* installing *source* package ‘AntMAN’ ...
** package ‘AntMAN’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘clang version 18.1.4’
using C++11
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/AntMAN/src'
/usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -DHAS_RCPP -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c AntMan.cpp -o AntMan.o
/usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -DHAS_RCPP -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c RcppExports.cpp -o RcppExports.o
In file included from AntMan.cpp:6:
In file included from ./Mixtures.h:10:
In file included from ./MixtureMultivariateBinomial.h:11:
./Mixture.h:150:10: warning: variable 'total_u' set but not used [-Wunused-but-set-variable]
150 | double total_u = 0;
| ^
./Mixture.h:152:10: warning: variable 'total_mna' set but not used [-Wunused-but-set-variable]
152 | double total_mna = 0;
| ^
AntMan.cpp:281:6: warning: variable 'q' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized]
281 | if (mix_components_prior.containsElementNamed("Mstar")) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
AntMan.cpp:319:39: note: uninitialized use occurs here
319 | Prior* prior = new PriorDirac (*h,*q);
| ^
AntMan.cpp:281:2: note: remove the 'if' if its condition is always true
281 | if (mix_components_prior.containsElementNamed("Mstar")) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
282 | q = new dirac_gamma_q_param_t(
283 | Rcpp::as<double>(mix_components_prior["Mstar"]));
284 | } else {
| ~~~~~~~
285 | VERBOSE_ERROR("Mstar argument not found.");
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
286 | }
| ~
AntMan.cpp:255:27: note: initialize the variable 'q' to silence this warning
255 | dirac_gamma_q_param_t * q;
| ^
| = nullptr
AntMan.cpp:345:13: warning: variable 'prior' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized]
345 | } else if ((prior_type == "AM_mix_components_prior_dirac") && (weight_type == "AM_mix_weights_prior_gamma")) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
AntMan.cpp:351:9: note: uninitialized use occurs here
351 | return prior;
| ^~~~~
AntMan.cpp:345:9: note: remove the 'if' if its condition is always true
345 | } else if ((prior_type == "AM_mix_components_prior_dirac") && (weight_type == "AM_mix_weights_prior_gamma")) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
346 | prior = gen_dirac_gamma(mix_components_prior, mix_weight_prior, y);
347 | } else{
| ~~~~~
348 | VERBOSE_ERROR("Unknown prior: Please could you make sure you properly used the AM_mix_components_prior and AM_mix_weights commands.");
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
349 | }
| ~
AntMan.cpp:345:13: warning: variable 'prior' is used uninitialized whenever '&&' condition is false [-Wsometimes-uninitialized]
345 | } else if ((prior_type == "AM_mix_components_prior_dirac") && (weight_type == "AM_mix_weights_prior_gamma")) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
AntMan.cpp:351:9: note: uninitialized use occurs here
351 | return prior;
| ^~~~~
AntMan.cpp:345:13: note: remove the '&&' if its condition is always true
345 | } else if ((prior_type == "AM_mix_components_prior_dirac") && (weight_type == "AM_mix_weights_prior_gamma")) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
AntMan.cpp:339:14: note: initialize the variable 'prior' to silence this warning
339 | Prior* prior;
| ^
| = nullptr
/usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -DHAS_RCPP -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c calcola_stirling260.cpp -o calcola_stirling260.o
In file included from AntMan.cpp:6:
In file included from ./Mixtures.h:10:
In file included from ./MixtureMultivariateBinomial.h:11:
In file included from ./Mixture.h:13:
In file included from ./Prior.h:12:
./AntMANLogger.h:39:15: warning: private field '_max_size' is not used [-Wunused-private-field]
39 | const size_t _max_size;
| ^
6 warnings generated.
/usr/local/clang18/bin/clang++ -std=gnu++11 -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o AntMAN.so AntMan.o RcppExports.o calcola_stirling260.o -fopenmp -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lFortran_main -lFortranRuntime -lFortranDecimal -lm
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/AntMAN/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/AntMAN/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/AntMAN/src'
installing to /data/gannet/ripley/R/packages/tests-clang/AntMAN.Rcheck/00LOCK-AntMAN/00new/AntMAN/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (AntMAN)