds ──   Error in `(function (cond) .Internal(C_tryCatchHelper(addr, 1L, cond)))(structure(list(message = "there is no package called 'duckdb'", call = loadNamespace(x), package = "duckdb", lib.loc = NULL), class = c("packageNotFoundError", "error", "condition")))`: error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': there is no package called 'duckdb'   Backtrace:       ▆    1. ├─CohortUtilisation:::hermesTestCdm() at test-add-outpatient.R:72:3    2. │ └─DBI::dbConnect(duckdb::duckdb(), ":memory:") at ./helper-eunomia.R:8:3    3. ├─base::loadNamespace(x) at ./helper-eunomia.R:8:3    4. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)    5. │ │ └─base (local) withOneRestart(expr, restarts[[1L]])    6. │ │ └─base (local) doWithOneRestart(return(expr), restart)    7. │ └─base::stop(cond)    8. └─base (local) `<fn>`(`<pckgNtFE>`)   ── Error ('test-add-prescriptions.R:2:3'): addPrescriptions extracts fills, days supply, PDC, and infusions ──   Error in `(function (cond) .Internal(C_tryCatchHelper(addr, 1L, cond)))(structure(list(message = "there is no package called 'duckdb'", call = loadNamespace(x), package = "duckdb", lib.loc = NULL), class = c("packageNotFoundError", "error", "condition")))`: error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': there is no package called 'duckdb'   Backtrace:       ▆    1. ├─CohortUtilisation:::hermes_test_cdm() at test-add-prescriptions.R:2:3    2. │ └─DBI::dbConnect(duckdb::duckdb(), ":memory:") at ./helper-eunomia.R:8:3    3. ├─base::loadNamespace(x) at ./helper-eunomia.R:8:3    4. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)    5. │ │ └─base (local) withOneRestart(expr, restarts[[1L]])    6. │ │ └─base (local) doWithOneRestart(return(expr), restart)    7. │ └─base::stop(cond)    8. └─base (local) `<fn>`(`<pckgNtFE>`)   ── Error ('test-add-prescriptions.R:31:3'): addPrescriptions supports infinite and NA window bounds ──   Error in `(function (cond) .Internal(C_tryCatchHelper(addr, 1L, cond)))(structure(list(message = "there is no package called 'duckdb'", call = loadNamespace(x), package = "duckdb", lib.loc = NULL), class = c("packageNotFoundError", "error", "condition")))`: error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': there is no package called 'duckdb'   Backtrace:       ▆    1. ├─CohortUtilisation:::hermesTestCdm() at test-add-prescriptions.R:31:3    2. │ └─DBI::dbConnect(duckdb::duckdb(), ":memory:") at ./helper-eunomia.R:8:3    3. ├─base::loadNamespace(x) at ./helper-eunomia.R:8:3    4. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)    5. │ │ └─base (local) withOneRestart(expr, restarts[[1L]])    6. │ │ └─base (local) doWithOneRestart(return(expr), restart)    7. │ └─base::stop(cond)    8. └─base (local) `<fn>`(`<pckgNtFE>`)   ── Error ('test-add-procedures.R:2:3'): addProcedures extracts labs, imaging, and procedure occurrences ──   Error in `(function (cond) .Internal(C_tryCatchHelper(addr, 1L, cond)))(structure(list(message = "there is no package called 'duckdb'", call = loadNamespace(x), package = "duckdb", lib.loc = NULL), class = c("packageNotFoundError", "error", "condition")))`: error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': there is no package called 'duckdb'   Backtrace:       ▆    1. ├─CohortUtilisation:::hermes_test_cdm() at test-add-procedures.R:2:3    2. │ └─DBI::dbConnect(duckdb::duckdb(), ":memory:") at ./helper-eunomia.R:8:3    3. ├─base::loadNamespace(x) at ./helper-eunomia.R:8:3    4. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)    5. │ │ └─base (local) withOneRestart(expr, restarts[[1L]])    6. │ │ └─base (local) doWithOneRestart(return(expr), restart)    7. │ └─base::stop(cond)    8. └─base (local) `<fn>`(`<pckgNtFE>`)   ── Error ('test-add-procedures.R:27:3'): addProcedures supports infinite and NA window bounds ──   Error in `(function (cond) .Internal(C_tryCatchHelper(addr, 1L, cond)))(structure(list(message = "there is no package called 'duckdb'", call = loadNamespace(x), package = "duckdb", lib.loc = NULL), class = c("packageNotFoundError", "error", "condition")))`: error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': there is no package called 'duckdb'   Backtrace:       ▆    1. ├─CohortUtilisation:::hermesTestCdm() at test-add-procedures.R:27:3    2. │ └─DBI::dbConnect(duckdb::duckdb(), ":memory:") at ./helper-eunomia.R:8:3    3. ├─base::loadNamespace(x) at ./helper-eunomia.R:8:3    4. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)    5. │ │ └─base (local) withOneRestart(expr, restarts[[1L]])    6. │ │ └─base (local) doWithOneRestart(return(expr), restart)    7. │ └─base::stop(cond)    8. └─base (local) `<fn>`(`<pckgNtFE>`)   ── Error ('test-add-visits.R:2:3'): addVisits validates input arguments correctly ──   Error in `(function (cond) .Internal(C_tryCatchHelper(addr, 1L, cond)))(structure(list(message = "there is no package called 'duckdb'", call = loadNamespace(x), package = "duckdb", lib.loc = NULL), class = c("packageNotFoundError", "error", "condition")))`: error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': there is no package called 'duckdb'   Backtrace:       ▆    1. ├─CohortUtilisation:::hermesTestCdm() at test-add-visits.R:2:3    2. │ └─DBI::dbConnect(duckdb::duckdb(), ":memory:") at ./helper-eunomia.R:8:3    3. ├─base::loadNamespace(x) at ./helper-eunomia.R:8:3    4. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)    5. │ │ └─base (local) withOneRestart(expr, restarts[[1L]])    6. │ │ └─base (local) doWithOneRestart(return(expr), restart)    7. │ └─base::stop(cond)    8. └─base (local) `<fn>`(`<pckgNtFE>`)   ── Error ('test-add-visits.R:13:3'): addVisits executes multi-setting visit enrichment (inpatient, outpatient, emergency) ──   Error in `(function (cond) .Internal(C_tryCatchHelper(addr, 1L, cond)))(structure(list(message = "there is no package called 'duckdb'", call = loadNamespace(x), package = "duckdb", lib.loc = NULL), class = c("packageNotFoundError", "error", "condition")))`: error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': there is no package called 'duckdb'   Backtrace:       ▆    1. ├─CohortUtilisation:::hermesTestCdm() at test-add-visits.R:13:3    2. │ └─DBI::dbConnect(duckdb::duckdb(), ":memory:") at ./helper-eunomia.R:8:3    3. ├─base::loadNamespace(x) at ./helper-eunomia.R:8:3    4. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)    5. │ │ └─base (local) withOneRestart(expr, restarts[[1L]])    6. │ │ └─base (local) doWithOneRestart(return(expr), restart)    7. │ └─base::stop(cond)    8. └─base (local) `<fn>`(`<pckgNtFE>`)   ── Error ('test-add-visits.R:58:3'): addVisits filters by specific settings ────   Error in `(function (cond) .Internal(C_tryCatchHelper(addr, 1L, cond)))(structure(list(message = "there is no package called 'duckdb'", call = loadNamespace(x), package = "duckdb", lib.loc = NULL), class = c("packageNotFoundError", "error", "condition")))`: error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': there is no package called 'duckdb'   Backtrace:       ▆    1. ├─CohortUtilisation:::hermesTestCdm() at test-add-visits.R:58:3    2. │ └─DBI::dbConnect(duckdb::duckdb(), ":memory:") at ./helper-eunomia.R:8:3    3. ├─base::loadNamespace(x) at ./helper-eunomia.R:8:3    4. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)    5. │ │ └─base (local) withOneRestart(expr, restarts[[1L]])    6. │ │ └─base (local) doWithOneRestart(return(expr), restart)    7. │ └─base::stop(cond)    8. └─base (local) `<fn>`(`<pckgNtFE>`)   ── Error ('test-add-visits.R:76:3'): addVisits unifies granular specialty stratification across settings ──   Error in `(function (cond) .Internal(C_tryCatchHelper(addr, 1L, cond)))(structure(list(message = "there is no package called 'duckdb'", call = loadNamespace(x), package = "duckdb", lib.loc = NULL), class = c("packageNotFoundError", "error", "condition")))`: error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': there is no package called 'duckdb'   Backtrace:       ▆    1. ├─CohortUtilisation:::hermesTestCdm() at test-add-visits.R:76:3    2. │ └─DBI::dbConnect(duckdb::duckdb(), ":memory:") at ./helper-eunomia.R:8:3    3. ├─base::loadNamespace(x) at ./helper-eunomia.R:8:3    4. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)    5. │ │ └─base (local) withOneRestart(expr, restarts[[1L]])    6. │ │ └─base (local) doWithOneRestart(return(expr), restart)    7. │ └─base::stop(cond)    8. └─base (local) `<fn>`(`<pckgNtFE>`)   ── Error ('test-add-visits.R:108:3'): addVisits supports infinite and NA window bounds with censorDate ──   Error in `(function (cond) .Internal(C_tryCatchHelper(addr, 1L, cond)))(structure(list(message = "there is no package called 'duckdb'", call = loadNamespace(x), package = "duckdb", lib.loc = NULL), class = c("packageNotFoundError", "error", "condition")))`: error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': there is no package called 'duckdb'   Backtrace:       ▆    1. ├─CohortUtilisation:::hermesTestCdm() at test-add-visits.R:108:3    2. │ └─DBI::dbConnect(duckdb::duckdb(), ":memory:") at ./helper-eunomia.R:8:3    3. ├─base::loadNamespace(x) at ./helper-eunomia.R:8:3    4. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)    5. │ │ └─base (local) withOneRestart(expr, restarts[[1L]])    6. │ │ └─base (local) doWithOneRestart(return(expr), restart)    7. │ └─base::stop(cond)    8. └─base (local) `<fn>`(`<pckgNtFE>`)   ── Error ('test-compute-episodes.R:2:3'): computeHospitalizationCohorts collapses stays and flags readmissions ──   Error in `(function (cond) .Internal(C_tryCatchHelper(addr, 1L, cond)))(structure(list(message = "there is no package called 'duckdb'", call = loadNamespace(x), package = "duckdb", lib.loc = NULL), class = c("packageNotFoundError", "error", "condition")))`: error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': there is no package called 'duckdb'   Backtrace:       ▆    1. ├─CohortUtilisation:::hermes_test_cdm() at test-compute-episodes.R:2:3    2. │ └─DBI::dbConnect(duckdb::duckdb(), ":memory:") at ./helper-eunomia.R:8:3    3. ├─base::loadNamespace(x) at ./helper-eunomia.R:8:3    4. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)    5. │ │ └─base (local) withOneRestart(expr, restarts[[1L]])    6. │ │ └─base (local) doWithOneRestart(return(expr), restart)    7. │ └─base::stop(cond)    8. └─base (local) `<fn>`(`<pckgNtFE>`)   ── Error ('test-compute-episodes.R:28:3'): computeInfusionCohorts creates infusion episodes ──   Error in `(function (cond) .Internal(C_tryCatchHelper(addr, 1L, cond)))(structure(list(message = "there is no package called 'duckdb'", call = loadNamespace(x), package = "duckdb", lib.loc = NULL), class = c("packageNotFoundError", "error", "condition")))`: error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': there is no package called 'duckdb'   Backtrace:       ▆    1. ├─CohortUtilisation:::hermes_test_cdm() at test-compute-episodes.R:28:3    2. │ └─DBI::dbConnect(duckdb::duckdb(), ":memory:") at ./helper-eunomia.R:8:3    3. ├─base::loadNamespace(x) at ./helper-eunomia.R:8:3    4. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)    5. │ │ └─base (local) withOneRestart(expr, restarts[[1L]])    6. │ │ └─base (local) doWithOneRestart(return(expr), restart)    7. │ └─base::stop(cond)    8. └─base (local) `<fn>`(`<pckgNtFE>`)   ── Error ('test-hospitalizations.R:2:3'): compute_hospitalization_cohorts collapses overlaps, contiguous visits, and finds readmissions ──   Error in `(function (cond) .Internal(C_tryCatchHelper(addr, 1L, cond)))(structure(list(message = "there is no package called 'duckdb'", call = loadNamespace(x), package = "duckdb", lib.loc = NULL), class = c("packageNotFoundError", "error", "condition")))`: error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': there is no package called 'duckdb'   Backtrace:       ▆    1. ├─DBI::dbConnect(duckdb::duckdb(), ":memory:") at test-hospitalizations.R:2:3    2. ├─base::loadNamespace(x)    3. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)    4. │ │ └─base (local) withOneRestart(expr, restarts[[1L]])    5. │ │ └─base (local) doWithOneRestart(return(expr), restart)    6. │ └─base::stop(cond)    7. └─base (local) `<fn>`(`<pckgNtFE>`)   ── Error ('test-summarise-utilization.R:2:3'): summariseUtilization returns a valid summarised_result object ──   Error in `(function (cond) .Internal(C_tryCatchHelper(addr, 1L, cond)))(structure(list(message = "there is no package called 'duckdb'", call = loadNamespace(x), package = "duckdb", lib.loc = NULL), class = c("packageNotFoundError", "error", "condition")))`: error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': there is no package called 'duckdb'   Backtrace:       ▆    1. ├─CohortUtilisation:::hermesTestCdm() at test-summarise-utilization.R:2:3    2. │ └─DBI::dbConnect(duckdb::duckdb(), ":memory:") at ./helper-eunomia.R:8:3    3. ├─base::loadNamespace(x) at ./helper-eunomia.R:8:3    4. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)    5. │ │ └─base (local) withOneRestart(expr, restarts[[1L]])    6. │ │ └─base (local) doWithOneRestart(return(expr), restart)    7. │ └─base::stop(cond)    8. └─base (local) `<fn>`(`<pckgNtFE>`)   ── Error ('test-summarise-utilization.R:30:3'): tableUtilization and plotUtilization format and plot results ──   Error in `(function (cond) .Internal(C_tryCatchHelper(addr, 1L, cond)))(structure(list(message = "there is no package called 'duckdb'", call = loadNamespace(x), package = "duckdb", lib.loc = NULL), class = c("packageNotFoundError", "error", "condition")))`: error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': there is no package called 'duckdb'   Backtrace:       ▆    1. ├─CohortUtilisation:::hermesTestCdm() at test-summarise-utilization.R:30:3    2. │ └─DBI::dbConnect(duckdb::duckdb(), ":memory:") at ./helper-eunomia.R:8:3    3. ├─base::loadNamespace(x) at ./helper-eunomia.R:8:3    4. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)    5. │ │ └─base (local) withOneRestart(expr, restarts[[1L]])    6. │ │ └─base (local) doWithOneRestart(return(expr), restart)    7. │ └─base::stop(cond)    8. └─base (local) `<fn>`(`<pckgNtFE>`)      [ FAIL 29 | WARN 0 | SKIP 0 | PASS 0 ]   Error:   ! Test failures.   Execution halted
• checking PDF version of manual ... OK
• checking HTML version of manual ... OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 1 ERROR