* installing *source* package ‘CLVTools’ ...
** this is package ‘CLVTools’ version ‘0.12.1’
** package ‘CLVTools’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘clang version 22.1.0 (https://github.com/llvm/llvm-project 4434dabb69916856b824f68a64b029c67175e532)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/CLVTools/src'
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG `/data/gannet/ripley/R/R-clang/bin/Rscript -e "RcppGSL:::CFlags()"` -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppGSL/include' -I'/data/gannet/ripley/R/test-clang/testthat/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c RcppExports.cpp -o RcppExports.o
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG `/data/gannet/ripley/R/R-clang/bin/Rscript -e "RcppGSL:::CFlags()"` -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppGSL/include' -I'/data/gannet/ripley/R/test-clang/testthat/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c bgnbd.cpp -o bgnbd.o
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG `/data/gannet/ripley/R/R-clang/bin/Rscript -e "RcppGSL:::CFlags()"` -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppGSL/include' -I'/data/gannet/ripley/R/test-clang/testthat/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c clv_vectorized.cpp -o clv_vectorized.o
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG `/data/gannet/ripley/R/R-clang/bin/Rscript -e "RcppGSL:::CFlags()"` -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppGSL/include' -I'/data/gannet/ripley/R/test-clang/testthat/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c gg_LL.cpp -o gg_LL.o
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG `/data/gannet/ripley/R/R-clang/bin/Rscript -e "RcppGSL:::CFlags()"` -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppGSL/include' -I'/data/gannet/ripley/R/test-clang/testthat/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c ggomnbd.cpp -o ggomnbd.o
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG `/data/gannet/ripley/R/R-clang/bin/Rscript -e "RcppGSL:::CFlags()"` -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppGSL/include' -I'/data/gannet/ripley/R/test-clang/testthat/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c pnbd.cpp -o pnbd.o
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG `/data/gannet/ripley/R/R-clang/bin/Rscript -e "RcppGSL:::CFlags()"` -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppGSL/include' -I'/data/gannet/ripley/R/test-clang/testthat/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c pnbd_dyncov_LL.cpp -o pnbd_dyncov_LL.o
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG `/data/gannet/ripley/R/R-clang/bin/Rscript -e "RcppGSL:::CFlags()"` -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppGSL/include' -I'/data/gannet/ripley/R/test-clang/testthat/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c test-cpp.cpp -o test-cpp.o
test-cpp.cpp:27:1: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
27 | context("Bi() vs excel") {
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/testthat.h:180:25: note: expanded from macro 'context'
180 | # define context(__X__) CATCH_TEST_CASE(__X__ " | " __FILE__)
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:11403:36: note: expanded from macro 'CATCH_TEST_CASE'
11403 | #define CATCH_TEST_CASE( ... ) INTERNAL_CATCH_TESTCASE( __VA_ARGS__ )
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:787:35: note: expanded from macro 'INTERNAL_CATCH_TESTCASE'
787 | INTERNAL_CATCH_TESTCASE2( INTERNAL_CATCH_UNIQUE_NAME( ____C_A_T_C_H____T_E_S_T____ ), __VA_ARGS__ )
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
test-cpp.cpp:27:1: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
/data/gannet/ripley/R/test-clang/testthat/include/testthat/testthat.h:180:25: note: expanded from macro 'context'
180 | # define context(__X__) CATCH_TEST_CASE(__X__ " | " __FILE__)
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:11403:36: note: expanded from macro 'CATCH_TEST_CASE'
11403 | #define CATCH_TEST_CASE( ... ) INTERNAL_CATCH_TESTCASE( __VA_ARGS__ )
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:787:9: note: expanded from macro 'INTERNAL_CATCH_TESTCASE'
787 | INTERNAL_CATCH_TESTCASE2( INTERNAL_CATCH_UNIQUE_NAME( ____C_A_T_C_H____T_E_S_T____ ), __VA_ARGS__ )
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:783:35: note: expanded from macro 'INTERNAL_CATCH_TESTCASE2'
783 | namespace{ Catch::AutoReg INTERNAL_CATCH_UNIQUE_NAME( autoRegistrar )( &TestName, CATCH_INTERNAL_LINEINFO, Catch::NameAndDesc( __VA_ARGS__ ) ); } \
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
test-cpp.cpp:32:3: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
32 | test_that("Bi() vs excel, walk length 6"){
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/testthat.h:181:20: note: expanded from macro 'test_that'
181 | # define test_that CATCH_SECTION
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:11407:34: note: expanded from macro 'CATCH_SECTION'
11407 | #define CATCH_SECTION( ... ) INTERNAL_CATCH_SECTION( __VA_ARGS__ )
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:2479:35: note: expanded from macro 'INTERNAL_CATCH_SECTION'
2479 | if( Catch::Section const& INTERNAL_CATCH_UNIQUE_NAME( catch_internal_Section ) = Catch::SectionInfo( CATCH_INTERNAL_LINEINFO, __VA_ARGS__ ) )
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
test-cpp.cpp:43:3: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
43 | test_that("Bi() vs excel, walk length 5"){
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/testthat.h:181:20: note: expanded from macro 'test_that'
181 | # define test_that CATCH_SECTION
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:11407:34: note: expanded from macro 'CATCH_SECTION'
11407 | #define CATCH_SECTION( ... ) INTERNAL_CATCH_SECTION( __VA_ARGS__ )
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:2479:35: note: expanded from macro 'INTERNAL_CATCH_SECTION'
2479 | if( Catch::Section const& INTERNAL_CATCH_UNIQUE_NAME( catch_internal_Section ) = Catch::SectionInfo( CATCH_INTERNAL_LINEINFO, __VA_ARGS__ ) )
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
test-cpp.cpp:53:3: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
53 | test_that("Bi() vs excel, walk length 4"){
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/testthat.h:181:20: note: expanded from macro 'test_that'
181 | # define test_that CATCH_SECTION
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:11407:34: note: expanded from macro 'CATCH_SECTION'
11407 | #define CATCH_SECTION( ... ) INTERNAL_CATCH_SECTION( __VA_ARGS__ )
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:2479:35: note: expanded from macro 'INTERNAL_CATCH_SECTION'
2479 | if( Catch::Section const& INTERNAL_CATCH_UNIQUE_NAME( catch_internal_Section ) = Catch::SectionInfo( CATCH_INTERNAL_LINEINFO, __VA_ARGS__ ) )
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
test-cpp.cpp:62:3: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
62 | test_that("Bi() vs excel, walk length 3"){
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/testthat.h:181:20: note: expanded from macro 'test_that'
181 | # define test_that CATCH_SECTION
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:11407:34: note: expanded from macro 'CATCH_SECTION'
11407 | #define CATCH_SECTION( ... ) INTERNAL_CATCH_SECTION( __VA_ARGS__ )
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:2479:35: note: expanded from macro 'INTERNAL_CATCH_SECTION'
2479 | if( Catch::Section const& INTERNAL_CATCH_UNIQUE_NAME( catch_internal_Section ) = Catch::SectionInfo( CATCH_INTERNAL_LINEINFO, __VA_ARGS__ ) )
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
test-cpp.cpp:70:3: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
70 | test_that("Bi() vs excel, walk length 2"){
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/testthat.h:181:20: note: expanded from macro 'test_that'
181 | # define test_that CATCH_SECTION
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:11407:34: note: expanded from macro 'CATCH_SECTION'
11407 | #define CATCH_SECTION( ... ) INTERNAL_CATCH_SECTION( __VA_ARGS__ )
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:2479:35: note: expanded from macro 'INTERNAL_CATCH_SECTION'
2479 | if( Catch::Section const& INTERNAL_CATCH_UNIQUE_NAME( catch_internal_Section ) = Catch::SectionInfo( CATCH_INTERNAL_LINEINFO, __VA_ARGS__ ) )
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
test-cpp.cpp:77:3: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
77 | test_that("Bi() vs excel, walk length 1"){
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/testthat.h:181:20: note: expanded from macro 'test_that'
181 | # define test_that CATCH_SECTION
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:11407:34: note: expanded from macro 'CATCH_SECTION'
11407 | #define CATCH_SECTION( ... ) INTERNAL_CATCH_SECTION( __VA_ARGS__ )
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:2479:35: note: expanded from macro 'INTERNAL_CATCH_SECTION'
2479 | if( Catch::Section const& INTERNAL_CATCH_UNIQUE_NAME( catch_internal_Section ) = Catch::SectionInfo( CATCH_INTERNAL_LINEINFO, __VA_ARGS__ ) )
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
test-cpp.cpp:104:1: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
104 | context("Di() vs excel") {
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/testthat.h:180:25: note: expanded from macro 'context'
180 | # define context(__X__) CATCH_TEST_CASE(__X__ " | " __FILE__)
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:11403:36: note: expanded from macro 'CATCH_TEST_CASE'
11403 | #define CATCH_TEST_CASE( ... ) INTERNAL_CATCH_TESTCASE( __VA_ARGS__ )
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:787:35: note: expanded from macro 'INTERNAL_CATCH_TESTCASE'
787 | INTERNAL_CATCH_TESTCASE2( INTERNAL_CATCH_UNIQUE_NAME( ____C_A_T_C_H____T_E_S_T____ ), __VA_ARGS__ )
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
test-cpp.cpp:104:1: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
/data/gannet/ripley/R/test-clang/testthat/include/testthat/testthat.h:180:25: note: expanded from macro 'context'
180 | # define context(__X__) CATCH_TEST_CASE(__X__ " | " __FILE__)
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:11403:36: note: expanded from macro 'CATCH_TEST_CASE'
11403 | #define CATCH_TEST_CASE( ... ) INTERNAL_CATCH_TESTCASE( __VA_ARGS__ )
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:787:9: note: expanded from macro 'INTERNAL_CATCH_TESTCASE'
787 | INTERNAL_CATCH_TESTCASE2( INTERNAL_CATCH_UNIQUE_NAME( ____C_A_T_C_H____T_E_S_T____ ), __VA_ARGS__ )
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:783:35: note: expanded from macro 'INTERNAL_CATCH_TESTCASE2'
783 | namespace{ Catch::AutoReg INTERNAL_CATCH_UNIQUE_NAME( autoRegistrar )( &TestName, CATCH_INTERNAL_LINEINFO, Catch::NameAndDesc( __VA_ARGS__ ) ); } \
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
test-cpp.cpp:106:3: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
106 | test_that("Di() vs excel, real length 0, aux length 1"){
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/testthat.h:181:20: note: expanded from macro 'test_that'
181 | # define test_that CATCH_SECTION
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:11407:34: note: expanded from macro 'CATCH_SECTION'
11407 | #define CATCH_SECTION( ... ) INTERNAL_CATCH_SECTION( __VA_ARGS__ )
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:2479:35: note: expanded from macro 'INTERNAL_CATCH_SECTION'
2479 | if( Catch::Section const& INTERNAL_CATCH_UNIQUE_NAME( catch_internal_Section ) = Catch::SectionInfo( CATCH_INTERNAL_LINEINFO, __VA_ARGS__ ) )
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
test-cpp.cpp:113:3: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
113 | test_that("Di() vs excel, real length 0, aux length 2"){
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/testthat.h:181:20: note: expanded from macro 'test_that'
181 | # define test_that CATCH_SECTION
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:11407:34: note: expanded from macro 'CATCH_SECTION'
11407 | #define CATCH_SECTION( ... ) INTERNAL_CATCH_SECTION( __VA_ARGS__ )
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:2479:35: note: expanded from macro 'INTERNAL_CATCH_SECTION'
2479 | if( Catch::Section const& INTERNAL_CATCH_UNIQUE_NAME( catch_internal_Section ) = Catch::SectionInfo( CATCH_INTERNAL_LINEINFO, __VA_ARGS__ ) )
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
test-cpp.cpp:121:3: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
121 | test_that("Di() vs excel, real length 0, aux length 3"){
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/testthat.h:181:20: note: expanded from macro 'test_that'
181 | # define test_that CATCH_SECTION
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:11407:34: note: expanded from macro 'CATCH_SECTION'
11407 | #define CATCH_SECTION( ... ) INTERNAL_CATCH_SECTION( __VA_ARGS__ )
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:2479:35: note: expanded from macro 'INTERNAL_CATCH_SECTION'
2479 | if( Catch::Section const& INTERNAL_CATCH_UNIQUE_NAME( catch_internal_Section ) = Catch::SectionInfo( CATCH_INTERNAL_LINEINFO, __VA_ARGS__ ) )
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
test-cpp.cpp:131:3: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
131 | test_that("Di() vs excel, real length 0, aux length 4"){
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/testthat.h:181:20: note: expanded from macro 'test_that'
181 | # define test_that CATCH_SECTION
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:11407:34: note: expanded from macro 'CATCH_SECTION'
11407 | #define CATCH_SECTION( ... ) INTERNAL_CATCH_SECTION( __VA_ARGS__ )
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:2479:35: note: expanded from macro 'INTERNAL_CATCH_SECTION'
2479 | if( Catch::Section const& INTERNAL_CATCH_UNIQUE_NAME( catch_internal_Section ) = Catch::SectionInfo( CATCH_INTERNAL_LINEINFO, __VA_ARGS__ ) )
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
test-cpp.cpp:141:3: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
141 | test_that("Di() vs excel, real length 1, aux length 1"){
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/testthat.h:181:20: note: expanded from macro 'test_that'
181 | # define test_that CATCH_SECTION
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:11407:34: note: expanded from macro 'CATCH_SECTION'
11407 | #define CATCH_SECTION( ... ) INTERNAL_CATCH_SECTION( __VA_ARGS__ )
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:2479:35: note: expanded from macro 'INTERNAL_CATCH_SECTION'
2479 | if( Catch::Section const& INTERNAL_CATCH_UNIQUE_NAME( catch_internal_Section ) = Catch::SectionInfo( CATCH_INTERNAL_LINEINFO, __VA_ARGS__ ) )
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
test-cpp.cpp:148:3: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
148 | test_that("Di() vs excel, real length 1, aux length 2"){
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/testthat.h:181:20: note: expanded from macro 'test_that'
181 | # define test_that CATCH_SECTION
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:11407:34: note: expanded from macro 'CATCH_SECTION'
11407 | #define CATCH_SECTION( ... ) INTERNAL_CATCH_SECTION( __VA_ARGS__ )
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:2479:35: note: expanded from macro 'INTERNAL_CATCH_SECTION'
2479 | if( Catch::Section const& INTERNAL_CATCH_UNIQUE_NAME( catch_internal_Section ) = Catch::SectionInfo( CATCH_INTERNAL_LINEINFO, __VA_ARGS__ ) )
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
test-cpp.cpp:156:3: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
156 | test_that("Di() vs excel, real length 1, aux length 3"){
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/testthat.h:181:20: note: expanded from macro 'test_that'
181 | # define test_that CATCH_SECTION
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:11407:34: note: expanded from macro 'CATCH_SECTION'
11407 | #define CATCH_SECTION( ... ) INTERNAL_CATCH_SECTION( __VA_ARGS__ )
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:2479:35: note: expanded from macro 'INTERNAL_CATCH_SECTION'
2479 | if( Catch::Section const& INTERNAL_CATCH_UNIQUE_NAME( catch_internal_Section ) = Catch::SectionInfo( CATCH_INTERNAL_LINEINFO, __VA_ARGS__ ) )
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
test-cpp.cpp:166:3: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
166 | test_that("Di() vs excel, real length 1, aux length 4"){
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/testthat.h:181:20: note: expanded from macro 'test_that'
181 | # define test_that CATCH_SECTION
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:11407:34: note: expanded from macro 'CATCH_SECTION'
11407 | #define CATCH_SECTION( ... ) INTERNAL_CATCH_SECTION( __VA_ARGS__ )
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:2479:35: note: expanded from macro 'INTERNAL_CATCH_SECTION'
2479 | if( Catch::Section const& INTERNAL_CATCH_UNIQUE_NAME( catch_internal_Section ) = Catch::SectionInfo( CATCH_INTERNAL_LINEINFO, __VA_ARGS__ ) )
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
test-cpp.cpp:176:3: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
176 | test_that("Di() vs excel, real length 2, aux length 1"){
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/testthat.h:181:20: note: expanded from macro 'test_that'
181 | # define test_that CATCH_SECTION
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:11407:34: note: expanded from macro 'CATCH_SECTION'
11407 | #define CATCH_SECTION( ... ) INTERNAL_CATCH_SECTION( __VA_ARGS__ )
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:2479:35: note: expanded from macro 'INTERNAL_CATCH_SECTION'
2479 | if( Catch::Section const& INTERNAL_CATCH_UNIQUE_NAME( catch_internal_Section ) = Catch::SectionInfo( CATCH_INTERNAL_LINEINFO, __VA_ARGS__ ) )
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
test-cpp.cpp:183:3: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
183 | test_that("Di() vs excel, real length 2, aux length 2"){
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/testthat.h:181:20: note: expanded from macro 'test_that'
181 | # define test_that CATCH_SECTION
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:11407:34: note: expanded from macro 'CATCH_SECTION'
11407 | #define CATCH_SECTION( ... ) INTERNAL_CATCH_SECTION( __VA_ARGS__ )
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:2479:35: note: expanded from macro 'INTERNAL_CATCH_SECTION'
2479 | if( Catch::Section const& INTERNAL_CATCH_UNIQUE_NAME( catch_internal_Section ) = Catch::SectionInfo( CATCH_INTERNAL_LINEINFO, __VA_ARGS__ ) )
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
test-cpp.cpp:192:3: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
192 | test_that("Di() vs excel, real length 2, aux length 3"){
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/testthat.h:181:20: note: expanded from macro 'test_that'
181 | # define test_that CATCH_SECTION
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:11407:34: note: expanded from macro 'CATCH_SECTION'
11407 | #define CATCH_SECTION( ... ) INTERNAL_CATCH_SECTION( __VA_ARGS__ )
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:2479:35: note: expanded from macro 'INTERNAL_CATCH_SECTION'
2479 | if( Catch::Section const& INTERNAL_CATCH_UNIQUE_NAME( catch_internal_Section ) = Catch::SectionInfo( CATCH_INTERNAL_LINEINFO, __VA_ARGS__ ) )
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
test-cpp.cpp:202:3: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
202 | test_that("Di() vs excel, real length 2, aux length 4"){
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/testthat.h:181:20: note: expanded from macro 'test_that'
181 | # define test_that CATCH_SECTION
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:11407:34: note: expanded from macro 'CATCH_SECTION'
11407 | #define CATCH_SECTION( ... ) INTERNAL_CATCH_SECTION( __VA_ARGS__ )
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:2479:35: note: expanded from macro 'INTERNAL_CATCH_SECTION'
2479 | if( Catch::Section const& INTERNAL_CATCH_UNIQUE_NAME( catch_internal_Section ) = Catch::SectionInfo( CATCH_INTERNAL_LINEINFO, __VA_ARGS__ ) )
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
test-cpp.cpp:217:1: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
217 | context("GGomNBD CET hyp2F1 integral representation") {
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/testthat.h:180:25: note: expanded from macro 'context'
180 | # define context(__X__) CATCH_TEST_CASE(__X__ " | " __FILE__)
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:11403:36: note: expanded from macro 'CATCH_TEST_CASE'
11403 | #define CATCH_TEST_CASE( ... ) INTERNAL_CATCH_TESTCASE( __VA_ARGS__ )
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:787:35: note: expanded from macro 'INTERNAL_CATCH_TESTCASE'
787 | INTERNAL_CATCH_TESTCASE2( INTERNAL_CATCH_UNIQUE_NAME( ____C_A_T_C_H____T_E_S_T____ ), __VA_ARGS__ )
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
test-cpp.cpp:217:1: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
/data/gannet/ripley/R/test-clang/testthat/include/testthat/testthat.h:180:25: note: expanded from macro 'context'
180 | # define context(__X__) CATCH_TEST_CASE(__X__ " | " __FILE__)
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:11403:36: note: expanded from macro 'CATCH_TEST_CASE'
11403 | #define CATCH_TEST_CASE( ... ) INTERNAL_CATCH_TESTCASE( __VA_ARGS__ )
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:787:9: note: expanded from macro 'INTERNAL_CATCH_TESTCASE'
787 | INTERNAL_CATCH_TESTCASE2( INTERNAL_CATCH_UNIQUE_NAME( ____C_A_T_C_H____T_E_S_T____ ), __VA_ARGS__ )
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:783:35: note: expanded from macro 'INTERNAL_CATCH_TESTCASE2'
783 | namespace{ Catch::AutoReg INTERNAL_CATCH_UNIQUE_NAME( autoRegistrar )( &TestName, CATCH_INTERNAL_LINEINFO, Catch::NameAndDesc( __VA_ARGS__ ) ); } \
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
test-cpp.cpp:219:3: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
219 | test_that("GGomnbd CET Hyp2F1 same as Mathematica"){
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/testthat.h:181:20: note: expanded from macro 'test_that'
181 | # define test_that CATCH_SECTION
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:11407:34: note: expanded from macro 'CATCH_SECTION'
11407 | #define CATCH_SECTION( ... ) INTERNAL_CATCH_SECTION( __VA_ARGS__ )
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:2479:35: note: expanded from macro 'INTERNAL_CATCH_SECTION'
2479 | if( Catch::Section const& INTERNAL_CATCH_UNIQUE_NAME( catch_internal_Section ) = Catch::SectionInfo( CATCH_INTERNAL_LINEINFO, __VA_ARGS__ ) )
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
25 warnings generated.
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG `/data/gannet/ripley/R/R-clang/bin/Rscript -e "RcppGSL:::CFlags()"` -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppGSL/include' -I'/data/gannet/ripley/R/test-clang/testthat/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c test-runner.cpp -o test-runner.o
clang++-22 -stdlib=libc++ -std=gnu++20 -shared -L/usr/local/clang/lib64 -L/usr/local/clang22/lib -L/usr/local/clang22/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang21/lib/clang/22/lib/x86_64-unknown-linux-gnu -o CLVTools.so RcppExports.o bgnbd.o clv_vectorized.o gg_LL.o ggomnbd.o pnbd.o pnbd_dyncov_LL.o test-cpp.o test-runner.o -fopenmp -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lflang_rt.runtime -lm -lgsl -lgslcblas -lm
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/CLVTools/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/CLVTools/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/CLVTools/src'
installing to /data/gannet/ripley/R/packages/tests-clang/CLVTools.Rcheck/00LOCK-CLVTools/00new/CLVTools/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for ‘hessian’ in package ‘CLVTools’
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (CLVTools)