• using R Under development (unstable) (2026-07-30 r90327)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-07-31 18:44:12 UTC
• checking for file ‘weightedScores/DESCRIPTION’ ... OK
• this is package ‘weightedScores’ version ‘0.9.5.3’
• checking CRAN incoming feasibility ... [1s/1s] NOTE Maintainer: ‘Aristidis K. Nikoloulopoulos <a.nikoloulopoulos@uea.ac.uk>’ The Description field contains   <arXiv:1510.07376>. Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘weightedScores’ can be installed ... OK See the install log for details.
• used C compiler: ‘gcc-16 (Debian 16.1.0-3) 16.1.0’
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/0s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
• checking loading without being on the library search path ... [0s/0s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [9s/14s] OK
• checking Rd files ... [0s/1s] NOTE checkRd: (-1) CLIC.Rd:149: Lost braces    149 | Composite likelihood {E}{M} algorithm with applications to        | ^
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking examples ... [6s/7s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [36s/42s] OK   Running ‘application_examples.R’ [36s/42s]
• checking PDF version of manual ... [6s/8s] OK
• checking HTML version of manual ... [2s/3s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0YuDt7’ ‘~/tmp/scratch/Rtmp0fsSAj’   ‘~/tmp/scratch/Rtmp12hcnL’ ‘~/tmp/scratch/Rtmp1OTV0O’   ‘~/tmp/scratch/Rtmp1fDQac’ ‘~/tmp/scratch/Rtmp2RdosC’   ‘~/tmp/scratch/Rtmp3QGlhP’ ‘~/tmp/scratch/Rtmp3hm0eP’   ‘~/tmp/scratch/Rtmp4LdEpA’ ‘~/tmp/scratch/Rtmp4bmzPu’   ‘~/tmp/scratch/Rtmp4hfFAZ’ ‘~/tmp/scratch/Rtmp4yjFjs’   ‘~/tmp/scratch/Rtmp50rNSF’ ‘~/tmp/scratch/Rtmp5eXSqo’   ‘~/tmp/scratch/Rtmp63oFRB’ ‘~/tmp/scratch/Rtmp6VLS7J’   ‘~/tmp/scratch/Rtmp6zz96p’ ‘~/tmp/scratch/Rtmp78VQ8X’   ‘~/tmp/scratch/Rtmp7Hnypl’ ‘~/tmp/scratch/Rtmp7VD55J’   ‘~/tmp/scratch/Rtmp7dSglD’ ‘~/tmp/scratch/Rtmp8YoWha’   ‘~/tmp/scratch/Rtmp8wXO5r’ ‘~/tmp/scratch/Rtmp9ZzrS5’   ‘~/tmp/scratch/Rtmp9gV4Oc’ ‘~/tmp/scratch/RtmpB9TniN’   ‘~/tmp/scratch/RtmpBNImtW’ ‘~/tmp/scratch/RtmpBjQ8iq’   ‘~/tmp/scratch/RtmpCTXKEc’ ‘~/tmp/scratch/RtmpChltM3’   ‘~/tmp/scratch/RtmpDN0m8m’ ‘~/tmp/scratch/RtmpDQSIej’   ‘~/tmp/scratch/RtmpDw9ek8’ ‘~/tmp/scratch/RtmpELzQ5G’   ‘~/tmp/scratch/RtmpEil7Tj’ ‘~/tmp/scratch/RtmpF8TGfe’   ‘~/tmp/scratch/RtmpFbwzUg’ ‘~/tmp/scratch/RtmpG9J2d9’   ‘~/tmp/scratch/RtmpGCsZW2’ ‘~/tmp/scratch/RtmpGWZLWz’   ‘~/tmp/scratch/RtmpGczhES’ ‘~/tmp/scratch/RtmpHB6PKm’   ‘~/tmp/scratch/RtmpHXHmzm’ ‘~/tmp/scratch/RtmpHleYsB’   ‘~/tmp/scratch/RtmpHoVkkK’ ‘~/tmp/scratch/RtmpIa8nYV’   ‘~/tmp/scratch/RtmpIkKFdp’ ‘~/tmp/scratch/RtmpJlkj6l’   ‘~/tmp/scratch/RtmpJnYuns’ ‘~/tmp/scratch/RtmpKRMSk2’   ‘~/tmp/scratch/RtmpKfh7mj’ ‘~/tmp/scratch/RtmpKrjXzj’   ‘~/tmp/scratch/RtmpLeGuHT’ ‘~/tmp/scratch/RtmpLm6E52’   ‘~/tmp/scratch/RtmpLn1Xvm’ ‘~/tmp/scratch/RtmpLwHsv4’   ‘~/tmp/scratch/RtmpM2EQqT’ ‘~/tmp/scratch/RtmpM8XZmY’   ‘~/tmp/scratch/RtmpMDPfMa’ ‘~/tmp/scratch/RtmpMVMGuX’   ‘~/tmp/scratch/RtmpMuYt4j’ ‘~/tmp/scratch/RtmpNYQY8O’   ‘~/tmp/scratch/RtmpNZI42b’ ‘~/tmp/scratch/RtmpORgxc0’   ‘~/tmp/scratch/RtmpP2LQix’ ‘~/tmp/scratch/RtmpPDI9XG’   ‘~/tmp/scratch/RtmpPKANKA’ ‘~/tmp/scratch/RtmpPeshV3’   ‘~/tmp/scratch/RtmpPtUbQ8’ ‘~/tmp/scratch/RtmpPyrRB2’   ‘~/tmp/scratch/RtmpRCDvHl’ ‘~/tmp/scratch/RtmpRor9AH’   ‘~/tmp/scratch/RtmpRtL9mX’ ‘~/tmp/scratch/RtmpRwEb2r’   ‘~/tmp/scratch/RtmpSMW832’ ‘~/tmp/scratch/RtmpT1gcee’   ‘~/tmp/scratch/RtmpT6qh39’ ‘~/tmp/scratch/RtmpTKED5h’   ‘~/tmp/scratch/RtmpU9RzGK’ ‘~/tmp/scratch/RtmpUlaDBY’   ‘~/tmp/scratch/RtmpVEPCc2’ ‘~/tmp/scratch/RtmpVLauYU’   ‘~/tmp/scratch/RtmpX3d2tg’ ‘~/tmp/scratch/RtmpXUlpHh’   ‘~/tmp/scratch/RtmpYLbAco’ ‘~/tmp/scratch/RtmpZGqD1M’   ‘~/tmp/scratch/RtmpZJzhAu’ ‘~/tmp/scratch/RtmpZN8N0k’   ‘~/tmp/scratch/RtmpZPEfcd’ ‘~/tmp/scratch/RtmpZbI6P5’   ‘~/tmp/scratch/RtmpZcXuUs’ ‘~/tmp/scratch/RtmpZqEDyE’   ‘~/tmp/scratch/RtmpZzSbFn’ ‘~/tmp/scratch/RtmpaXmJ2r’   ‘~/tmp/scratch/RtmpamdDgC’ ‘~/tmp/scratch/Rtmpb4T2gR’   ‘~/tmp/scratch/RtmpboOGuS’ ‘~/tmp/scratch/RtmpcH6YzC’   ‘~/tmp/scratch/RtmpcMQEXn’ ‘~/tmp/scratch/RtmpcSIgih’   ‘~/tmp/scratch/RtmpcfpqIQ’ ‘~/tmp/scratch/RtmpchJTkj’   ‘~/tmp/scratch/RtmpdKrK2J’ ‘~/tmp/scratch/Rtmpe5GsrS’   ‘~/tmp/scratch/RtmpeZVUAu’ ‘~/tmp/scratch/RtmpeafAd0’   ‘~/tmp/scratch/RtmpebUkTt’ ‘~/tmp/scratch/RtmpebwBS5’   ‘~/tmp/scratch/Rtmpejofor’ ‘~/tmp/scratch/Rtmpev0Ntn’   ‘~/tmp/scratch/RtmpfEtSam’ ‘~/tmp/scratch/RtmpfjM6ax’   ‘~/tmp/scratch/RtmpfnYPGq’ ‘~/tmp/scratch/RtmpgGksev’   ‘~/tmp/scratch/RtmpgXbZFZ’ ‘~/tmp/scratch/Rtmpgb4ZR8’   ‘~/tmp/scratch/RtmpgtAUQF’ ‘~/tmp/scratch/Rtmph8g3sH’   ‘~/tmp/scratch/RtmphKxV1N’ ‘~/tmp/scratch/RtmphkRLTE’   ‘~/tmp/scratch/Rtmphsg6eT’ ‘~/tmp/scratch/RtmpjIUGKH’   ‘~/tmp/scratch/RtmpjS1NaD’ ‘~/tmp/scratch/RtmpkV1sWO’   ‘~/tmp/scratch/RtmpkVcDlx’ ‘~/tmp/scratch/Rtmpkwnicl’   ‘~/tmp/scratch/RtmplGEHTz’ ‘~/tmp/scratch/RtmplJhs0M’   ‘~/tmp/scratch/RtmplOhSDs’ ‘~/tmp/scratch/RtmplXQvk4’   ‘~/tmp/scratch/Rtmpm27YCW’ ‘~/tmp/scratch/RtmpmGwYRZ’   ‘~/tmp/scratch/RtmpmQECcf’ ‘~/tmp/scratch/RtmpnLoR5y’   ‘~/tmp/scratch/RtmpnVSpc1’ ‘~/tmp/scratch/RtmpoI915B’   ‘~/tmp/scratch/RtmpoRewDh’ ‘~/tmp/scratch/Rtmpod440S’   ‘~/tmp/scratch/RtmpozRqdi’ ‘~/tmp/scratch/RtmppxoCkx’   ‘~/tmp/scratch/RtmpqG9Qvu’ ‘~/tmp/scratch/RtmprDqc4L’   ‘~/tmp/scratch/RtmprOPPBo’ ‘~/tmp/scratch/RtmprUalKO’   ‘~/tmp/scratch/RtmprW4yJa’ ‘~/tmp/scratch/Rtmprt6gYI’   ‘~/tmp/scratch/Rtmps6ZIWI’ ‘~/tmp/scratch/RtmpsTbjqp’   ‘~/tmp/scratch/RtmpsWgR5g’ ‘~/tmp/scratch/Rtmpt3Xp0d’   ‘~/tmp/scratch/RtmptuG1xn’ ‘~/tmp/scratch/RtmptyqNAi’   ‘~/tmp/scratch/RtmpuB3V8o’ ‘~/tmp/scratch/RtmpuHQdUe’   ‘~/tmp/scratch/RtmpuKLD3Z’ ‘~/tmp/scratch/RtmpvdWIws’   ‘~/tmp/scratch/RtmpvkRpOr’ ‘~/tmp/scratch/RtmpvqTExp’   ‘~/tmp/scratch/Rtmpw8AxQC’ ‘~/tmp/scratch/RtmpxTvD86’   ‘~/tmp/scratch/RtmpxtBSyk’ ‘~/tmp/scratch/RtmpyGTZLf’   ‘~/tmp/scratch/RtmpyJTc4H’ ‘~/tmp/scratch/Rtmpz3Rw7I’   ‘~/tmp/scratch/RtmpzZdAga’ ‘~/tmp/scratch/xvfb-run.1WHk1d’   ‘~/tmp/scratch/xvfb-run.1x5NVM’ ‘~/tmp/scratch/xvfb-run.2Q5YEI’   ‘~/tmp/scratch/xvfb-run.36ALXQ’ ‘~/tmp/scratch/xvfb-run.3GPR8h’   ‘~/tmp/scratch/xvfb-run.4dEoHb’ ‘~/tmp/scratch/xvfb-run.5kN62S’   ‘~/tmp/scratch/xvfb-run.9DZTX2’ ‘~/tmp/scratch/xvfb-run.9zoxSS’   ‘~/tmp/scratch/xvfb-run.CgAFru’ ‘~/tmp/scratch/xvfb-run.ChxmJ8’   ‘~/tmp/scratch/xvfb-run.Eyti0x’ ‘~/tmp/scratch/xvfb-run.F0r5W9’   ‘~/tmp/scratch/xvfb-run.FTxMS3’ ‘~/tmp/scratch/xvfb-run.FWzhLQ’   ‘~/tmp/scratch/xvfb-run.Hc4f43’ ‘~/tmp/scratch/xvfb-run.Jk2siY’   ‘~/tmp/scratch/xvfb-run.Kx1YET’ ‘~/tmp/scratch/xvfb-run.L41S34’   ‘~/tmp/scratch/xvfb-run.M6AY7W’ ‘~/tmp/scratch/xvfb-run.NTirio’   ‘~/tmp/scratch/xvfb-run.NYHBoC’ ‘~/tmp/scratch/xvfb-run.P1W2U5’   ‘~/tmp/scratch/xvfb-run.QcTUEw’ ‘~/tmp/scratch/xvfb-run.QqUGFN’   ‘~/tmp/scratch/xvfb-run.S7fAVW’ ‘~/tmp/scratch/xvfb-run.SnhAnx’   ‘~/tmp/scratch/xvfb-run.WJY5vJ’ ‘~/tmp/scratch/xvfb-run.XkGdwK’   ‘~/tmp/scratch/xvfb-run.ZogniL’ ‘~/tmp/scratch/xvfb-run.a2396T’   ‘~/tmp/scratch/xvfb-run.aQnTqS’ ‘~/tmp/scratch/xvfb-run.ai6vKx’   ‘~/tmp/scratch/xvfb-run.ajZocS’ ‘~/tmp/scratch/xvfb-run.bop2G6’   ‘~/tmp/scratch/xvfb-run.ctmfdE’ ‘~/tmp/scratch/xvfb-run.dZ14vV’   ‘~/tmp/scratch/xvfb-run.dpcR1o’ ‘~/tmp/scratch/xvfb-run.dqw24V’   ‘~/tmp/scratch/xvfb-run.eKcAwB’ ‘~/tmp/scratch/xvfb-run.esfVW9’   ‘~/tmp/scratch/xvfb-run.fIEPDN’ ‘~/tmp/scratch/xvfb-run.gyanPJ’   ‘~/tmp/scratch/xvfb-run.hLq1jn’ ‘~/tmp/scratch/xvfb-run.hkyCqH’   ‘~/tmp/scratch/xvfb-run.hz13xC’ ‘~/tmp/scratch/xvfb-run.n2GRYa’   ‘~/tmp/scratch/xvfb-run.neYeTH’ ‘~/tmp/scratch/xvfb-run.oQheiY’   ‘~/tmp/scratch/xvfb-run.q2jHZg’ ‘~/tmp/scratch/xvfb-run.qhN0aq’   ‘~/tmp/scratch/xvfb-run.qpsDue’ ‘~/tmp/scratch/xvfb-run.ry91gJ’   ‘~/tmp/scratch/xvfb-run.sFMewg’ ‘~/tmp/scratch/xvfb-run.vcjZVJ’   ‘~/tmp/scratch/xvfb-run.xWgFB4’
• DONE

Status: 3 NOTEs