* installing *source* package ‘APML0’ ...
** this is package ‘APML0’ version ‘0.11’
** package ‘APML0’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘clang version 22.1.7 (https://github.com/llvm/llvm-project a255c1ed36a1d06f79bd2633ba9f8d900153007c)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/APML0/src'
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c APML0.cpp -o APML0.o
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c RcppExports.cpp -o RcppExports.o
In file included from RcppExports.cpp:4:
In file included from ./../inst/include/APML0.h:7:
In file included from ./../inst/include/APML0_RcppExports.h:7:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from RcppExports.cpp:4:
In file included from ./../inst/include/APML0.h:7:
In file included from ./../inst/include/APML0_RcppExports.h:7:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from APML0.cpp:3:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from APML0.cpp:3:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from RcppExports.cpp:4:
In file included from ./../inst/include/APML0.h:7:
In file included from ./../inst/include/APML0_RcppExports.h:7:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from APML0.cpp:3:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from RcppExports.cpp:4:
In file included from ./../inst/include/APML0.h:7:
In file included from ./../inst/include/APML0_RcppExports.h:7:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
In file included from APML0.cpp:3:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
APML0.cpp:240:14: warning: unused variable 'ia' [-Wunused-variable]
240 | int i, j, ia=0;
| ^~
APML0.cpp:241:16: warning: unused variable 'rss1' [-Wunused-variable]
241 | double rss0, rss1, RSS0;
| ^~~~
APML0.cpp:243:14: warning: unused variable 'dbMax' [-Wunused-variable]
243 | double xr, dbMax;
| ^~~~~
APML0.cpp:303:24: warning: unused variable 'iadd' [-Wunused-variable]
303 | int i, j, it=0, il, iadd, ia=0;
| ^~~~
APML0.cpp:304:29: warning: variable 'rss1' set but not used [-Wunused-but-set-variable]
304 | double zi, b0, db0, rss0, rss1, RSS0;
| ^
APML0.cpp:305:10: warning: unused variable 'lambdaMax' [-Wunused-variable]
305 | double lambdaMax;
| ^~~~~~~~~
APML0.cpp:336:5: warning: unused label 'local' [-Wunused-label]
336 | local:
| ^~~~~~
APML0.cpp:398:29: warning: variable 'rss1' set but not used [-Wunused-but-set-variable]
398 | double zi, b0, db0, rss0, rss1, RSS0;
| ^
APML0.cpp:544:10: warning: unused variable 'lambda2i' [-Wunused-variable]
544 | double lambda2i, zi, obj0, obj1, rss0, rss1, b0, db0, objQi, objQj, RSS0;
| ^~~~~~~~
APML0.cpp:544:24: warning: unused variable 'obj0' [-Wunused-variable]
544 | double lambda2i, zi, obj0, obj1, rss0, rss1, b0, db0, objQi, objQj, RSS0;
| ^~~~
APML0.cpp:544:30: warning: unused variable 'obj1' [-Wunused-variable]
544 | double lambda2i, zi, obj0, obj1, rss0, rss1, b0, db0, objQi, objQj, RSS0;
| ^~~~
APML0.cpp:544:42: warning: variable 'rss1' set but not used [-Wunused-but-set-variable]
544 | double lambda2i, zi, obj0, obj1, rss0, rss1, b0, db0, objQi, objQj, RSS0;
| ^
APML0.cpp:544:57: warning: unused variable 'objQi' [-Wunused-variable]
544 | double lambda2i, zi, obj0, obj1, rss0, rss1, b0, db0, objQi, objQj, RSS0;
| ^~~~~
APML0.cpp:544:64: warning: unused variable 'objQj' [-Wunused-variable]
544 | double lambda2i, zi, obj0, obj1, rss0, rss1, b0, db0, objQi, objQj, RSS0;
| ^~~~~
APML0.cpp:687:19: warning: unused variable 'objQi' [-Wunused-variable]
687 | double zi, zi2, objQi=0.0, objQj, obj0, obj1, rss0, rss1, b0, db0, RSS0;
| ^~~~~
APML0.cpp:687:30: warning: unused variable 'objQj' [-Wunused-variable]
687 | double zi, zi2, objQi=0.0, objQj, obj0, obj1, rss0, rss1, b0, db0, RSS0;
| ^~~~~
APML0.cpp:687:37: warning: unused variable 'obj0' [-Wunused-variable]
687 | double zi, zi2, objQi=0.0, objQj, obj0, obj1, rss0, rss1, b0, db0, RSS0;
| ^~~~
APML0.cpp:687:43: warning: unused variable 'obj1' [-Wunused-variable]
687 | double zi, zi2, objQi=0.0, objQj, obj0, obj1, rss0, rss1, b0, db0, RSS0;
| ^~~~
APML0.cpp:687:55: warning: variable 'rss1' set but not used [-Wunused-but-set-variable]
687 | double zi, zi2, objQi=0.0, objQj, obj0, obj1, rss0, rss1, b0, db0, RSS0;
| ^
APML0.cpp:842:10: warning: unused variable 'lambda2i' [-Wunused-variable]
842 | double lambda2i, zi, zi2, objQi=0.0, objQj, obj0, obj1, rss0, rss1, b0, db0, RSS0;
| ^~~~~~~~
APML0.cpp:842:29: warning: unused variable 'objQi' [-Wunused-variable]
842 | double lambda2i, zi, zi2, objQi=0.0, objQj, obj0, obj1, rss0, rss1, b0, db0, RSS0;
| ^~~~~
APML0.cpp:842:40: warning: unused variable 'objQj' [-Wunused-variable]
842 | double lambda2i, zi, zi2, objQi=0.0, objQj, obj0, obj1, rss0, rss1, b0, db0, RSS0;
| ^~~~~
APML0.cpp:842:47: warning: unused variable 'obj0' [-Wunused-variable]
842 | double lambda2i, zi, zi2, objQi=0.0, objQj, obj0, obj1, rss0, rss1, b0, db0, RSS0;
| ^~~~
APML0.cpp:842:53: warning: unused variable 'obj1' [-Wunused-variable]
842 | double lambda2i, zi, zi2, objQi=0.0, objQj, obj0, obj1, rss0, rss1, b0, db0, RSS0;
| ^~~~
APML0.cpp:842:65: warning: variable 'rss1' set but not used [-Wunused-but-set-variable]
842 | double lambda2i, zi, zi2, objQi=0.0, objQj, obj0, obj1, rss0, rss1, b0, db0, RSS0;
| ^
5 warnings generated.
30 warnings generated.
clang++-22 -stdlib=libc++ -std=gnu++20 -shared -L/usr/local/clang/lib64 -L/usr/local/clang22/lib -L/usr/local/clang22/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -o APML0.so APML0.o RcppExports.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/APML0/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/APML0/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/APML0/src'
installing to /data/gannet/ripley/R/packages/tests-clang/APML0.Rcheck/00LOCK-APML0/00new/APML0/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (APML0)