• using R Under development (unstable) (2026-07-30 r90327)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-07-31 18:47:48 UTC
• checking for file ‘xegaGaGene/DESCRIPTION’ ... OK
• this is package ‘xegaGaGene’ version ‘1.0.0.6’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/1s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘xegaGaGene’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/1s] OK
• checking loading without being on the library search path ... [0s/0s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [5s/7s] OK
• checking Rd files ... [0s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking examples ... [1s/1s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [1s/2s] OK   Running ‘testthat.R’ [1s/1s]
• checking PDF version of manual ... [6s/8s] OK
• checking HTML version of manual ... [1s/2s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0HwsaM’ ‘~/tmp/scratch/Rtmp1RkC5M’   ‘~/tmp/scratch/Rtmp2R7pqn’ ‘~/tmp/scratch/Rtmp2YiFtE’   ‘~/tmp/scratch/Rtmp4BgdSr’ ‘~/tmp/scratch/Rtmp4bF70u’   ‘~/tmp/scratch/Rtmp51gGqJ’ ‘~/tmp/scratch/Rtmp5B8Wpx’   ‘~/tmp/scratch/Rtmp5hkI8T’ ‘~/tmp/scratch/Rtmp5kTZRf’   ‘~/tmp/scratch/Rtmp7Uc0te’ ‘~/tmp/scratch/Rtmp8kBXQe’   ‘~/tmp/scratch/Rtmp8q16ut’ ‘~/tmp/scratch/RtmpAyaPxR’   ‘~/tmp/scratch/RtmpBMAv9B’ ‘~/tmp/scratch/RtmpBWC42u’   ‘~/tmp/scratch/RtmpBZwg7g’ ‘~/tmp/scratch/RtmpBchiTu’   ‘~/tmp/scratch/RtmpBjsX2t’ ‘~/tmp/scratch/RtmpBpNh7D’   ‘~/tmp/scratch/RtmpE9cJI0’ ‘~/tmp/scratch/RtmpEQ3aWq’   ‘~/tmp/scratch/RtmpEwU0U7’ ‘~/tmp/scratch/RtmpGBX6FA’   ‘~/tmp/scratch/RtmpH5M0NI’ ‘~/tmp/scratch/RtmpHH0Vw1’   ‘~/tmp/scratch/RtmpJCXGi4’ ‘~/tmp/scratch/RtmpJfYwT5’   ‘~/tmp/scratch/RtmpJzE3SO’ ‘~/tmp/scratch/RtmpL099gK’   ‘~/tmp/scratch/RtmpLLqqHx’ ‘~/tmp/scratch/RtmpMNBWcw’   ‘~/tmp/scratch/RtmpMe2aIx’ ‘~/tmp/scratch/RtmpMjt3xL’   ‘~/tmp/scratch/RtmpN6nVKO’ ‘~/tmp/scratch/RtmpNC9FEz’   ‘~/tmp/scratch/RtmpO0S86F’ ‘~/tmp/scratch/RtmpQKO38Z’   ‘~/tmp/scratch/RtmpQmSk67’ ‘~/tmp/scratch/RtmpQmlNmz’   ‘~/tmp/scratch/RtmpSIBqG6’ ‘~/tmp/scratch/RtmpSPCzun’   ‘~/tmp/scratch/RtmpSTi2RL’ ‘~/tmp/scratch/RtmpTPYLbX’   ‘~/tmp/scratch/RtmpUfIghk’ ‘~/tmp/scratch/RtmpVQL3E0’   ‘~/tmp/scratch/RtmpVhTExs’ ‘~/tmp/scratch/RtmpVrtVqg’   ‘~/tmp/scratch/RtmpWEihh8’ ‘~/tmp/scratch/RtmpXbKnYV’   ‘~/tmp/scratch/RtmpY5tNuz’ ‘~/tmp/scratch/RtmpYpAMiw’   ‘~/tmp/scratch/RtmpZ9sfs8’ ‘~/tmp/scratch/Rtmpa00aww’   ‘~/tmp/scratch/Rtmpb08WvF’ ‘~/tmp/scratch/RtmpbdIFok’   ‘~/tmp/scratch/Rtmpbz9Jna’ ‘~/tmp/scratch/RtmpdOpIbr’   ‘~/tmp/scratch/RtmpeIxeOr’ ‘~/tmp/scratch/RtmpeadthY’   ‘~/tmp/scratch/RtmpfA9kie’ ‘~/tmp/scratch/Rtmpg0wUkB’   ‘~/tmp/scratch/RtmpgQMsDH’ ‘~/tmp/scratch/RtmpgWqKuD’   ‘~/tmp/scratch/Rtmpgrxp6y’ ‘~/tmp/scratch/Rtmph8Wc8V’   ‘~/tmp/scratch/Rtmpj8z98z’ ‘~/tmp/scratch/RtmpjeL8RI’   ‘~/tmp/scratch/Rtmpjximqp’ ‘~/tmp/scratch/RtmpkVltNZ’   ‘~/tmp/scratch/Rtmpkj8O4F’ ‘~/tmp/scratch/RtmpkjoFDK’   ‘~/tmp/scratch/RtmplQX8MA’ ‘~/tmp/scratch/RtmplVeToN’   ‘~/tmp/scratch/RtmpluFfo8’ ‘~/tmp/scratch/RtmpmHJmm6’   ‘~/tmp/scratch/RtmpmMXwXM’ ‘~/tmp/scratch/RtmpmfQHGa’   ‘~/tmp/scratch/RtmpmxyFJU’ ‘~/tmp/scratch/RtmpnBW1wf’   ‘~/tmp/scratch/RtmpnuhUmY’ ‘~/tmp/scratch/Rtmpnv0Bau’   ‘~/tmp/scratch/Rtmpo3bzhz’ ‘~/tmp/scratch/RtmpouF4XS’   ‘~/tmp/scratch/Rtmpoy256f’ ‘~/tmp/scratch/RtmpptAT8Z’   ‘~/tmp/scratch/RtmpqJpJKS’ ‘~/tmp/scratch/RtmpqyY6Fa’   ‘~/tmp/scratch/Rtmpr1yFKY’ ‘~/tmp/scratch/RtmpsJoE9G’   ‘~/tmp/scratch/Rtmpsp6PYD’ ‘~/tmp/scratch/RtmpuoJgUb’   ‘~/tmp/scratch/RtmpvWepCK’ ‘~/tmp/scratch/RtmpvusRHV’   ‘~/tmp/scratch/RtmpwOTkyH’ ‘~/tmp/scratch/RtmpwQfw9v’   ‘~/tmp/scratch/RtmpwVER2y’ ‘~/tmp/scratch/RtmpxB0zkS’   ‘~/tmp/scratch/RtmpxTWWTQ’ ‘~/tmp/scratch/RtmpxUviUt’   ‘~/tmp/scratch/RtmpyRiTm9’ ‘~/tmp/scratch/RtmpylmxiC’   ‘~/tmp/scratch/RtmpzE7T6C’ ‘~/tmp/scratch/cc3RFrzf.s’   ‘~/tmp/scratch/quarto-session402c60513b31966c’   ‘~/tmp/scratch/xvfb-run.5aHmKe’ ‘~/tmp/scratch/xvfb-run.7oEZRF’   ‘~/tmp/scratch/xvfb-run.8yPKat’ ‘~/tmp/scratch/xvfb-run.9FibQr’   ‘~/tmp/scratch/xvfb-run.9ykLUH’ ‘~/tmp/scratch/xvfb-run.ASTx5t’   ‘~/tmp/scratch/xvfb-run.C3eMAk’ ‘~/tmp/scratch/xvfb-run.E0y0fY’   ‘~/tmp/scratch/xvfb-run.ESVwGQ’ ‘~/tmp/scratch/xvfb-run.EjxZ2B’   ‘~/tmp/scratch/xvfb-run.HbkVOY’ ‘~/tmp/scratch/xvfb-run.KvEUD8’   ‘~/tmp/scratch/xvfb-run.P7MhbF’ ‘~/tmp/scratch/xvfb-run.PVV4zv’   ‘~/tmp/scratch/xvfb-run.PwGQse’ ‘~/tmp/scratch/xvfb-run.U2bOZx’   ‘~/tmp/scratch/xvfb-run.WoP1w8’ ‘~/tmp/scratch/xvfb-run.bB4DUZ’   ‘~/tmp/scratch/xvfb-run.bdSu7K’ ‘~/tmp/scratch/xvfb-run.hUhtzw’   ‘~/tmp/scratch/xvfb-run.jaSG68’ ‘~/tmp/scratch/xvfb-run.kAi2ca’   ‘~/tmp/scratch/xvfb-run.lE9OFs’ ‘~/tmp/scratch/xvfb-run.n5FIUj’   ‘~/tmp/scratch/xvfb-run.oGQVDA’ ‘~/tmp/scratch/xvfb-run.pcfOJS’   ‘~/tmp/scratch/xvfb-run.r2Ynb3’ ‘~/tmp/scratch/xvfb-run.tol3ht’   ‘~/tmp/scratch/xvfb-run.tx9ikc’ ‘~/tmp/scratch/xvfb-run.yKYh2x’
• DONE

Status: 1 NOTE