* installing *source* package ‘CaseBasedReasoning’ ...
** package ‘CaseBasedReasoning’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘clang version 18.1.2’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/CaseBasedReasoning/src'
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c RcppExports.cpp -o RcppExports.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c distanceAPI.cpp -o distanceAPI.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c distances.cpp -o distances.o
In file included from distanceAPI.cpp:1:
In file included from ./distanceAPI.h:7:
./distance/distance.h:60:17: warning: variable 'nTree' set but not used [-Wunused-but-set-variable]
60 | std::size_t nTree = 0;
| ^
distanceAPI.cpp:46:7: warning: unused variable 'ncols' [-Wunused-variable]
46 | int ncols = y.n_rows;
| ^~~~~
In file included from distances.cpp:4:
In file included from ./distanceAPI.h:7:
./distance/distance.h:60:17: warning: variable 'nTree' set but not used [-Wunused-but-set-variable]
60 | std::size_t nTree = 0;
| ^
In file included from distanceAPI.cpp:1:
In file included from ./distanceAPI.h:5:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:30:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/r/headers.h:62:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/platform/compiler.h:153:
In file included from /usr/local/clang18/bin/../include/c++/v1/unordered_map:598:
/usr/local/clang18/bin/../include/c++/v1/__memory/allocator.h:176:81: warning: destructor called on non-final 'rangerProximity' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
176 | _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_HIDE_FROM_ABI void destroy(pointer __p) { __p->~_Tp(); }
| ^
/usr/local/clang18/bin/../include/c++/v1/__memory/allocator_traits.h:311:9: note: in instantiation of member function 'std::allocator<rangerProximity>::destroy' requested here
311 | __a.destroy(__p);
| ^
/usr/local/clang18/bin/../include/c++/v1/__memory/shared_ptr.h:284:33: note: in instantiation of function template specialization 'std::allocator_traits<std::allocator<rangerProximity>>::destroy<rangerProximity, void>' requested here
284 | allocator_traits<_TpAlloc>::destroy(__tmp, __get_elem());
| ^
/usr/local/clang18/bin/../include/c++/v1/__memory/shared_ptr.h:287:78: note: in instantiation of function template specialization 'std::__shared_ptr_emplace<rangerProximity, std::allocator<rangerProximity>>::__on_zero_shared_impl<std::allocator<rangerProximity>, 0>' requested here
287 | _LIBCPP_HIDE_FROM_ABI_VIRTUAL void __on_zero_shared() _NOEXCEPT override { __on_zero_shared_impl(); }
| ^
/usr/local/clang18/bin/../include/c++/v1/__memory/shared_ptr.h:262:34: note: in instantiation of member function 'std::__shared_ptr_emplace<rangerProximity, std::allocator<rangerProximity>>::__on_zero_shared' requested here
262 | _LIBCPP_HIDE_FROM_ABI explicit __shared_ptr_emplace(_Alloc __a, _Args&&... __args) : __storage_(std::move(__a)) {
| ^
/usr/local/clang18/bin/../include/c++/v1/__memory/shared_ptr.h:823:51: note: in instantiation of function template specialization 'std::__shared_ptr_emplace<rangerProximity, std::allocator<rangerProximity>>::__shared_ptr_emplace<rangerProximity &, std::allocator<rangerProximity>, 0>' requested here
823 | ::new ((void*)std::addressof(*__guard.__get())) _ControlBlock(__a, std::forward<_Args>(__args)...);
| ^
/usr/local/clang18/bin/../include/c++/v1/__memory/shared_ptr.h:831:15: note: in instantiation of function template specialization 'std::allocate_shared<rangerProximity, std::allocator<rangerProximity>, rangerProximity &, void>' requested here
831 | return std::allocate_shared<_Tp>(allocator<_Tp>(), std::forward<_Args>(__args)...);
| ^
distanceAPI.cpp:73:16: note: in instantiation of function template specialization 'std::make_shared<rangerProximity, rangerProximity &, void>' requested here
73 | dist_ = std::make_shared<rangerProximity>(dist);
| ^
/usr/local/clang18/bin/../include/c++/v1/__memory/allocator.h:176:87: note: qualify call to silence this warning
176 | _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_HIDE_FROM_ABI void destroy(pointer __p) { __p->~_Tp(); }
| ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c order.cpp -o order.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c weightedKNN.cpp -o weightedKNN.o
3 warnings generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o CaseBasedReasoning.so RcppExports.o distanceAPI.o distances.o order.o weightedKNN.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/CaseBasedReasoning/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/CaseBasedReasoning/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/CaseBasedReasoning/src'
installing to /data/gannet/ripley/R/packages/tests-clang/CaseBasedReasoning.Rcheck/00LOCK-CaseBasedReasoning/00new/CaseBasedReasoning/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (CaseBasedReasoning)