• using R Under development (unstable) (2026-07-31 r90332)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-08-01 18:48:19 UTC
• checking for file ‘xegaPermGene/DESCRIPTION’ ... OK
• this is package ‘xegaPermGene’ version ‘1.0.0.1’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/1s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘xegaPermGene’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/0s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
• checking loading without being on the library search path ... [0s/0s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [3s/4s] OK
• checking Rd files ... [0s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking examples ... [0s/1s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [1s/2s] OK   Running ‘testthat.R’ [1s/1s]
• checking PDF version of manual ... [4s/5s] OK
• checking HTML version of manual ... [0s/1s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0daHrP’ ‘~/tmp/scratch/Rtmp0fzKrk’   ‘~/tmp/scratch/Rtmp0v1MuX’ ‘~/tmp/scratch/Rtmp1JLecB’   ‘~/tmp/scratch/Rtmp1QwSwv’ ‘~/tmp/scratch/Rtmp1sp34M’   ‘~/tmp/scratch/Rtmp25Le1k’ ‘~/tmp/scratch/Rtmp2wJy0i’   ‘~/tmp/scratch/Rtmp53R4zC’ ‘~/tmp/scratch/Rtmp59pxgX’   ‘~/tmp/scratch/Rtmp6FApI0’ ‘~/tmp/scratch/Rtmp7V216M’   ‘~/tmp/scratch/Rtmp8bEhbu’ ‘~/tmp/scratch/Rtmp8biRod’   ‘~/tmp/scratch/Rtmp8uQMsO’ ‘~/tmp/scratch/Rtmp9Ho68a’   ‘~/tmp/scratch/RtmpAJsYNl’ ‘~/tmp/scratch/RtmpAcliM0’   ‘~/tmp/scratch/RtmpAiPMff’ ‘~/tmp/scratch/RtmpBQH7MF’   ‘~/tmp/scratch/RtmpBbapoS’ ‘~/tmp/scratch/RtmpBiONQc’   ‘~/tmp/scratch/RtmpBkuNNF’ ‘~/tmp/scratch/RtmpCDiPiT’   ‘~/tmp/scratch/RtmpD00dr7’ ‘~/tmp/scratch/RtmpDsJE0a’   ‘~/tmp/scratch/RtmpFCu5Dn’ ‘~/tmp/scratch/RtmpGwfNiS’   ‘~/tmp/scratch/RtmpHifeXG’ ‘~/tmp/scratch/RtmpJOSGjV’   ‘~/tmp/scratch/RtmpLbiKbL’ ‘~/tmp/scratch/RtmpMLHD9x’   ‘~/tmp/scratch/RtmpMSQ7xn’ ‘~/tmp/scratch/RtmpMnpHB7’   ‘~/tmp/scratch/RtmpORFCHR’ ‘~/tmp/scratch/RtmpQSxfVH’   ‘~/tmp/scratch/RtmpR2dD0V’ ‘~/tmp/scratch/RtmpRpuLDD’   ‘~/tmp/scratch/RtmpRsclKt’ ‘~/tmp/scratch/RtmpTZz1mF’   ‘~/tmp/scratch/RtmpTvsOW9’ ‘~/tmp/scratch/RtmpU6O0cQ’   ‘~/tmp/scratch/RtmpVHLq1V’ ‘~/tmp/scratch/RtmpVjCgdS’   ‘~/tmp/scratch/RtmpWKdXU0’ ‘~/tmp/scratch/RtmpXfb0d8’   ‘~/tmp/scratch/RtmpY5Z9C2’ ‘~/tmp/scratch/RtmpYtTyYo’   ‘~/tmp/scratch/RtmpaUM07I’ ‘~/tmp/scratch/Rtmpb3WDmC’   ‘~/tmp/scratch/RtmpbdWU9l’ ‘~/tmp/scratch/RtmpbiezEC’   ‘~/tmp/scratch/RtmpcXHUgB’ ‘~/tmp/scratch/RtmpcZ8Dlz’   ‘~/tmp/scratch/RtmpdnbAuT’ ‘~/tmp/scratch/RtmpdwWlgz’   ‘~/tmp/scratch/Rtmpdy9Vt2’ ‘~/tmp/scratch/RtmpeaZL35’   ‘~/tmp/scratch/RtmpgpVlAP’ ‘~/tmp/scratch/RtmphTqWUB’   ‘~/tmp/scratch/Rtmphh1F87’ ‘~/tmp/scratch/RtmpiSZqcU’   ‘~/tmp/scratch/RtmpjG2IZt’ ‘~/tmp/scratch/RtmpjPJkbK’   ‘~/tmp/scratch/RtmpjbGFGn’ ‘~/tmp/scratch/RtmpkJLxGp’   ‘~/tmp/scratch/RtmpmZ5aPe’ ‘~/tmp/scratch/RtmpnAS2JI’   ‘~/tmp/scratch/RtmpnOuLsm’ ‘~/tmp/scratch/Rtmpnoxs5o’   ‘~/tmp/scratch/RtmpoATODD’ ‘~/tmp/scratch/RtmpoBQ1Gt’   ‘~/tmp/scratch/RtmpoP3Gyu’ ‘~/tmp/scratch/RtmpoPKBL6’   ‘~/tmp/scratch/Rtmpoikoeh’ ‘~/tmp/scratch/RtmppUkOkV’   ‘~/tmp/scratch/RtmppfJ0as’ ‘~/tmp/scratch/RtmppjF2gN’   ‘~/tmp/scratch/RtmpqFdzYk’ ‘~/tmp/scratch/Rtmpqn6fXa’   ‘~/tmp/scratch/RtmprXv5qC’ ‘~/tmp/scratch/RtmprlWBm7’   ‘~/tmp/scratch/RtmpsiLp4N’ ‘~/tmp/scratch/Rtmpt91zef’   ‘~/tmp/scratch/RtmptctyT3’ ‘~/tmp/scratch/Rtmpv5hgpr’   ‘~/tmp/scratch/RtmpvUzsZR’ ‘~/tmp/scratch/Rtmpx68BDu’   ‘~/tmp/scratch/Rtmpyvbjdo’ ‘~/tmp/scratch/ccwstOEa.s’   ‘~/tmp/scratch/xvfb-run.0cVqSi’ ‘~/tmp/scratch/xvfb-run.2bVKS6’   ‘~/tmp/scratch/xvfb-run.2e7TyL’ ‘~/tmp/scratch/xvfb-run.6OqWPv’   ‘~/tmp/scratch/xvfb-run.9WC6ti’ ‘~/tmp/scratch/xvfb-run.9t3iRO’   ‘~/tmp/scratch/xvfb-run.A7DLMj’ ‘~/tmp/scratch/xvfb-run.AyAi6q’   ‘~/tmp/scratch/xvfb-run.L1ho5k’ ‘~/tmp/scratch/xvfb-run.Lxup6y’   ‘~/tmp/scratch/xvfb-run.NjL6np’ ‘~/tmp/scratch/xvfb-run.PqdWJc’   ‘~/tmp/scratch/xvfb-run.aFw8U7’ ‘~/tmp/scratch/xvfb-run.d9MKPz’   ‘~/tmp/scratch/xvfb-run.kbn9KL’ ‘~/tmp/scratch/xvfb-run.oH2yEL’   ‘~/tmp/scratch/xvfb-run.puX4sd’ ‘~/tmp/scratch/xvfb-run.qF1jrb’   ‘~/tmp/scratch/xvfb-run.uBly2x’ ‘~/tmp/scratch/xvfb-run.vLdOgy’   ‘~/tmp/scratch/xvfb-run.vunS7g’ ‘~/tmp/scratch/xvfb-run.yMj8dT’
• DONE

Status: 1 NOTE