• using R Under development (unstable) (2026-07-30 r90327)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-07-31 18:47:55 UTC
• checking for file ‘xegaPermGene/DESCRIPTION’ ... OK
• this is package ‘xegaPermGene’ version ‘1.0.0.1’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/1s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘xegaPermGene’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/0s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
• checking loading without being on the library search path ... [0s/0s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [3s/4s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking examples ... [0s/1s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [1s/2s] OK   Running ‘testthat.R’ [1s/1s]
• checking PDF version of manual ... [4s/6s] OK
• checking HTML version of manual ... [0s/1s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0CX1ZJ’ ‘~/tmp/scratch/Rtmp1RkC5M’   ‘~/tmp/scratch/Rtmp4BgdSr’ ‘~/tmp/scratch/Rtmp51gGqJ’   ‘~/tmp/scratch/Rtmp5B8Wpx’ ‘~/tmp/scratch/Rtmp5cFvD0’   ‘~/tmp/scratch/Rtmp5k7RiA’ ‘~/tmp/scratch/Rtmp6TzT2z’   ‘~/tmp/scratch/Rtmp8LaDG6’ ‘~/tmp/scratch/Rtmp8kBXQe’   ‘~/tmp/scratch/Rtmp8q16ut’ ‘~/tmp/scratch/RtmpBMAv9B’   ‘~/tmp/scratch/RtmpBWC42u’ ‘~/tmp/scratch/RtmpBZwg7g’   ‘~/tmp/scratch/RtmpBokIMs’ ‘~/tmp/scratch/RtmpBpNh7D’   ‘~/tmp/scratch/RtmpCiz9TO’ ‘~/tmp/scratch/RtmpCwKyfX’   ‘~/tmp/scratch/RtmpH5M0NI’ ‘~/tmp/scratch/RtmpHH0Vw1’   ‘~/tmp/scratch/RtmpHoz2Fv’ ‘~/tmp/scratch/RtmpJCXGi4’   ‘~/tmp/scratch/RtmpJfYwT5’ ‘~/tmp/scratch/RtmpKuREOQ’   ‘~/tmp/scratch/RtmpL099gK’ ‘~/tmp/scratch/RtmpLFjs7H’   ‘~/tmp/scratch/RtmpMFcIw0’ ‘~/tmp/scratch/RtmpMjt3xL’   ‘~/tmp/scratch/RtmpN6nVKO’ ‘~/tmp/scratch/RtmpO5v7PD’   ‘~/tmp/scratch/RtmpP642b5’ ‘~/tmp/scratch/RtmpPXZ5kC’   ‘~/tmp/scratch/RtmpQmSk67’ ‘~/tmp/scratch/RtmpQmlNmz’   ‘~/tmp/scratch/RtmpRuend4’ ‘~/tmp/scratch/RtmpSQU2rY’   ‘~/tmp/scratch/RtmpTPYLbX’ ‘~/tmp/scratch/RtmpTmlygn’   ‘~/tmp/scratch/RtmpUvQhYc’ ‘~/tmp/scratch/RtmpVQL3E0’   ‘~/tmp/scratch/RtmpVhTExs’ ‘~/tmp/scratch/RtmpVrtVqg’   ‘~/tmp/scratch/RtmpWEihh8’ ‘~/tmp/scratch/RtmpYH2KID’   ‘~/tmp/scratch/RtmpYpAMiw’ ‘~/tmp/scratch/RtmpafF7Rl’   ‘~/tmp/scratch/RtmpbdIFok’ ‘~/tmp/scratch/RtmpblsXHM’   ‘~/tmp/scratch/Rtmpbz9Jna’ ‘~/tmp/scratch/Rtmpc9VAeJ’   ‘~/tmp/scratch/RtmpdqgJza’ ‘~/tmp/scratch/RtmpeIxeOr’   ‘~/tmp/scratch/RtmpeJ80Q2’ ‘~/tmp/scratch/RtmpeadthY’   ‘~/tmp/scratch/RtmpfA9kie’ ‘~/tmp/scratch/Rtmpg0wUkB’   ‘~/tmp/scratch/RtmpgBcKU2’ ‘~/tmp/scratch/RtmpgWqKuD’   ‘~/tmp/scratch/Rtmpgrxp6y’ ‘~/tmp/scratch/Rtmph8Wc8V’   ‘~/tmp/scratch/RtmphsWAgD’ ‘~/tmp/scratch/Rtmpj2cN9X’   ‘~/tmp/scratch/RtmpjeL8RI’ ‘~/tmp/scratch/Rtmpl02Rte’   ‘~/tmp/scratch/RtmplwErkW’ ‘~/tmp/scratch/RtmpmMXwXM’   ‘~/tmp/scratch/RtmpnBW1wf’ ‘~/tmp/scratch/RtmpoCisEg’   ‘~/tmp/scratch/RtmpoDDYue’ ‘~/tmp/scratch/RtmpptAT8Z’   ‘~/tmp/scratch/RtmprQWdLW’ ‘~/tmp/scratch/RtmprY1VNZ’   ‘~/tmp/scratch/RtmpryAL3T’ ‘~/tmp/scratch/Rtmpsp6PYD’   ‘~/tmp/scratch/Rtmpt5MO3c’ ‘~/tmp/scratch/RtmpuD3Jpo’   ‘~/tmp/scratch/RtmpuLEqrT’ ‘~/tmp/scratch/RtmpuMSkV2’   ‘~/tmp/scratch/RtmpuoJgUb’ ‘~/tmp/scratch/RtmpvjzHQ9’   ‘~/tmp/scratch/RtmpvusRHV’ ‘~/tmp/scratch/RtmpwOTkyH’   ‘~/tmp/scratch/RtmpwVER2y’ ‘~/tmp/scratch/RtmpxB0zkS’   ‘~/tmp/scratch/RtmpyRiTm9’ ‘~/tmp/scratch/RtmpyaynAX’   ‘~/tmp/scratch/RtmpylmxiC’ ‘~/tmp/scratch/RtmpzugM1s’   ‘~/tmp/scratch/cc3RFrzf.s’   ‘~/tmp/scratch/quarto-session3ce1451c879b6f52’   ‘~/tmp/scratch/xvfb-run.5aHmKe’ ‘~/tmp/scratch/xvfb-run.7oEZRF’   ‘~/tmp/scratch/xvfb-run.8yPKat’ ‘~/tmp/scratch/xvfb-run.9ykLUH’   ‘~/tmp/scratch/xvfb-run.C3eMAk’ ‘~/tmp/scratch/xvfb-run.ESVwGQ’   ‘~/tmp/scratch/xvfb-run.EjxZ2B’ ‘~/tmp/scratch/xvfb-run.HbkVOY’   ‘~/tmp/scratch/xvfb-run.PVV4zv’ ‘~/tmp/scratch/xvfb-run.PwGQse’   ‘~/tmp/scratch/xvfb-run.U2bOZx’ ‘~/tmp/scratch/xvfb-run.bB4DUZ’   ‘~/tmp/scratch/xvfb-run.bdSu7K’ ‘~/tmp/scratch/xvfb-run.hUhtzw’   ‘~/tmp/scratch/xvfb-run.jaSG68’ ‘~/tmp/scratch/xvfb-run.kAi2ca’   ‘~/tmp/scratch/xvfb-run.n5FIUj’ ‘~/tmp/scratch/xvfb-run.oGQVDA’   ‘~/tmp/scratch/xvfb-run.pcfOJS’ ‘~/tmp/scratch/xvfb-run.r2Ynb3’   ‘~/tmp/scratch/xvfb-run.tol3ht’ ‘~/tmp/scratch/xvfb-run.tx9ikc’   ‘~/.cache/quarto/sass/sass.kv-shm’ ‘~/.cache/quarto/sass/sass.kv-wal’
• DONE

Status: 1 NOTE