- using R Under development (unstable) (2024-09-30 r87204)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
clang version 19.1.0
flang-new version 19.1.0
- running under: Fedora Linux 36 (Workstation Edition)
- using session charset: UTF-8
- using option ‘--no-stop-on-test-error’
- checking for file ‘BAMBI/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘BAMBI’ version ‘2.3.5’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘BAMBI’ can be installed ... [151s/131s] OK
See the install log for details.
- used C++ compiler: ‘clang version 19.1.0’
- checking installed package size ... OK
- checking package directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [55s/64s] OK
- checking Rd files ... NOTE
checkRd: (-1) contour.angmcmc.Rd:48: Lost braces; missing escapes or markup?
48 | Ignored if {show.data == FALSE}.}
| ^
checkRd: (-1) contour.angmcmc.Rd:51: Lost braces; missing escapes or markup?
51 | Ignored if {show.data == FALSE}.}
| ^
checkRd: (-1) fit_incremental_angmix.Rd:104: Lost braces; missing escapes or markup?
104 | \item{alpha}{significance level used in the test H_{0K}: expected log predictive density (elpd) for the fitted model with K components >= elpd for the fitted model
| ^
checkRd: (-1) fit_incremental_angmix.Rd:148: Lost braces; missing escapes or markup?
148 | H_{0K}: expected log predictive density (elpd) for the fitted model with K components >= elpd for the fitted model
| ^
checkRd: (-1) fit_incremental_angmix.Rd:163: Lost braces; missing escapes or markup?
163 | The incremental fitting stops if H_{0K} cannot be rejected
| ^
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking compilation flags in Makevars ... OK
- checking for GNU extensions in Makefiles ... OK
- checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
- checking use of PKG_*FLAGS in Makefiles ... OK
- checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
- checking pragmas in C/C++ headers and code ... OK
- checking compilation flags used ... OK
- checking compiled code ... OK
- checking examples ... [21s/24s] OK
- checking PDF version of manual ... [10s/15s] OK
- checking HTML version of manual ... NOTE
Found the following HTML validation problems:
rwnorm2.html:111:126 (rwnorm2.Rd:60): Warning: trimming empty <code>
rwnorm2.html:115:73 (rwnorm2.Rd:61): Warning: trimming empty <code>
rwnorm2.html:115:146 (rwnorm2.Rd:61): Warning: trimming empty <code>
rwnorm2.html:115:211 (rwnorm2.Rd:61): Warning: trimming empty <code>
rwnorm2.html:119:126 (rwnorm2.Rd:62): Warning: trimming empty <code>
- checking for non-standard things in the check directory ... OK
- checking for detritus in the temp directory ... OK
- DONE
Status: 2 NOTEs