* installing *source* package ‘ACEt’ ...
** package ‘ACEt’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘clang version 18.1.4’
using C++ compiler: ‘clang version 18.1.4’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/ACEt/src'
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c AtCtEt.cpp -o AtCtEt.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c AtCtEtp.cpp -o AtCtEtp.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c AtDtEt.cpp -o AtDtEt.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c AtEtp.cpp -o AtEtp.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c RInterface.cc -o RInterface.o
AtCtEtp.cpp:294:6: warning: unused variable 'num_a' [-Wunused-variable]
294 | int num_a = b_a_m.n_cols;
| ^~~~~
AtCtEtp.cpp:295:6: warning: unused variable 'num_c' [-Wunused-variable]
295 | int num_c = b_c_m.n_cols;
| ^~~~~
AtCtEtp.cpp:296:6: warning: unused variable 'num_e' [-Wunused-variable]
296 | int num_e = b_e_m.n_cols;
| ^~~~~
AtDtEt.cpp:549:5: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
549 | return(Rcpp::wrap(res));
| ^
AtDtEt.cpp:542:3: note: previous statement is here
542 | for(int i=0; i<num_t; i++)
| ^
AtEtp.cpp:212:6: warning: unused variable 'num_a' [-Wunused-variable]
212 | int num_a = b_a_m.n_cols;
| ^~~~~
AtEtp.cpp:213:6: warning: unused variable 'num_e' [-Wunused-variable]
213 | int num_e = b_e_m.n_cols;
| ^~~~~
3 warnings generated.
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c mcmc.cc -o mcmc.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c packagename_init.c -o packagename_init.o
2 warnings generated.
mcmc.cc:31:76: warning: unused typedef 'gen_type' [-Wunused-local-typedef]
31 | typedef boost::variate_generator<base_generator_type&, distribution_type> gen_type;
| ^
mcmc.cc:33:77: warning: unused typedef 'gen_type3' [-Wunused-local-typedef]
33 | typedef boost::variate_generator<base_generator_type&, distribution_type3> gen_type3;
| ^
mcmc.cc:934:77: warning: unused typedef 'gen_type3' [-Wunused-local-typedef]
934 | typedef boost::variate_generator<base_generator_type&, distribution_type3> gen_type3;
| ^
mcmc.cc:925:29: warning: unused typedef 'Mat_i' [-Wunused-local-typedef]
925 | typedef std::vector<Vec_i> Mat_i;
| ^
mcmc.cc:932:76: warning: unused typedef 'gen_type' [-Wunused-local-typedef]
932 | typedef boost::variate_generator<base_generator_type&, distribution_type> gen_type;
| ^
5 warnings generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o ACEt.so AtCtEt.o AtCtEtp.o AtDtEt.o AtEtp.o RInterface.o mcmc.o packagename_init.o -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lFortran_main -lFortranRuntime -lFortranDecimal -lm
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/ACEt/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/ACEt/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/ACEt/src'
installing to /data/gannet/ripley/R/packages/tests-clang/ACEt.Rcheck/00LOCK-ACEt/00new/ACEt/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ACEt)