• using R Under development (unstable) (2025-12-18 r89199)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-15 (Debian 15.2.0-11) 15.2.0     GNU Fortran (Debian 15.2.0-11) 15.2.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8
• checking for file ‘zonebuilder/DESCRIPTION’ ... OK
• this is package ‘zonebuilder’ version ‘0.1.0’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/2s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘zonebuilder’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the package can be unloaded cleanly ... [1s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
• checking loading without being on the library search path ... [1s/1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [5s/5s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [6s/6s] OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [10s/10s] ERROR Error(s) in re-building vignettes:   ... --- re-building ‘demo_dutch_cities.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘demo_dutch_cities.Rmd’ --- re-building ‘hackathon.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘hackathon.Rmd’ --- re-building ‘paper.Rmd’ using rmarkdown Quitting from paper.Rmd:221-234 [options] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `[.data.table`: ! attempt access index 4/4 in VECTOR_ELT --- Backtrace:      ▆   1. └─tools:::.buildOneVignette(...)   2. ├─base::tryCatch(...)   3. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)   4. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])   5. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)   6. └─engine$weave(file, quiet = quiet, encoding = enc)   7. └─knitr:::vweave_rmarkdown(...)   8. └─rmarkdown::render(...)   9. └─knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)  10. └─knitr:::process_file(text, output)  11. ├─xfun:::handle_error(...)  12. ├─base::withCallingHandlers(...)  13. └─knitr:::process_group(group)  14. └─knitr:::call_block(x)  15. └─knitr:::block_exec(params)  16. └─knitr:::eng_r(options)  17. ├─knitr:::in_input_dir(...)  18. │ └─knitr:::in_dir(input_dir(), expr)  19. └─knitr (local) evaluate(...)  20. └─evaluate::evaluate(...)  21. ├─base::withRestarts(...)  22. │ └─base (local) withRestartList(expr, restarts)  23. │ ├─base (local) withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])  24. │ │ └─base (local) doWithOneRestart(return(expr), restart)  25. │ └─base (local) withRestartList(expr, restarts[-nr])  26. │ └─base (local) withOneRestart(expr, restarts[[1L]])  27. │ └─base (local) doWithOneRestart(return(expr), restart)  28. ├─evaluate:::with_handlers(...)  29. │ ├─base::eval(call)  30. │ │ └─base::eval(call)  31. │ └─base::withCallingHandlers(...)  32. └─watcher$print_value(ev$value, ev$visible, envir)  33. ├─base::withVisible(handle_value(handler, value, visible, envir))  34. └─evaluate:::handle_value(handler, value, visible, envir)  35. └─handler$value(value, visible)  36. └─knitr (local) fun(x, options = options)  37. ├─base::withVisible(knit_print(x, ...))  38. ├─knitr::knit_print(x, ...)  39. └─tmap:::knit_print.tmap(x, ...)  40. └─tmap:::print.tmap(x, knit = TRUE, options = options, ...)  41. └─tmap:::step4_plot(...)  42. ├─...[]  43. └─data.table:::`[.data.table`(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'paper.Rmd' failed with diagnostics: attempt access index 4/4 in VECTOR_ELT --- failed re-building ‘paper.Rmd’ SUMMARY: processing the following file failed:   ‘paper.Rmd’ Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [3s/3s] OK
• checking HTML version of manual ... [0s/0s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 ERROR