- using R Under development (unstable) (2024-10-22 r87265)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
clang version 19.1.2
flang-new version 19.1.2
- running under: Fedora Linux 36 (Workstation Edition)
- using session charset: UTF-8
- using option ‘--no-stop-on-test-error’
- checking for file ‘ADPclust/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘ADPclust’ version ‘0.7’
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘ADPclust’ can be installed ... OK
See the install log for details.
- checking installed package size ... OK
- checking package directory ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... NOTE
Namespaces in Imports field not imported from:
‘fields’ ‘knitr’
All declared Imports should be used.
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... OK
- checking Rd files ... NOTE
checkRd: (-1) FindCentersAutoV.Rd:27: Lost braces; missing escapes or markup?
27 | Given f's and delta's, cluster centers are chosen to be the data points whose delta values are high and f values are larger than a fixed threshold. To be more specific, let F denote the set of all f(x). centers are selected as points with the largest m delta values in the set {x | f(x) > a'th percentile of F}. The number of centers m is given by the parameter nclust. The cutting percentile a is given by the parameter f.cut. When at least one of these two parameters are vectors, centers are selected based all combinations of them, and returned in a list.
| ^
checkRd: (-1) FindClustersAuto.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) FindClustersAuto.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) FindClustersAuto.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) FindClustersAuto.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) FindClustersManual.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) FindClustersManual.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) FindClustersManual.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) FindClustersManual.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) FindFD.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FindFD.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FindFD.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) adpclust.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) adpclust.Rd:29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) adpclust.Rd:36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) adpclust.Rd:37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) adpclust.Rd:38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) adpclust.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) adpclust.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) adpclust.Rd:50: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) adpclust.Rd:51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) adpclust.Rd:52: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) adpclust.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) adpclust.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) adpclust.Rd:55: Lost braces in \itemize; \value handles \item{}{} directly
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [14s/17s] OK
Running ‘testthat.R’ [14s/16s]
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [21s/25s] OK
- checking PDF version of manual ... [7s/11s] OK
- checking HTML version of manual ... OK
- checking for non-standard things in the check directory ... OK
- checking for detritus in the temp directory ... OK
- DONE
Status: 2 NOTEs