- using R Under development (unstable) (2026-03-15 r89632)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
clang version 22.1.1 (https://github.com/llvm/llvm-project fef02d48c08db859ef83f84232ed78bd9d1c323a)
flang version 22.1.1 (https://github.com/llvm/llvm-project fef02d48c08db859ef83f84232ed78bd9d1c323a)
- running under: Fedora Linux 42 (Workstation Edition)
- using session charset: UTF-8
* current time: 2026-03-15 18:57:48 UTC
- using option ‘--no-stop-on-test-error’
- checking for file ‘CohortCharacteristics/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘CohortCharacteristics’ version ‘1.1.1’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘CohortCharacteristics’ can be installed ... [12s/16s] OK
See the install log for details.
- checking installed package size ... INFO
installed size is 5.7Mb
sub-directories of 1Mb or more:
doc 3.6Mb
help 1.8Mb
- checking package directory ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [22s/34s] OK
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [22s/36s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [14m/11m] ERROR
Running ‘spelling.R’
Running ‘testthat.R’ [14m/11m]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(CohortCharacteristics)
>
> test_check("CohortCharacteristics")
Starting 2 test processes.
> test-plotCohortTiming.R: i The following estimates will be calculated:
> test-plotCohortTiming.R: * days_between_cohort_entries: min, q25, median, q75, max, density
> test-plotCohortTiming.R: ! Table is collected to memory as not all requested estimates are supported on the database side
> test-plotCohortTiming.R: > Start summary of data, at 2026-03-15 19:00:49.871974
> test-plotCohortTiming.R: v Summary finished, at 2026-03-15 19:00:50.882409
> test-plotCohortTiming.R: `result_id` is not present in result.
> test-plotCohortTiming.R: `result_id` is not present in result.
> test-plotCohortTiming.R: `result_id` is not present in result.
> test-plotCohortTiming.R: `result_id` is not present in result.
Saving _problems/test-plotCohortTiming-245.R
> test-plotCohortAttrition.R: i The following estimates will be calculated:
> test-plotCohortAttrition.R: * cohort_end_date: min, q25, median, q75, max
> test-plotCohortAttrition.R: * cohort_start_date: min, q25, media
> test-plotCohortAttrition.R: n, q75, max
> test-plotCohortAttrition.R: ! Table is collected to memory as not all requested estimates are supported on the database side
> test-plotCohortAttrition.R: > Start summary of data, at 2026-03-15 19:01:05.478079
> test-plotCohortAttrition.R: v Summary finished, at 2026-03-15 19:01:05.729515
> test-plotLargeScaleCharacteristics.R: i Summarising large scale characteristics
> test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1)
> test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ...
> test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ...
> test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ...
> test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ...
> test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ...
> test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ...
> test-summariseCharacteristics.R: i adding demographics columns
> test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ...
> test-plotLargeScaleCharacteristics.R: Formatting result
> test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/2
> test-summariseCharacteristics.R: window names casted to snake_case:
> test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0`
> test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/2
> test-summariseCharacteristics.R: window names casted to snake_case:
> test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0`
> test-summariseCharacteristics.R: i summarising data
> test-summariseCharacteristics.R: i summarising cohort exposed
> test-summariseCharacteristics.R: i summarising cohort unexposed
> test-summariseCharacteristics.R: v summariseCharacteristics finished!
> test-summariseCharacteristics.R: i adding demographics columns
> test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/3
> test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/3
> test-plotLargeScaleCharacteristics.R: v Summarising large scale characteristics
> test-summariseCharacteristics.R: i adding cohortIntersectFlag 3/3
> test-summariseCharacteristics.R: window names casted to snake_case:
> test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0`
> test-summariseCharacteristics.R: i summarising data
> test-summariseCharacteristics.R: i summarising cohort exposed
> test-summariseCharacteristics.R: i summarising cohort unexposed
> test-summariseCharacteristics.R: v summariseCharacteristics finished!
> test-summariseCharacteristics.R: i adding demographics columns
> test-summariseCharacteristics.R: i summarising data
> test-summariseCharacteristics.R: i summarising cohort exposed
> test-summariseCharacteristics.R: i summarising cohort unexposed
> test-summariseCharacteristics.R: v summariseCharacteristics finished!
> test-summariseCharacteristics.R: i summarising data
> test-summariseCharacteristics.R: i summarising cohort exposed
> test-summariseCharacteristics.R: i summarising cohort unexposed
> test-summariseCharacteristics.R: v summariseCharacteristics finished!
> test-summariseCharacteristics.R: i adding demographics columns
> test-summariseCharacteristics.R: i summarising data
> test-summariseCharacteristics.R: i summarising cohort exposed
> test-summariseCharacteristics.R: i summarising cohort unexposed
> test-summariseCharacteristics.R: v summariseCharacteristics finished!
> test-summariseCharacteristics.R: i adding demographics columns
> test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1
> test-summariseCharacteristics.R: window names casted to snake_case:
> test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0`
> test-summariseCharacteristics.R: i summarising data
> test-summariseCharacteristics.R: i summarising cohort exposed
> test-summariseCharacteristics.R: i summarising cohort unexposed
> test-summariseCharacteristics.R: v summariseCharacteristics finished!
> test-summariseCharacteristics.R: i adding demographics columns
> test-summariseCharacteristics.R: i summarising data
> test-summariseCharacteristics.R: i summarising cohort exposed
> test-summariseCharacteristics.R: i summarising cohort unexposed
> test-summariseCharacteristics.R: v summariseCharacteristics finished!
> test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1
> test-summariseCharacteristics.R: window names casted to snake_case:
> test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0`
> test-summariseCharacteristics.R: i summarising data
> test-summariseCharacteristics.R: i summarising cohort exposed
> test-summariseCharacteristics.R: i summarising cohort unexposed
> test-summariseCharacteristics.R: v summariseCharacteristics finished!
> test-summariseCharacteristics.R: i adding demographics columns
> test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1
> test-summariseCharacteristics.R: i summarising data
> test-summariseCharacteristics.R: i summarising cohort exposed
> test-summariseCharacteristics.R: i summarising cohort unexposed
> test-summariseCharacteristics.R: v summariseCharacteristics finished!
> test-summariseCharacteristics.R: i adding demographics columns
> test-summariseCohortOverlap.R: Cohort table is empty: returning empty summarised result.
> test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1
> test-summariseCharacteristics.R: i summarising data
> test-summariseCharacteristics.R: i summarising cohort exposed
> test-summariseCharacteristics.R: i summarising cohort unexposed
> test-summariseCharacteristics.R: v summariseCharacteristics finished!
> test-summariseCharacteristics.R: i adding demographics columns
> test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1
> test-summariseCharacteristics.R: i summarising data
> test-summariseCharacteristics.R: i summarising cohort exposed
> test-summariseCharacteristics.R: i summarising cohort unexposed
> test-summariseCharacteristics.R: v summariseCharacteristics finished!
> test-summariseCharacteristics.R: i adding demographics columns
> test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/2
> test-summariseCharacteristics.R: window names casted to snake_case:
> test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0`
> test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/2
> test-summariseCharacteristics.R: window names casted to snake_case:
> test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0`
> test-summariseCharacteristics.R: i summarising data
> test-summariseCharacteristics.R: i summarising cohort cohort_1
> test-summariseCharacteristics.R: i summarising cohort cohort_2
> test-summariseCharacteristics.R: i summarising cohort cohort_3
> test-summariseCharacteristics.R: v summariseCharacteristics finished!
> test-summariseCharacteristics.R: i adding demographics columns
> test-summariseCharacteristics.R: i adding tableIntersectFlag 1/1
> test-summariseCharacteristics.R: window names casted to snake_case:
> test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0`
> test-summariseCharacteristics.R: i summarising data
> test-summariseCharacteristics.R: i summarising cohort cohort_1
> test-summariseCharacteristics.R: i summarising cohort cohort_2
> test-summariseCharacteristics.R: i summarising cohort cohort_3
> test-summariseCharacteristics.R: v summariseCharacteristics finished!
> test-summariseCharacteristics.R: i adding demographics columns
> test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/2
> test-summariseCharacteristics.R: window names casted to snake_case:
> test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0`
> test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/2
> test-summariseCharacteristics.R: window names casted to snake_case:
> test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0`
> test-summariseCharacteristics.R: i summarising data
> test-summariseCharacteristics.R: i summarising cohort exposed
> test-summariseCohortOverlap.R: `result_id` is not present in result.
> test-summariseCharacteristics.R: v summariseCharacteristics finished!
> test-summariseCohortOverlap.R: `result_id` is not present in result.
> test-summariseCharacteristics.R: i adding demographics columns
> test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/2
> test-summariseCharacteristics.R: window names casted to snake_case:
> test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0`
> test-summariseCohortOverlap.R: `result_id` is not present in result.
> test-summariseCohortOverlap.R: `result_id` is not present in result.
> test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/2
> test-summariseCharacteristics.R: window names casted to snake_case:
> test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0`
> test-summariseCohortOverlap.R: `result_id` is not present in result.
> test-summariseCharacteristics.R: i summarising data
> test-summariseCharacteristics.R: i summarising cohort exposed
> test-summariseCharacteristics.R: i summarising cohort unexposed
> test-summariseCharacteristics.R: v summariseCharacteristics finished!
> test-summariseCohortTiming.R: Cohort table is empty: returning empty summarised timing result.
> test-summariseCohortTiming.R: i The following estimates will be calculated:
> test-summariseCohortTiming.R: * days_between_cohort_entries: min, q25, median, q75, max, density
> test-summariseCohortTiming.R: ! Table is collected to memory as not all requested estimates are supported on the database side
> test-summariseCohortTiming.R: > Start summary of data, at 2026-03-15 19:07:26.86481
> test-summariseCohortTiming.R: v Summary finished, at 2026-03-15 19:07:28.218159
> test-summariseCharacteristics.R: i adding demographics columns
> test-summariseCharacteristics.R: i adding tableIntersectCount 1/1
> test-summariseCharacteristics.R: window names casted to snake_case:
> test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1`
> test-summariseCharacteristics.R: i summarising data
> test-summariseCharacteristics.R: i summarising cohort exposed
> test-summariseCharacteristics.R: i summarising cohort unexposed
> test-summariseCohortTiming.R: i The following estimates will be calculated:
> test-summariseCohortTiming.R: * days_between_cohort_entries: min, q25, median, q75, max
> test-summariseCohortTiming.R: ! Table is collected to memory as not all requested estimates are supported on the database side
> test-summariseCohortTiming.R: > Start summary of data, at 2026-03-15 19:07:51.705817
> test-summariseCohortTiming.R: v Summary finished, at 2026-03-15 19:07:53.666439
> test-summariseCharacteristics.R: v summariseCharacteristics finished!
> test-summariseCharacteristics.R: i adding demographics columns
Saving _problems/test-summariseCohortTiming-63.R
> test-utilities.R: `group` is not present in settings.
> test-utilities.R: `group` is not present in settings.
> test-utilities.R: `group` is not present in settings.
> test-summariseCharacteristics.R: i adding tableIntersectFlag 1/1
> test-summariseCharacteristics.R: window names casted to snake_case:
> test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1`
> test-summariseCharacteristics.R: i summarising data
> test-summariseCharacteristics.R: i summarising cohort exposed
> test-summariseCharacteristics.R: i summarising cohort unexposed
> test-summariseCharacteristics.R: v summariseCharacteristics finished!
> test-summariseCharacteristics.R: i adding demographics columns
> test-summariseCharacteristics.R: i adding tableIntersectDate 1/1
> test-summariseCharacteristics.R: window names casted to snake_case:
> test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1`
> test-summariseCharacteristics.R: i summarising data
> test-summariseCharacteristics.R: i summarising cohort exposed
> test-summariseCharacteristics.R: i summarising cohort unexposed
> test-summariseCharacteristics.R: v summariseCharacteristics finished!
> test-summariseCharacteristics.R: i adding demographics columns
> test-summariseCharacteristics.R: i adding tableIntersectDays 1/1
> test-summariseCharacteristics.R: window names casted to snake_case:
> test-summariseCharacteristics.R: * `1 to Inf` -> `1_to_inf`
> test-summariseCharacteristics.R: i summarising data
> test-summariseCharacteristics.R: i summarising cohort exposed
> test-summariseCharacteristics.R: i summarising cohort unexposed
> test-summariseCharacteristics.R: v summariseCharacteristics finished!
> test-summariseCharacteristics.R: i adding demographics columns
> test-summariseCharacteristics.R: i adding cohortIntersectCount 1/1
> test-summariseCharacteristics.R: window names casted to snake_case:
> test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1`
> test-summariseCharacteristics.R: i summarising data
> test-summariseCharacteristics.R: i summarising cohort cohort_1
> test-summariseCharacteristics.R: v summariseCharacteristics finished!
> test-summariseCharacteristics.R: i adding demographics columns
> test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1
> test-summariseCharacteristics.R: window names casted to snake_case:
> test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1`
> test-summariseCharacteristics.R: i summarising data
> test-summariseCharacteristics.R: i summarising cohort cohort_1
> test-summariseCharacteristics.R: v summariseCharacteristics finished!
> test-summariseCharacteristics.R: i adding demographics columns
> test-summariseCharacteristics.R: i adding cohortIntersectDate 1/1
> test-summariseCharacteristics.R: window names casted to snake_case:
> test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1`
> test-summariseCharacteristics.R: i summarising data
> test-summariseCharacteristics.R: i summarising cohort cohort_1
> test-summariseCharacteristics.R: v summariseCharacteristics finished!
> test-summariseCharacteristics.R: i adding demographics columns
> test-summariseCharacteristics.R: i adding cohortIntersectDays 1/1
> test-summariseCharacteristics.R: window names casted to snake_case:
> test-summariseCharacteristics.R: * `1 to Inf` -> `1_to_inf`
> test-summariseCharacteristics.R: i summarising data
> test-summariseCharacteristics.R: i summarising cohort cohort_1
> test-summariseCharacteristics.R: v summariseCharacteristics finished!
> test-summariseCharacteristics.R: i adding demographics columns
> test-summariseCharacteristics.R: i summarising data
> test-summariseCharacteristics.R: i summarising cohort cohort_1
> test-summariseCharacteristics.R: v summariseCharacteristics finished!
> test-summariseCharacteristics.R: i adding demographics columns
> test-summariseCharacteristics.R: i summarising data
> test-summariseCharacteristics.R: i summarising cohort cohort_1
> test-summariseCharacteristics.R: v summariseCharacteristics finished!
> test-summariseCharacteristics.R: i adding demographics columns
> test-summariseCharacteristics.R: i summarising data
> test-summariseCharacteristics.R: i summarising cohort cohort_1
> test-summariseCharacteristics.R: v summariseCharacteristics finished!
> test-summariseCharacteristics.R: i adding demographics columns
> test-summariseCharacteristics.R: i summarising data
> test-summariseCharacteristics.R: i summarising cohort cohort_1
> test-summariseCharacteristics.R: v summariseCharacteristics finished!
> test-summariseCharacteristics.R: i adding demographics columns
> test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1
> test-summariseCharacteristics.R: window names casted to snake_case:
> test-summariseCharacteristics.R: * `-365 to -1` -> `365_to_1`
> test-summariseCharacteristics.R: i summarising data
> test-summariseCharacteristics.R: i summarising cohort cohort_1
> test-summariseCharacteristics.R: i summarising cohort cohort_2
> test-summariseCharacteristics.R: v summariseCharacteristics finished!
> test-summariseCharacteristics.R: i adding demographics columns
> test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1
> test-summariseCharacteristics.R: window names casted to snake_case:
> test-summariseCharacteristics.R: * `-365 to -1` -> `365_to_1`
> test-summariseCharacteristics.R: i summarising data
> test-summariseCharacteristics.R: i summarising cohort cohort_1
> test-summariseCharacteristics.R: i summarising cohort cohort_2
> test-summariseCharacteristics.R: v summariseCharacteristics finished!
[ FAIL 2 | WARN 16 | SKIP 24 | PASS 218 ]
══ Skipped tests (24) ══════════════════════════════════════════════════════════
• On CRAN (22): 'test-benchmarkCohortCharacteristics.R:2:3',
'test-plotCharacteristics.R:2:3', 'test-plotCharacteristics.R:176:3',
'test-plotCohortCount.R:2:3', 'test-plotCohortOverlap.R:2:3',
'test-plotCohortTiming.R:2:3', 'test-plotCohortTiming.R:100:3',
'test-plotLargeScaleCharacteristics.R:3:3',
'test-summariseCohortCount.R:2:3',
'test-summariseLargeScaleCharacteristics.R:2:3', 'test-table.R:2:3',
'test-tableCharacteristics.R:2:3', 'test-tableCharacteristics.R:124:3',
'test-tableCohortAttrition.R:2:3', 'test-tableCohortCount.R:2:3',
'test-tableCohortOverlap.R:2:3', 'test-tableCohortTiming.R:2:3',
'test-tableLargeScaleCharacteristics.R:2:3',
'test-tableLargeScaleCharacteristics.R:80:3',
'test-summariseCharacteristics.R:1180:3',
'test-summariseCharacteristics.R:1425:3',
'test-summariseCharacteristics.R:1552:3'
• empty test (2): 'test-plotLargeScaleCharacteristics.R:140:1',
'test-summariseCohortTiming.R:114:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-plotCohortTiming.R:245:3'): plotCohortTiming, density x axis ───
Error in `dplyr::collect(x)`: Failed to collect lazy table.
Caused by error in `dbSendQuery()`:
! INTERNAL Error: Failed to bind column reference "cohort_start_date_comparator" [24.0]: inequal types (DATE != INTEGER)
Stack Trace:
/data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::InternalException::InternalException(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&)+0x34) [0x7fa56e474004]
/data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::InternalException::InternalException<std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, unsigned long&, unsigned long&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > >(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, unsigned long&, unsigned long&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >&&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >&&)+0xa6) [0x7fa56e81ef26]
/data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitReplace(duckdb::BoundColumnRefExpression&, duckdb::unique_ptr<duckdb::Expression, std::__1::default_delete<duckdb::Expression>, true>*)+0x298) [0x7fa56e801748]
/data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitExpression(duckdb::unique_ptr<duckdb::Expression, std::__1::default_delete<duckdb::Expression>, true>*)+0x1c7) [0x7fa56f35cbd7]
/data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::EnumerateExpressions(duckdb::LogicalOperator&, std::__1::function<void (duckdb::unique_ptr<duckdb::Expression, std::__1::default_delete<duckdb::Expression>, true>*)> const&)+0x6fb) [0x7fa56f35c89b]
/data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorExpressions(duckdb::LogicalOperator&)+0x2a) [0x7fa56f35b89a]
/data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x7c0) [0x7fa56e801220]
/data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0xe6) [0x7fa56e800b46]
/data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x54) [0x7fa56f35b834]
/data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x7b5) [0x7fa56e801215]
/data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x54) [0x7fa56f35b834]
/data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x7b5) [0x7fa56e801215]
/data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x54) [0x7fa56f35b834]
/data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x7b5) [0x7fa56e801215]
/data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::PhysicalPlanGenerator::ResolveAndPlan(duckdb::unique_ptr<duckdb::LogicalOperator, std::__1::default_delete<duckdb::LogicalOperator>, true>)+0x75) [0x7fa56e815d95]
/data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::PhysicalPlanGenerator::Plan(duckdb::unique_ptr<duckdb::LogicalOperator, std::__1::default_delete<duckdb::LogicalOperator>, true>)+0x2b) [0x7fa56e815cab]
/data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ClientContext::CreatePreparedStatementInternal(duckdb::ClientContextLock&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, duckdb::unique_ptr<duckdb::SQLStatement, std::__1::default_delete<duckdb::SQLStatement>, true>, duckdb::PendingQueryParameters)+0x655) [0x7fa56f099ac5]
/data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ClientContext::CreatePreparedStatement(duckdb::ClientContextLock&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, duckdb::unique_ptr<duckdb::SQLStatement, std::__1::default_delete<duckdb::SQLStatement>, true>, duckdb::PendingQueryParameters, duckdb::PreparedStatementMode)+0x40b) [0x7fa56f09a79b]
/data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(+0x1907790) [0x7fa56f107790]
/data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ClientContext::RunFunctionInTransactionInternal(duckdb::ClientContextLock&, std::__1::function<void ()> const&, bool)+0x8a) [0x7fa56f09cc3a]
/data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ClientContext::PrepareInternal(duckdb::ClientContextLock&, duckdb::unique_ptr<duckdb::SQLStatement, std::__1::default_delete<duckdb::SQLStatement>, true>)+0x172) [0x7fa56f09d002]
/data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ClientContext::Prepare(duckdb::unique_ptr<duckdb::SQLStatement, std::__1::default_delete<duckdb::SQLStatement>, true>)+0xbc) [0x7fa56f09d3ec]
/data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::Connection::Prepare(duckdb::unique_ptr<duckdb::SQLStatement, std::__1::default_delete<duckdb::SQLStatement>, true>)+0x2e) [0x7fa56f0ad77e]
/data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(rapi_prepare(cpp11::external_pointer<duckdb::ConnWrapper, &duckdb::ConnDeleter>, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >, cpp11::environment)+0x5bc) [0x7fa56d90535c]
/data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(_duckdb_rapi_prepare+0x106) [0x7fa56d96f6c6]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0x8f513) [0x55930b9ba513]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xda008) [0x55930ba05008]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xc815c) [0x55930b9f315c]
/data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55930b9f28e5]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xc83b4) [0x55930b9f33b4]
/data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x26e) [0x55930b9f29ae]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xc83b4) [0x55930b9f33b4]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xdc110) [0x55930ba07110]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xcc7e9) [0x55930b9f77e9]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xc815c) [0x55930b9f315c]
/data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55930b9f28e5]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xdf979) [0x55930ba0a979]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xdee7c) [0x55930ba09e7c]
/data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x5f6) [0x55930b9f2d36]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xc83b4) [0x55930b9f33b4]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xdc110) [0x55930ba07110]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xcc7e9) [0x55930b9f77e9]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xc815c) [0x55930b9f315c]
/data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55930b9f28e5]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xdf979) [0x55930ba0a979]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xdee7c) [0x55930ba09e7c]
/data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x5f6) [0x55930b9f2d36]
/data/gannet/ripley/R/test-clang/rlang/libs/rlang.so(+0x47d3) [0x7fa5802b77d3]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0x8d4d3) [0x55930b9b84d3]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xcedd4) [0x55930b9f9dd4]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xc815c) [0x55930b9f315c]
/data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55930b9f28e5]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xdf979) [0x55930ba0a979]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xdee7c) [0x55930ba09e7c]
/data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x5f6) [0x55930b9f2d36]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xe4ea8) [0x55930ba0fea8]
/data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x3d0) [0x55930b9f2b10]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xe3feb) [0x55930ba0efeb]
/data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x3d0) [0x55930b9f2b10]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xdf979) [0x55930ba0a979]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xdee7c) [0x55930ba09e7c]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xce663) [0x55930b9f9663]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xc815c) [0x55930b9f315c]
/data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55930b9f28e5]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xdf979) [0x55930ba0a979]
/data/gannet/ripley/R/R-clang/bin/exec/R(R_execMethod+0x2cb) [0x55930ba0d78b]
/data/gannet/ripley/R/R-clang/library/methods/libs/methods.so(+0x175b) [0x7fa582b8275b]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0x12e5da) [0x55930ba595da]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xce5e3) [0x55930b9f95e3]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xc815c) [0x55930b9f315c]
/data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55930b9f28e5]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xdf979) [0x55930ba0a979]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xdee7c) [0x55930ba09e7c]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xc8a86) [0x55930b9f3a86]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0x12bae2) [0x55930ba56ae2]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0x12b405) [0x55930ba56405]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0x12c03e) [0x55930ba5703e]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xcf036) [0x55930b9fa036]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xc815c) [0x55930b9f315c]
/data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55930b9f28e5]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xdf979) [0x55930ba0a979]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xdee7c) [0x55930ba09e7c]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xc8a86) [0x55930b9f3a86]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0x12bae2) [0x55930ba56ae2]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0x12b405) [0x55930ba56405]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0x12c03e) [0x55930ba5703e]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xcf036) [0x55930b9fa036]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xc815c) [0x55930b9f315c]
/data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55930b9f28e5]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xdf979) [0x55930ba0a979]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xdee7c) [0x55930ba09e7c]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xc8a86) [0x55930b9f3a86]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0x12bae2) [0x55930ba56ae2]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0x12b509) [0x55930ba56509]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0x12c03e) [0x55930ba5703e]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xcf036) [0x55930b9fa036]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xc815c) [0x55930b9f315c]
/data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55930b9f28e5]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xdf979) [0x55930ba0a979]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xdee7c) [0x55930ba09e7c]
/data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x5f6) [0x55930b9f2d36]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xe4ea8) [0x55930ba0fea8]
/data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x3d0) [0x55930b9f2b10]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xe3feb) [0x55930ba0efeb]
/data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x3d0) [0x55930b9f2b10]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xe6318) [0x55930ba11318]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xcedd4) [0x55930b9f9dd4]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xc815c) [0x55930b9f315c]
/data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55930b9f28e5]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xdf979) [0x55930ba0a979]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xdee7c) [0x55930ba09e7c]
/data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x5f6) [0x55930b9f2d36]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xe66f8) [0x55930ba116f8]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xcedd4) [0x55930b9f9dd4]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xc815c) [0x55930b9f315c]
/data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55930b9f28e5]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xdf979) [0x55930ba0a979]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xdee7c) [0x55930ba09e7c]
This error signals an assertion failure within DuckDB. This usually occurs due to unexpected conditions or errors in the program's logic.
For more information, see https://duckdb.org/docs/stable/dev/internal_errors
i Context: rapi_prepare
i Error type: INTERNAL
── Error ('test-summariseCohortTiming.R:60:3'): summariseCohortTiming ──────────
Error in `dplyr::collect(x)`: Failed to collect lazy table.
Caused by error in `dbSendQuery()`:
! INTERNAL Error: Failed to bind column reference "cohort_start_date_comparator" [24.0]: inequal types (DATE != INTEGER)
Stack Trace:
/data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::InternalException::InternalException(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&)+0x34) [0x7fa56e474004]
/data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::InternalException::InternalException<std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, unsigned long&, unsigned long&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > >(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, unsigned long&, unsigned long&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >&&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >&&)+0xa6) [0x7fa56e81ef26]
/data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitReplace(duckdb::BoundColumnRefExpression&, duckdb::unique_ptr<duckdb::Expression, std::__1::default_delete<duckdb::Expression>, true>*)+0x298) [0x7fa56e801748]
/data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitExpression(duckdb::unique_ptr<duckdb::Expression, std::__1::default_delete<duckdb::Expression>, true>*)+0x1c7) [0x7fa56f35cbd7]
/data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::EnumerateExpressions(duckdb::LogicalOperator&, std::__1::function<void (duckdb::unique_ptr<duckdb::Expression, std::__1::default_delete<duckdb::Expression>, true>*)> const&)+0x6fb) [0x7fa56f35c89b]
/data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorExpressions(duckdb::LogicalOperator&)+0x2a) [0x7fa56f35b89a]
/data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x7c0) [0x7fa56e801220]
/data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0xe6) [0x7fa56e800b46]
/data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x54) [0x7fa56f35b834]
/data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x7b5) [0x7fa56e801215]
/data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x54) [0x7fa56f35b834]
/data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x7b5) [0x7fa56e801215]
/data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x54) [0x7fa56f35b834]
/data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x7b5) [0x7fa56e801215]
/data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::PhysicalPlanGenerator::ResolveAndPlan(duckdb::unique_ptr<duckdb::LogicalOperator, std::__1::default_delete<duckdb::LogicalOperator>, true>)+0x75) [0x7fa56e815d95]
/data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::PhysicalPlanGenerator::Plan(duckdb::unique_ptr<duckdb::LogicalOperator, std::__1::default_delete<duckdb::LogicalOperator>, true>)+0x2b) [0x7fa56e815cab]
/data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ClientContext::CreatePreparedStatementInternal(duckdb::ClientContextLock&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, duckdb::unique_ptr<duckdb::SQLStatement, std::__1::default_delete<duckdb::SQLStatement>, true>, duckdb::PendingQueryParameters)+0x655) [0x7fa56f099ac5]
/data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ClientContext::CreatePreparedStatement(duckdb::ClientContextLock&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, duckdb::unique_ptr<duckdb::SQLStatement, std::__1::default_delete<duckdb::SQLStatement>, true>, duckdb::PendingQueryParameters, duckdb::PreparedStatementMode)+0x40b) [0x7fa56f09a79b]
/data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(+0x1907790) [0x7fa56f107790]
/data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ClientContext::RunFunctionInTransactionInternal(duckdb::ClientContextLock&, std::__1::function<void ()> const&, bool)+0x8a) [0x7fa56f09cc3a]
/data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ClientContext::PrepareInternal(duckdb::ClientContextLock&, duckdb::unique_ptr<duckdb::SQLStatement, std::__1::default_delete<duckdb::SQLStatement>, true>)+0x172) [0x7fa56f09d002]
/data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ClientContext::Prepare(duckdb::unique_ptr<duckdb::SQLStatement, std::__1::default_delete<duckdb::SQLStatement>, true>)+0xbc) [0x7fa56f09d3ec]
/data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::Connection::Prepare(duckdb::unique_ptr<duckdb::SQLStatement, std::__1::default_delete<duckdb::SQLStatement>, true>)+0x2e) [0x7fa56f0ad77e]
/data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(rapi_prepare(cpp11::external_pointer<duckdb::ConnWrapper, &duckdb::ConnDeleter>, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >, cpp11::environment)+0x5bc) [0x7fa56d90535c]
/data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(_duckdb_rapi_prepare+0x106) [0x7fa56d96f6c6]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0x8f513) [0x55930b9ba513]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xda008) [0x55930ba05008]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xc815c) [0x55930b9f315c]
/data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55930b9f28e5]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xc83b4) [0x55930b9f33b4]
/data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x26e) [0x55930b9f29ae]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xc83b4) [0x55930b9f33b4]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xdc110) [0x55930ba07110]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xcc7e9) [0x55930b9f77e9]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xc815c) [0x55930b9f315c]
/data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55930b9f28e5]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xdf979) [0x55930ba0a979]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xdee7c) [0x55930ba09e7c]
/data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x5f6) [0x55930b9f2d36]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xc83b4) [0x55930b9f33b4]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xdc110) [0x55930ba07110]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xcc7e9) [0x55930b9f77e9]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xc815c) [0x55930b9f315c]
/data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55930b9f28e5]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xdf979) [0x55930ba0a979]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xdee7c) [0x55930ba09e7c]
/data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x5f6) [0x55930b9f2d36]
/data/gannet/ripley/R/test-clang/rlang/libs/rlang.so(+0x47d3) [0x7fa5802b77d3]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0x8d4d3) [0x55930b9b84d3]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xcedd4) [0x55930b9f9dd4]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xc815c) [0x55930b9f315c]
/data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55930b9f28e5]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xdf979) [0x55930ba0a979]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xdee7c) [0x55930ba09e7c]
/data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x5f6) [0x55930b9f2d36]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xe4ea8) [0x55930ba0fea8]
/data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x3d0) [0x55930b9f2b10]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xe3feb) [0x55930ba0efeb]
/data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x3d0) [0x55930b9f2b10]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xdf979) [0x55930ba0a979]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xdee7c) [0x55930ba09e7c]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xce663) [0x55930b9f9663]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xc815c) [0x55930b9f315c]
/data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55930b9f28e5]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xdf979) [0x55930ba0a979]
/data/gannet/ripley/R/R-clang/bin/exec/R(R_execMethod+0x2cb) [0x55930ba0d78b]
/data/gannet/ripley/R/R-clang/library/methods/libs/methods.so(+0x175b) [0x7fa582b8275b]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0x12e5da) [0x55930ba595da]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xce5e3) [0x55930b9f95e3]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xc815c) [0x55930b9f315c]
/data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55930b9f28e5]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xdf979) [0x55930ba0a979]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xdee7c) [0x55930ba09e7c]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xc8a86) [0x55930b9f3a86]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0x12bae2) [0x55930ba56ae2]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0x12b405) [0x55930ba56405]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0x12c03e) [0x55930ba5703e]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xcf036) [0x55930b9fa036]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xc815c) [0x55930b9f315c]
/data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55930b9f28e5]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xdf979) [0x55930ba0a979]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xdee7c) [0x55930ba09e7c]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xc8a86) [0x55930b9f3a86]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0x12bae2) [0x55930ba56ae2]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0x12b405) [0x55930ba56405]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0x12c03e) [0x55930ba5703e]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xcf036) [0x55930b9fa036]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xc815c) [0x55930b9f315c]
/data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55930b9f28e5]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xdf979) [0x55930ba0a979]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xdee7c) [0x55930ba09e7c]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xc8a86) [0x55930b9f3a86]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0x12bae2) [0x55930ba56ae2]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0x12b509) [0x55930ba56509]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0x12c03e) [0x55930ba5703e]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xcf036) [0x55930b9fa036]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xc815c) [0x55930b9f315c]
/data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55930b9f28e5]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xdf979) [0x55930ba0a979]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xdee7c) [0x55930ba09e7c]
/data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x5f6) [0x55930b9f2d36]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xe4ea8) [0x55930ba0fea8]
/data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x3d0) [0x55930b9f2b10]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xe3feb) [0x55930ba0efeb]
/data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x3d0) [0x55930b9f2b10]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xe6318) [0x55930ba11318]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xcedd4) [0x55930b9f9dd4]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xc815c) [0x55930b9f315c]
/data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55930b9f28e5]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xdf979) [0x55930ba0a979]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xdee7c) [0x55930ba09e7c]
/data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x5f6) [0x55930b9f2d36]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xe66f8) [0x55930ba116f8]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xcedd4) [0x55930b9f9dd4]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xc815c) [0x55930b9f315c]
/data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55930b9f28e5]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xdf979) [0x55930ba0a979]
/data/gannet/ripley/R/R-clang/bin/exec/R(+0xdee7c) [0x55930ba09e7c]
This error signals an assertion failure within DuckDB. This usually occurs due to unexpected conditions or errors in the program's logic.
For more information, see https://duckdb.org/docs/stable/dev/internal_errors
i Context: rapi_prepare
i Error type: INTERNAL
[ FAIL 2 | WARN 16 | SKIP 24 | PASS 218 ]
Error:
! Test failures.
Execution halted
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [373s/530s] OK
- checking PDF version of manual ... [8s/11s] OK
- checking HTML version of manual ... OK
- checking for non-standard things in the check directory ... OK
- checking for detritus in the temp directory ... OK
- DONE
Status: 1 ERROR