* installing *source* package ‘BNPmix’ ...
** this is package ‘BNPmix’ version ‘1.0.2’
** package ‘BNPmix’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘clang version 21.1.0-rc3’
using C++ compiler: ‘clang version 21.1.0-rc3’
using C++11
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/BNPmix/src'
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppDist/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c BNPmix_init.c -o BNPmix_init.o
/usr/local/clang21/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppDist/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c CommonUtilities.cpp -o CommonUtilities.o
/usr/local/clang21/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppDist/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c DdpFunctions.cpp -o DdpFunctions.o
/usr/local/clang21/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppDist/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c Distributions.cpp -o Distributions.o
/usr/local/clang21/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppDist/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c IcsFunctions.cpp -o IcsFunctions.o
/usr/local/clang21/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppDist/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c MAR.cpp -o MAR.o
/usr/local/clang21/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppDist/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c MarFunctions.cpp -o MarFunctions.o
IcsFunctions.cpp:404:65: warning: unused variable 'mu_m' [-Wunused-variable]
404 | double m_temp, s2_temp, tau1_temp, tau2_temp, a_temp, b_temp, mu_m;
| ^~~~
IcsFunctions.cpp:940:10: warning: unused variable 'd' [-Wunused-variable]
940 | double d = (double) data.n_cols;
| ^
IcsFunctions.cpp:1277:10: warning: unused variable 'd' [-Wunused-variable]
1277 | double d = (double) data.n_cols;
| ^
IcsFunctions.cpp:1395:65: warning: variable 'mu_m' set but not used [-Wunused-but-set-variable]
1395 | double m_temp, s2_temp, tau1_temp, tau2_temp, a_temp, b_temp, mu_m;
| ^
IcsFunctions.cpp:2009:9: warning: unused variable 'nj' [-Wunused-variable]
2009 | int nj = sum(clust == j);
| ^~
IcsFunctions.cpp:2091:10: warning: unused variable 'tsigma2' [-Wunused-variable]
2091 | double tsigma2;
| ^~~~~~~
MarFunctions.cpp:340:65: warning: variable 'mu_m' set but not used [-Wunused-but-set-variable]
340 | double m_temp, s2_temp, tau1_temp, tau2_temp, a_temp, b_temp, mu_m;
| ^
MarFunctions.cpp:951:7: warning: unused variable 'old_max' [-Wunused-variable]
951 | int old_max = max(clust);
| ^~~~~~~
MarFunctions.cpp:1101:65: warning: variable 'mu_m' set but not used [-Wunused-but-set-variable]
1101 | double m_temp, s2_temp, tau1_temp, tau2_temp, a_temp, b_temp, mu_m;
| ^
MarFunctions.cpp:1585:9: warning: unused variable 'nj' [-Wunused-variable]
1585 | int nj = sum(clust == j);
| ^~
MarFunctions.cpp:1668:10: warning: unused variable 'tsigma2' [-Wunused-variable]
1668 | double tsigma2;
| ^~~~~~~
MarFunctions.cpp:1732:10: warning: unused variable 'an' [-Wunused-variable]
1732 | double an, bn, prob_temp;
| ^~
MarFunctions.cpp:1732:14: warning: unused variable 'bn' [-Wunused-variable]
1732 | double an, bn, prob_temp;
| ^~
/usr/local/clang21/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppDist/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c RcppExports.cpp -o RcppExports.o
/usr/local/clang21/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppDist/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c SliFunctions.cpp -o SliFunctions.o
6 warnings generated.
/usr/local/clang21/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppDist/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c cDDP.cpp -o cDDP.o
cDDP.cpp:138:10: warning: unused variable 'temp2' [-Wunused-variable]
138 | double temp2;
| ^~~~~
/usr/local/clang21/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppDist/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c cICS.cpp -o cICS.o
1 warning generated.
7 warnings generated.
/usr/local/clang21/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppDist/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c cSLI.cpp -o cSLI.o
/usr/local/clang21/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppDist/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c est_partition.cpp -o est_partition.o
/usr/local/clang21/bin/clang++ -std=gnu++11 -shared -L/usr/local/clang/lib64 -L/usr/local/clang21/lib -L/usr/local/clang21/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang21/lib/clang/21/lib/x86_64-unknown-linux-gnu -o BNPmix.so BNPmix_init.o CommonUtilities.o DdpFunctions.o Distributions.o IcsFunctions.o MAR.o MarFunctions.o RcppExports.o SliFunctions.o cDDP.o cICS.o cSLI.o est_partition.o -fopenmp -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lflang_rt.runtime -lm
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/BNPmix/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/BNPmix/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/BNPmix/src'
installing to /data/gannet/ripley/R/packages/tests-clang/BNPmix.Rcheck/00LOCK-BNPmix/00new/BNPmix/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BNPmix)