• using R Under development (unstable) (2025-08-08 r88539)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     clang version 20.1.8     flang version 20.1.8
• running under: Fedora Linux 42 (Workstation Edition)
• using session charset: UTF-8
• using option ‘--no-stop-on-test-error’
• checking for file ‘BoneDensityMapping/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘BoneDensityMapping’ version ‘0.1.2’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘BoneDensityMapping’ can be installed ... [24s/29s] OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [33s/43s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [7s/11s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [20s/88s] ERROR   Running ‘testthat.R’ [19s/87s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > # This file is part of the standard setup for testthat.   > # It is recommended that you do not modify it.   > #   > # Where should you do additional test configuration?   > # Learn more about the roles of various files in:   > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview   > # * https://testthat.r-lib.org/articles/special-files.html   >   > library(testthat)   > library(BoneDensityMapping)   >   > test_check("BoneDensityMapping")   trying URL 'https://github.com/Telfer/BoneDensityMapping/releases/download/v1.0.2/test_CT_femur.stl'   Content type 'application/octet-stream' length 2002384 bytes (1.9 MB)   ==================================================   downloaded 1.9 MB      Removed 100113 duplicate 0 unreferenced vertices and 0 duplicate faces   trying URL 'https://github.com/Telfer/BoneDensityMapping/releases/download/v1.0.1/test_CT_hip.nii.gz'   Content type 'application/octet-stream' length 13813973 bytes (13.2 MB)   ==================================================   downloaded 13.2 MB      trying URL 'https://github.com/Telfer/BoneDensityMapping/releases/download/v1.0.2/test_CT_femur.stl'   Content type 'application/octet-stream' length 2002384 bytes (1.9 MB)   ==================================================   downloaded 1.9 MB      Removed 100113 duplicate 0 unreferenced vertices and 0 duplicate faces   trying URL 'https://github.com/Telfer/BoneDensityMapping/releases/download/v1.0.1/test_CT_hip.nii.gz'   Content type 'application/octet-stream' length 13813973 bytes (13.2 MB)   ==================================================   downloaded 13.2 MB      trying URL 'https://github.com/Telfer/BoneDensityMapping/releases/download/v1.0.2/test_CT_femur.stl'   Content type 'application/octet-stream' length 2002384 bytes (1.9 MB)   ==================================================   downloaded 1.9 MB      Removed 100113 duplicate 0 unreferenced vertices and 0 duplicate faces   trying URL 'https://github.com/Telfer/BoneDensityMapping/releases/download/v1.0.1/test_CT_hip.nii.gz'   Content type 'application/octet-stream' length 13813973 bytes (13.2 MB)   ==================================================   downloaded 13.2 MB      Error in vcgImport(surface_mesh_filepath) : object 'type' not found   trying URL 'https://github.com/Telfer/BoneDensityMapping/releases/download/v1.0.2/test_CT_femur.stl'   Content type 'application/octet-stream' length 2002384 bytes (1.9 MB)   ==================================================   downloaded 1.9 MB      Removed 100113 duplicate 0 unreferenced vertices and 0 duplicate faces   trying URL 'https://github.com/Telfer/BoneDensityMapping/releases/download/v1.0.1/test_CT_hip.nii.gz'   trying URL 'https://github.com/Telfer/BoneDensityMapping/releases/download/v1.0.2/test_CT_femur.stl'   Content type 'application/octet-stream' length 2002384 bytes (1.9 MB)   ==================================================   downloaded 1.9 MB      Removed 100113 duplicate 0 unreferenced vertices and 0 duplicate faces   OMP: Warning #96: Cannot form a team with 8 threads, using 2 instead.   OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).   trying URL 'https://github.com/Telfer/BoneDensityMapping/releases/download/v1.0.2/test_CT_femur.stl'   Content type 'application/octet-stream' length 2002384 bytes (1.9 MB)   ==================================================   downloaded 1.9 MB      Removed 100113 duplicate 0 unreferenced vertices and 0 duplicate faces   trying URL 'https://github.com/Telfer/BoneDensityMapping/releases/download/v1.0.1/test_CT_hip.nii.gz'   Content type 'application/octet-stream' length 13813973 bytes (13.2 MB)   ==================================================   downloaded 13.2 MB      trying URL 'https://github.com/Telfer/BoneDensityMapping/releases/download/v1.0.2/SCAP001.stl'   Content type 'application/octet-stream' length 1000084 bytes (976 KB)   ==================================================   downloaded 976 KB      Removed 49998 duplicate 0 unreferenced vertices and 0 duplicate faces   trying URL 'https://github.com/Telfer/BoneDensityMapping/releases/download/v1.0.2/SCAP001.stl'   Content type 'application/octet-stream' length 1000084 bytes (976 KB)   ==================================================   downloaded 976 KB      Removed 49998 duplicate 0 unreferenced vertices and 0 duplicate faces        |     | | 0%     |     | | 1%     |     |= | 1%     |     |= | 2%     |     |== | 2%     |     |== | 3%     |     |=== | 4%     |     |=== | 5%     |     |==== | 5%     |     |==== | 6%     |     |===== | 7%     |     |===== | 8%     |     |====== | 8%     |     |====== | 9%     |     |======= | 9%     |     |======= | 10%     |     |======= | 11%     |     |======== | 11%     |     |======== | 12%     |     |========= | 12%     |     |========= | 13%     |     |========== | 14%     |     |========== 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'https://github.com/Telfer/BoneDensityMapping/releases/download/v1.0.1/test_CT_hip.nii.gz'   Content type 'application/octet-stream' length 13813973 bytes (13.2 MB)   ==================================================   downloaded 13.2 MB      [ FAIL 1 | WARN 1 | SKIP 0 | PASS 48 ]      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test-import_scan.R:8:1'): (code run outside of `test_that()`) ───────   Error in `download.file(url2, scan_filepath, mode = "wb")`: cannot open URL 'https://github.com/Telfer/BoneDensityMapping/releases/download/v1.0.1/test_CT_hip.nii.gz'   Backtrace:       ▆    1. └─utils::download.file(url2, scan_filepath, mode = "wb") at test-import_scan.R:8:1      [ FAIL 1 | WARN 1 | SKIP 0 | PASS 48 ]   Error: Test failures   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [191s/166s] OK
• checking PDF version of manual ... [7s/10s] OK
• checking HTML version of manual ... OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 1 ERROR