* using log directory ‘/data/localhost/ripley/R/packages/tests-clang/CohortCosts.Rcheck’
* using R Under development (unstable) (2026-09-15 r90540)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    clang version 23.1.1
    flang version 23.1.1
* running under: Fedora Linux 44 (Server Edition)
* using session charset: UTF-8
* current time: 2026-09-16 05:22:59 UTC
* using option ‘--no-stop-on-test-error’
* checking for file ‘CohortCosts/DESCRIPTION’ ... OK
* this is package ‘CohortCosts’ version ‘0.6.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... INFO
Package suggested but not available for checking: 'duckdb'
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘CohortCosts’ can be installed ... [5s/13s] OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-clang/CohortCosts-00install.html' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [7s/17s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... NONE
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... ERROR
  Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(CohortCosts)
  > 
  > test_check("CohortCosts")
  
  Attaching package: 'omopgenerics'
  
  The following object is masked from 'package:stats':
  
      filter
  
  
  Attaching package: 'dplyr'
  
  The following objects are masked from 'package:stats':
  
      filter, lag
  
  The following objects are masked from 'package:base':
  
      intersect, setdiff, setequal, union
  
  
  Attaching package: 'dbplyr'
  
  The following objects are masked from 'package:dplyr':
  
      ident, sql, sql_escape_ident, sql_escape_string
  
  Saving _problems/test-add-costs-2.R
  Saving _problems/test-add-costs-28.R
  Saving _problems/test-summarise-costs-2.R
  [ FAIL 3 | WARN 0 | SKIP 0 | PASS 0 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-add-costs.R:2:3'): addCosts extracts and aggregates domain and total costs ──
  Error in `(function (cond)  .Internal(C_tryCatchHelper(addr, 1L, cond)))(structure(list(message = "there is no package called 'duckdb'", call = loadNamespace(x), package = "duckdb", lib.loc = NULL), class = c("packageNotFoundError", "error", "condition")))`: error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': there is no package called 'duckdb'
  Backtrace:
      ▆
   1. ├─CohortCosts:::hermes_test_cdm() at test-add-costs.R:2:3
   2. │ └─DBI::dbConnect(duckdb::duckdb(), ":memory:") at ./helper-eunomia.R:8:3
   3. ├─base::loadNamespace(x)
   4. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
   5. │ │ └─base (local) withOneRestart(expr, restarts[[1L]])
   6. │ │   └─base (local) doWithOneRestart(return(expr), restart)
   7. │ └─base::stop(cond)
   8. └─base (local) `<fn>`(`<pckgNtFE>`)
  ── Error ('test-add-costs.R:28:3'): addCosts supports infinite and NA window bounds ──
  Error in `(function (cond)  .Internal(C_tryCatchHelper(addr, 1L, cond)))(structure(list(message = "there is no package called 'duckdb'", call = loadNamespace(x), package = "duckdb", lib.loc = NULL), class = c("packageNotFoundError", "error", "condition")))`: error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': there is no package called 'duckdb'
  Backtrace:
      ▆
   1. ├─CohortCosts:::hermesTestCdm() at test-add-costs.R:28:3
   2. │ └─DBI::dbConnect(duckdb::duckdb(), ":memory:") at ./helper-eunomia.R:8:3
   3. ├─base::loadNamespace(x) at ./helper-eunomia.R:8:3
   4. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
   5. │ │ └─base (local) withOneRestart(expr, restarts[[1L]])
   6. │ │   └─base (local) doWithOneRestart(return(expr), restart)
   7. │ └─base::stop(cond)
   8. └─base (local) `<fn>`(`<pckgNtFE>`)
  ── Error ('test-summarise-costs.R:2:3'): summariseCosts returns valid summarised_result and tableCosts formats it ──
  Error in `(function (cond)  .Internal(C_tryCatchHelper(addr, 1L, cond)))(structure(list(message = "there is no package called 'duckdb'", call = loadNamespace(x), package = "duckdb", lib.loc = NULL), class = c("packageNotFoundError", "error", "condition")))`: error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': there is no package called 'duckdb'
  Backtrace:
      ▆
   1. ├─CohortCosts:::hermesTestCdm() at test-summarise-costs.R:2:3
   2. │ └─DBI::dbConnect(duckdb::duckdb(), ":memory:") at ./helper-eunomia.R:8:3
   3. ├─base::loadNamespace(x) at ./helper-eunomia.R:8:3
   4. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
   5. │ │ └─base (local) withOneRestart(expr, restarts[[1L]])
   6. │ │   └─base (local) doWithOneRestart(return(expr), restart)
   7. │ └─base::stop(cond)
   8. └─base (local) `<fn>`(`<pckgNtFE>`)
  
  [ FAIL 3 | WARN 0 | SKIP 0 | PASS 0 ]
  Error:
  ! Test failures.
  Execution halted
* checking PDF version of manual ... OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR