• using R Under development (unstable) (2026-10-01 r90606)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     clang version 23.1.2     flang version 23.1.2
• running under: Fedora Linux 44 (Server Edition)
• using session charset: UTF-8 * current time: 2026-10-01 10:48:56 UTC
• using option ‘--no-stop-on-test-error’
• checking for file ‘BeeBDC/DESCRIPTION’ ... OK
• this is package ‘BeeBDC’ version ‘1.3.5’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘BeeBDC’ can be installed ... [37s/158s] OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [8s/30s] OK
• checking whether the package can be loaded with stated dependencies ... [8s/29s] OK
• checking whether the package can be unloaded cleanly ... [8s/28s] OK
• checking whether the namespace can be loaded with stated dependencies ... [8s/29s] OK
• checking whether the namespace can be unloaded cleanly ... [8s/29s] OK
• checking loading without being on the library search path ... [8s/28s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [57s/171s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking examples ... [31s/85s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [50s/139s] ERROR   Running ‘testthat.R’ [50s/139s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > # This file is part of the standard setup for testthat.   > # It is recommended that you do not modify it.   > #   > # Where should you do additional test configuration?   > # Learn more about the roles of various files in:   > # * https://r-pkgs.org/tests.html   > # * https://testthat.r-lib.org/reference/test_package.html#special-files   >   > library("testthat")   > library("BeeBDC")   >   > testthat::test_check("BeeBDC")   Spherical geometry (s2) switched off   although coordinates are longitude/latitude, st_intersects assumes that they   are planar   although coordinates are longitude/latitude, st_intersects assumes that they   are planar   Spherical geometry (s2) switched on   Spherical geometry (s2) switched off   although coordinates are longitude/latitude, st_intersects assumes that they   are planar   although coordinates are longitude/latitude, st_intersects assumes that they   are planar   dist is assumed to be in decimal degrees (arc_degrees).   although coordinates are longitude/latitude, st_intersects assumes that they   are planar   although coordinates are longitude/latitude, st_intersects assumes that they   are planar   duckdb is storing downloaded extensions and secrets under ~/.duckdb:   i /data/localhost/ripley/.duckdb   This persists across sessions and is shared with the DuckDB CLI and other clients.   i Run duckdb(shared_home = FALSE) to use a temporary directory instead.   i See ?duckdb_storage for details and alternatives.   duckdb was built with libc++ (not libstdc++) on Linux, so DuckDB extensions are disabled:   * Loading a prebuilt (libstdc++) extension could crash R (https://github.com/duckdb/duckdb-r/issues/1107).   * INSTALL/LOAD of an extension will error, and automatic extension loading is off.   i Pass duckdb(allow_extensions = FALSE) to accept this and silence this message.   i Pass duckdb(allow_extensions = TRUE) to attempt loading anyway (may crash R).   i See ?duckdb for details.   Saving _problems/test-taxadbToBeeBDC-14.R   [ FAIL 1 | WARN 16 | SKIP 0 | PASS 248 ]      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test-taxadbToBeeBDC.R:7:2'): (code run outside of `test_that()`) ────   Error: Could not reach the taxadb data repository at cboettig/taxadb   Backtrace:       ▆    1. └─BeeBDC::taxadbToBeeBDC(...) at test-taxadbToBeeBDC.R:7:2    2. └─taxadb::td_create(...)    3. └─taxadb::td_download(...)      [ FAIL 1 | WARN 16 | SKIP 0 | PASS 248 ]   Error:   ! Test failures.   Execution halted
• checking PDF version of manual ... [6s/15s] OK
• checking HTML version of manual ... OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 1 ERROR