* installing *source* package ‘BHSBVAR’ ...
** this is package ‘BHSBVAR’ version ‘3.1.2’
** package ‘BHSBVAR’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘clang version 21.1.2’
using C++ compiler: ‘clang version 21.1.2’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/BHSBVAR/src'
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c BHSBVAR-init.c -o BHSBVAR-init.o
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c BHSBVAR.cpp -o BHSBVAR.o
BHSBVAR.cpp:86:17: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
86 | if (arma::is_finite(pA(i, j, 0))) {
| ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:164:3: note: 'is_finite<double>' has been explicitly marked deprecated here
164 | [[deprecated("change arma::is_finite(val) to std::isfinite(val)")]]
| ^
BHSBVAR.cpp:111:17: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
111 | if (arma::is_finite(pH(i, j, 0))) {
| ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:164:3: note: 'is_finite<double>' has been explicitly marked deprecated here
164 | [[deprecated("change arma::is_finite(val) to std::isfinite(val)")]]
| ^
BHSBVAR.cpp:138:13: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
138 | if (arma::is_finite(pdetA(0, 0, 0))) {
| ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:164:3: note: 'is_finite<double>' has been explicitly marked deprecated here
164 | [[deprecated("change arma::is_finite(val) to std::isfinite(val)")]]
| ^
BHSBVAR.cpp:202:18: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
202 | if ((arma::is_finite(pH(j, i, 0))) && (pH(j, i, 0) == 0.0) && (arma::is_finite(pH(j, i, 1)))) {
| ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:164:3: note: 'is_finite<double>' has been explicitly marked deprecated here
164 | [[deprecated("change arma::is_finite(val) to std::isfinite(val)")]]
| ^
BHSBVAR.cpp:202:76: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
202 | if ((arma::is_finite(pH(j, i, 0))) && (pH(j, i, 0) == 0.0) && (arma::is_finite(pH(j, i, 1)))) {
| ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:164:3: note: 'is_finite<double>' has been explicitly marked deprecated here
164 | [[deprecated("change arma::is_finite(val) to std::isfinite(val)")]]
| ^
BHSBVAR.cpp:229:19: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
229 | if (arma::is_finite(pA(j, i, 0))) {
| ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:164:3: note: 'is_finite<double>' has been explicitly marked deprecated here
164 | [[deprecated("change arma::is_finite(val) to std::isfinite(val)")]]
| ^
BHSBVAR.cpp:233:21: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
233 | if (arma::is_finite(pA(j, i, 1))) {
| ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:164:3: note: 'is_finite<double>' has been explicitly marked deprecated here
164 | [[deprecated("change arma::is_finite(val) to std::isfinite(val)")]]
| ^
BHSBVAR.cpp:281:22: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
281 | if ((arma::is_finite(pH(j, i, 0))) && (arma::is_finite(pH(j, i, 1)))) {
| ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:164:3: note: 'is_finite<double>' has been explicitly marked deprecated here
164 | [[deprecated("change arma::is_finite(val) to std::isfinite(val)")]]
| ^
BHSBVAR.cpp:281:56: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
281 | if ((arma::is_finite(pH(j, i, 0))) && (arma::is_finite(pH(j, i, 1)))) {
| ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:164:3: note: 'is_finite<double>' has been explicitly marked deprecated here
164 | [[deprecated("change arma::is_finite(val) to std::isfinite(val)")]]
| ^
BHSBVAR.cpp:302:36: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
302 | if ((sign_test == 0) && (arma::is_finite(pdetA(0, 0, 0))) && (arma::is_finite(pdetA(0, 0, 1)))) {
| ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:164:3: note: 'is_finite<double>' has been explicitly marked deprecated here
164 | [[deprecated("change arma::is_finite(val) to std::isfinite(val)")]]
| ^
BHSBVAR.cpp:302:73: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
302 | if ((sign_test == 0) && (arma::is_finite(pdetA(0, 0, 0))) && (arma::is_finite(pdetA(0, 0, 1)))) {
| ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:164:3: note: 'is_finite<double>' has been explicitly marked deprecated here
164 | [[deprecated("change arma::is_finite(val) to std::isfinite(val)")]]
| ^
BHSBVAR.cpp:368:21: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
368 | if (arma::is_finite(pA(j, i, 6))) {
| ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:164:3: note: 'is_finite<double>' has been explicitly marked deprecated here
164 | [[deprecated("change arma::is_finite(val) to std::isfinite(val)")]]
| ^
BHSBVAR.cpp:402:23: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
402 | if (arma::is_finite(pA(j, i, 6))) {
| ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:164:3: note: 'is_finite<double>' has been explicitly marked deprecated here
164 | [[deprecated("change arma::is_finite(val) to std::isfinite(val)")]]
| ^
BHSBVAR.cpp:521:17: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
521 | if (arma::is_finite(priors(i, j, 0))) {
| ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:164:3: note: 'is_finite<double>' has been explicitly marked deprecated here
164 | [[deprecated("change arma::is_finite(val) to std::isfinite(val)")]]
| ^
BHSBVAR.cpp:938:17: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
938 | if (arma::is_finite(pA(j, i, 6))) {
| ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:164:3: note: 'is_finite<double>' has been explicitly marked deprecated here
164 | [[deprecated("change arma::is_finite(val) to std::isfinite(val)")]]
| ^
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c RcppExports.cpp -o RcppExports.o
15 warnings generated.
/usr/local/clang21/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang21/lib -L/usr/local/clang21/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang21/lib/clang/21/lib/x86_64-unknown-linux-gnu -o BHSBVAR.so BHSBVAR-init.o BHSBVAR.o RcppExports.o -fopenmp -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lflang_rt.runtime -lm
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/BHSBVAR/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/BHSBVAR/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/BHSBVAR/src'
installing to /data/gannet/ripley/R/packages/tests-clang/BHSBVAR.Rcheck/00LOCK-BHSBVAR/00new/BHSBVAR/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BHSBVAR)