* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’ * installing *source* package ‘vectra’ ... ** this is package ‘vectra’ version ‘0.12.3’ ** package ‘vectra’ successfully unpacked and MD5 sums checked ** using staged installation configure: using pre-vendored src/tdc/ ** libs using C compiler: ‘gcc-16 (Debian 16.2.0-1) 16.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpC2CUZ6/R.INSTALL14c7ae19931dd7/vectra/src' gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c agg_ops.c -o agg_ops.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c agg_spill.c -o agg_spill.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c array.c -o array.o array.c: In function ‘vec_validity_copy_bits’: array.c:181:13: warning: unused variable ‘src_bytes’ [-Wunused-variable] 181 | int64_t src_bytes = (src_off + n + 7) >> 3; | ^~~~~~~~~ gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c batch.c -o batch.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bed_scan.c -o bed_scan.o In function ‘bed_read_batch’, inlined from ‘bed_scan_next_batch’ at bed_scan.c:312:23: bed_scan.c:274:36: warning: ‘iv’ may be used uninitialized [-Wmaybe-uninitialized] 274 | arr.buf.i64[r] = iv; | ~~~~~~~~~~~~~~~^~~~ bed_scan.c: In function ‘bed_scan_next_batch’: bed_scan.c:268:25: note: ‘iv’ was declared here 268 | int64_t iv; | ^~ gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c block.c -o block.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c builder.c -o builder.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c byte_reader.c -o byte_reader.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c coerce.c -o coerce.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c collect.c -o collect.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c concat.c -o concat.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c csv_scan.c -o csv_scan.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c csv_write.c -o csv_write.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dropcol.c -o dropcol.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c edt.c -o edt.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c error.c -o error.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c expr.c -o expr.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c expr_datetime.c -o expr_datetime.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c expr_geom.c -o expr_geom.o expr_geom.c: In function ‘geom_measure’: expr_geom.c:92:17: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 92 | if (v < 0) return 0; *out = (double) v; return 1; } | ^~ expr_geom.c:92:38: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 92 | if (v < 0) return 0; *out = (double) v; return 1; } | ^ expr_geom.c:94:17: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 94 | if (v < 0) return 0; *out = (double) v; return 1; } | ^~ expr_geom.c:94:38: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 94 | if (v < 0) return 0; *out = (double) v; return 1; } | ^ gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c expr_seq.c -o expr_seq.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c expr_string.c -o expr_string.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c expr_vec.c -o expr_vec.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c fasta_scan.c -o fasta_scan.o fasta_scan.c:46:20: warning: ‘gbuf_str’ defined but not used [-Wunused-function] 46 | static const char *gbuf_str(GBuf *g) { | ^~~~~~~~ gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c feature_knn.c -o feature_knn.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c file_map.c -o file_map.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c filter.c -o filter.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c focal.c -o focal.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c fuzzy_join.c -o fuzzy_join.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c group_agg.c -o group_agg.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c group_topn.c -o group_topn.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c hash.c -o hash.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c interval_join.c -o interval_join.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c join.c -o join.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c join_partition.c -o join_partition.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c key_arena.c -o key_arena.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c key_snap.c -o key_snap.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c kmer.c -o kmer.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libgeos.c -o libgeos.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c limit.c -o limit.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c network.c -o network.o network.c:246:30: warning: ‘/*’ within comment [-Wcomment] 246 | /* pop the minimum into *outk/*outn; returns 0 when empty */ gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c node_rows.c -o node_rows.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c optimize.c -o optimize.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c project.c -o project.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c r_bridge.c -o r_bridge.o In function ‘parse_col_types’, inlined from ‘C_write_vtr’ at r_bridge.c:166:35: r_bridge.c:74:30: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized] 74 | overrides[i] = target; | ~~~~~~~~~~~~~^~~~~~~~ r_bridge.c: In function ‘C_write_vtr’: r_bridge.c:64:17: note: ‘target’ was declared here 64 | VecType target; | ^~~~~~ gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c r_bridge_core.c -o r_bridge_core.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c r_bridge_index.c -o r_bridge_index.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c r_bridge_io.c -o r_bridge_io.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c r_bridge_nodes.c -o r_bridge_nodes.o r_bridge_nodes.c: In function ‘C_fuzzy_join_node’: r_bridge_nodes.c:485:25: warning: ‘method’ may be used uninitialized [-Wmaybe-uninitialized] 485 | FuzzyJoinNode *fj = fuzzy_join_node_create( | ^~~~~~~~~~~~~~~~~~~~~~~ 486 | probe, build, | ~~~~~~~~~~~~~ 487 | probe_key, build_key, | ~~~~~~~~~~~~~~~~~~~~~ 488 | probe_block, build_block, | ~~~~~~~~~~~~~~~~~~~~~~~~~ 489 | method, max_dist, n_threads, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 | suffix_y, mem_budget, get_r_tempdir() | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 | ); | ~ r_bridge_nodes.c:474:17: note: ‘method’ was declared here 474 | FuzzyMethod method; | ^~~~~~ r_bridge_nodes.c: In function ‘C_interval_join_node’: r_bridge_nodes.c:558:28: warning: ‘kind’ may be used uninitialized [-Wmaybe-uninitialized] 558 | IntervalJoinNode *ij = interval_join_node_create( | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 559 | probe, build, | ~~~~~~~~~~~~~ 560 | p_start, p_end, b_start, b_end, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 | probe_block, build_block, | ~~~~~~~~~~~~~~~~~~~~~~~~~ 562 | kind, closed, n_threads, suffix_y, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 | mem_budget, get_r_tempdir() | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 | ); | ~ r_bridge_nodes.c:548:22: note: ‘kind’ was declared here 548 | IntervalJoinKind kind; | ^~~~ gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c r_bridge_raster.c -o r_bridge_raster.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rasterize.c -o rasterize.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rec_spill.c -o rec_spill.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rowid.c -o rowid.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c scalar_ops.c -o scalar_ops.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c scan.c -o scan.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c schema.c -o schema.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c sort.c -o sort.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c sql_scan.c -o sql_scan.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c sql_write.c -o sql_write.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c sqlite_format.c -o sqlite_format.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tiff_format.c -o tiff_format.o In function ‘tiff_lzw_encode’, inlined from ‘write_block’ at tiff_format.c:1858:13: tiff_format.c:1300:22: warning: ‘slot’ may be used uninitialized [-Wmaybe-uninitialized] 1300 | table[slot].prefix = prefix; | ^ tiff_format.c: In function ‘write_block’: tiff_format.c:1292:17: note: ‘slot’ was declared here 1292 | int slot; | ^~~~ gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tiff_scan.c -o tiff_scan.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tiff_write.c -o tiff_write.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c topn.c -o topn.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vec_raster.c -o vec_raster.o vec_raster.c: In function ‘vecr_cast_dtype_to_doubles’: vec_raster.c:138:9: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 138 | for (int64_t i = 0; i < n; ++i) dst[i] = (double)p[i]; break; } | ^~~ vec_raster.c:138:64: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 138 | for (int64_t i = 0; i < n; ++i) dst[i] = (double)p[i]; break; } | ^~~~~ vec_raster.c:140:9: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 140 | for (int64_t i = 0; i < n; ++i) dst[i] = (double)p[i]; break; } | ^~~ vec_raster.c:140:64: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 140 | for (int64_t i = 0; i < n; ++i) dst[i] = (double)p[i]; break; } | ^~~~~ vec_raster.c:142:9: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 142 | for (int64_t i = 0; i < n; ++i) dst[i] = (double)p[i]; break; } | ^~~ vec_raster.c:142:64: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 142 | for (int64_t i = 0; i < n; ++i) dst[i] = (double)p[i]; break; } | ^~~~~ vec_raster.c:144:9: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 144 | for (int64_t i = 0; i < n; ++i) dst[i] = (double)p[i]; break; } | ^~~ vec_raster.c:144:64: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 144 | for (int64_t i = 0; i < n; ++i) dst[i] = (double)p[i]; break; } | ^~~~~ vec_raster.c:146:9: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 146 | for (int64_t i = 0; i < n; ++i) dst[i] = (double)p[i]; break; } | ^~~ vec_raster.c:146:64: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 146 | for (int64_t i = 0; i < n; ++i) dst[i] = (double)p[i]; break; } | ^~~~~ vec_raster.c:148:9: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 148 | for (int64_t i = 0; i < n; ++i) dst[i] = (double)p[i]; break; } | ^~~ vec_raster.c:148:64: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 148 | for (int64_t i = 0; i < n; ++i) dst[i] = (double)p[i]; break; } | ^~~~~ vec_raster.c:150:9: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 150 | for (int64_t i = 0; i < n; ++i) dst[i] = (double)p[i]; break; } | ^~~ vec_raster.c:150:64: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 150 | for (int64_t i = 0; i < n; ++i) dst[i] = (double)p[i]; break; } | ^~~~~ vec_raster.c:152:9: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 152 | for (int64_t i = 0; i < n; ++i) dst[i] = (double)p[i]; break; } | ^~~ vec_raster.c:152:64: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 152 | for (int64_t i = 0; i < n; ++i) dst[i] = (double)p[i]; break; } | ^~~~~ vec_raster.c:154:9: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 154 | for (int64_t i = 0; i < n; ++i) dst[i] = (double)p[i]; break; } | ^~~ vec_raster.c:154:64: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 154 | for (int64_t i = 0; i < n; ++i) dst[i] = (double)p[i]; break; } | ^~~~~ vec_raster.c: In function ‘vecr_write_pixel_cube’: vec_raster.c:2429:25: warning: unused variable ‘n_pix’ [-Wunused-variable] 2429 | int64_t n_pix = tw * th; | ^~~~~ vec_raster.c: At top level: vec_raster.c:315:13: warning: ‘vecr_codec_for’ defined but not used [-Wunused-function] 315 | static void vecr_codec_for(VecrCodec *c, uint8_t dt) { | ^~~~~~~~~~~~~~ gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vtr1_tdc.c -o vtr1_tdc.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vtr_append.c -o vtr_append.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vtr_append_cols.c -o vtr_append_cols.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vtr_codec_tdc.c -o vtr_codec_tdc.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vtr_delete.c -o vtr_delete.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vtr_diff.c -o vtr_diff.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vtr_fileops.c -o vtr_fileops.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vtr_geos.c -o vtr_geos.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vtr_overlay.c -o vtr_overlay.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vtr_spatial.c -o vtr_spatial.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vtr_write.c -o vtr_write.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vtri.c -o vtri.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c warp.c -o warp.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c window.c -o window.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tdc/src/api/decode.c -o tdc/src/api/decode.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tdc/src/api/decode_dict.c -o tdc/src/api/decode_dict.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tdc/src/api/decode_ex.c -o tdc/src/api/decode_ex.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tdc/src/api/decode_impl.c -o tdc/src/api/decode_impl.o tdc/src/api/decode_impl.c: In function ‘driver_decode_block_impl’: tdc/src/api/decode_impl.c:345:21: warning: unused variable ‘tag’ [-Wunused-variable] 345 | const char *tag = timer_tag ? timer_tag : "dec "; | ^~~ tdc/src/api/decode_impl.c:344:16: warning: unused variable ‘raw_mib’ [-Wunused-variable] 344 | double raw_mib = (double)raw / (1024.0 * 1024.0); | ^~~~~~~ tdc/src/api/decode_impl.c:210:44: warning: variable ‘t_model’ set but not used [-Wunused-but-set-variable=] 210 | double t_entropy = 0.0, t_xform = 0.0, t_model = 0.0; | ^~~~~~~ tdc/src/api/decode_impl.c:210:29: warning: variable ‘t_xform’ set but not used [-Wunused-but-set-variable=] 210 | double t_entropy = 0.0, t_xform = 0.0, t_model = 0.0; | ^~~~~~~ tdc/src/api/decode_impl.c:210:12: warning: variable ‘t_entropy’ set but not used [-Wunused-but-set-variable=] 210 | double t_entropy = 0.0, t_xform = 0.0, t_model = 0.0; | ^~~~~~~~~ gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tdc/src/api/decode_into.c -o tdc/src/api/decode_into.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tdc/src/api/decode_varlen.c -o tdc/src/api/decode_varlen.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tdc/src/api/encode.c -o tdc/src/api/encode.o tdc/src/api/encode.c: In function ‘tdc_encode_block’: tdc/src/api/encode.c:289:17: warning: unused variable ‘raw_mib’ [-Wunused-variable] 289 | double raw_mib = (double)raw / (1024.0 * 1024.0); | ^~~~~~~ tdc/src/api/encode.c:126:42: warning: variable ‘t_entropy’ set but not used [-Wunused-but-set-variable=] 126 | double t_model = 0.0, t_xform = 0.0, t_entropy = 0.0; | ^~~~~~~~~ tdc/src/api/encode.c:126:27: warning: variable ‘t_xform’ set but not used [-Wunused-but-set-variable=] 126 | double t_model = 0.0, t_xform = 0.0, t_entropy = 0.0; | ^~~~~~~ tdc/src/api/encode.c:126:12: warning: variable ‘t_model’ set but not used [-Wunused-but-set-variable=] 126 | double t_model = 0.0, t_xform = 0.0, t_entropy = 0.0; | ^~~~~~~ gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tdc/src/api/pushpull_decode.c -o tdc/src/api/pushpull_decode.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tdc/src/api/pushpull_encode.c -o tdc/src/api/pushpull_encode.o tdc/src/api/pushpull_encode.c:66:14: warning: ‘pp_alloc’ defined but not used [-Wunused-function] 66 | static void *pp_alloc(tdc_pushpull_encoder *e, void *p, size_t sz) { | ^~~~~~~~ gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tdc/src/api/stream_decode.c -o tdc/src/api/stream_decode.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tdc/src/api/stream_encode.c -o tdc/src/api/stream_encode.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tdc/src/core/arena.c -o tdc/src/core/arena.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tdc/src/core/block.c -o tdc/src/core/block.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tdc/src/core/decode_profile.c -o tdc/src/core/decode_profile.o tdc/src/core/decode_profile.c: In function ‘tdc_dp_dump’: tdc/src/core/decode_profile.c:54:16: warning: unused variable ‘cps’ [-Wunused-variable] 54 | double cps = tdc_dp_n_seqs_total | ^~~ tdc/src/core/decode_profile.c:53:16: warning: unused variable ‘pct’ [-Wunused-variable] 53 | double pct = 100.0 * (double)tdc_dp_cycles[i] / (double)total; | ^~~ tdc/src/core/decode_profile.c:72:20: warning: unused variable ‘pct’ [-Wunused-variable] 72 | double pct = 100.0 * (double)tdc_dp_off_hist[i] / (double)hsum; | ^~~ tdc/src/core/decode_profile.c:65:28: warning: unused variable ‘labels’ [-Wunused-variable] 65 | static const char *labels[8] = { | ^~~~~~ tdc/src/core/decode_profile.c:44:24: warning: unused variable ‘names’ [-Wunused-variable] 44 | static const char *names[TDC_DP_NSEC] = { | ^~~~~ gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tdc/src/core/error.c -o tdc/src/core/error.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tdc/src/core/registry.c -o tdc/src/core/registry.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tdc/src/core/stream.c -o tdc/src/core/stream.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tdc/src/core/version.c -o tdc/src/core/version.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tdc/src/entropy/deflate.c -o tdc/src/entropy/deflate.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tdc/src/entropy/fse.c -o tdc/src/entropy/fse.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tdc/src/entropy/huffman.c -o tdc/src/entropy/huffman.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tdc/src/entropy/huffman4.c -o tdc/src/entropy/huffman4.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tdc/src/entropy/lane.c -o tdc/src/entropy/lane.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tdc/src/entropy/lz.c -o tdc/src/entropy/lz.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tdc/src/entropy/lz_opt.c -o tdc/src/entropy/lz_opt.o tdc/src/entropy/lz_opt.c: In function ‘tdc_lz_parse_optimal_streams’: tdc/src/entropy/lz_opt.c:917:18: warning: unused variable ‘cnt_work’ [-Wunused-variable] 917 | uint64_t cnt_work = cnt_total - cnt_skip - cnt_inf; | ^~~~~~~~ tdc/src/entropy/lz_opt.c:915:16: warning: unused variable ‘t_end’ [-Wunused-variable] 915 | double t_end = tdc_now_secs(); | ^~~~~ tdc/src/entropy/lz_opt.c:864:18: warning: unused variable ‘t_loop’ [-Wunused-variable] 864 | const double t_loop = timing ? tdc_now_secs() : 0.0; | ^~~~~~ tdc/src/entropy/lz_opt.c:705:29: warning: variable ‘rep_calls’ set but not used [-Wunused-but-set-variable=] 705 | uint64_t rep_bytes = 0, rep_calls = 0; | ^~~~~~~~~ tdc/src/entropy/lz_opt.c:705:14: warning: variable ‘rep_bytes’ set but not used [-Wunused-but-set-variable=] 705 | uint64_t rep_bytes = 0, rep_calls = 0; | ^~~~~~~~~ tdc/src/entropy/lz_opt.c:704:29: warning: variable ‘cnt_chain_skip’ set but not used [-Wunused-but-set-variable=] 704 | uint64_t cnt_chain = 0, cnt_chain_skip = 0; | ^~~~~~~~~~~~~~ tdc/src/entropy/lz_opt.c:704:14: warning: variable ‘cnt_chain’ set but not used [-Wunused-but-set-variable=] 704 | uint64_t cnt_chain = 0, cnt_chain_skip = 0; | ^~~~~~~~~ tdc/src/entropy/lz_opt.c:703:41: warning: variable ‘cnt_rep_skip’ set but not used [-Wunused-but-set-variable=] 703 | uint64_t cnt_skip = 0, cnt_inf = 0, cnt_rep_skip = 0; | ^~~~~~~~~~~~ tdc/src/entropy/lz_opt.c:700:18: warning: unused variable ‘t_init’ [-Wunused-variable] 700 | const double t_init = timing ? tdc_now_secs() : 0.0; | ^~~~~~ tdc/src/entropy/lz_opt.c:670:18: warning: unused variable ‘t_start’ [-Wunused-variable] 670 | const double t_start = timing ? tdc_now_secs() : 0.0; | ^~~~~~~ gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tdc/src/entropy/lz_streams.c -o tdc/src/entropy/lz_streams.o tdc/src/entropy/lz_streams.c: In function ‘lzs_encode’: tdc/src/entropy/lz_streams.c:1233:22: warning: variable ‘p_extra’ set but not used [-Wunused-but-set-variable=] 1233 | uint32_t p_extra = 0; | ^~~~~~~ tdc/src/entropy/lz_streams.c:1347:18: warning: variable ‘n_repcodes’ set but not used [-Wunused-but-set-variable=] 1347 | uint32_t n_repcodes = 0; | ^~~~~~~~~~ tdc/src/entropy/lz_streams.c:1346:37: warning: variable ‘ml_extra_bits’ set but not used [-Wunused-but-set-variable=] 1346 | uint32_t ll_extra_bits = 0, ml_extra_bits = 0, off_extra_bits = 0; | ^~~~~~~~~~~~~ tdc/src/entropy/lz_streams.c:1346:18: warning: variable ‘ll_extra_bits’ set but not used [-Wunused-but-set-variable=] 1346 | uint32_t ll_extra_bits = 0, ml_extra_bits = 0, off_extra_bits = 0; | ^~~~~~~~~~~~~ tdc/src/entropy/lz_streams.c:1566:16: warning: unused variable ‘t_total’ [-Wunused-variable] 1566 | double t_total = t_initial + t_priced + t_build + t_entropy; | ^~~~~~~ tdc/src/entropy/lz_streams.c:1565:16: warning: unused variable ‘t_other’ [-Wunused-variable] 1565 | double t_other = t_entropy - t_lit_ctx; | ^~~~~~~ tdc/src/entropy/lz_streams.c:1584:21: warning: unused variable ‘lit_mode’ [-Wunused-variable] 1584 | const char *lit_mode = use_lit_ctx ? "CTX" : id_name[id_lit]; | ^~~~~~~~ tdc/src/entropy/lz_streams.c:1582:18: warning: unused variable ‘total_enc’ [-Wunused-variable] 1582 | uint32_t total_enc = (uint32_t)LZS_HEADER_SIZE_V2 | ^~~~~~~~~ tdc/src/entropy/lz_streams.c: At top level: tdc/src/entropy/lz_streams.c:2061:19: warning: ‘lzs_reconstruct_symbols’ defined but not used [-Wunused-function] 2061 | static tdc_status lzs_reconstruct_symbols(const uint8_t *ll_dec, | ^~~~~~~~~~~~~~~~~~~~~~~ tdc/src/entropy/lz_streams.c:533:13: warning: ‘lzs_shuffle_u32’ defined but not used [-Wunused-function] 533 | static void lzs_shuffle_u32(const uint32_t *src, uint32_t n, uint8_t *dst) { | ^~~~~~~~~~~~~~~ gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tdc/src/entropy/mf_btree.c -o tdc/src/entropy/mf_btree.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tdc/src/entropy/mf_hashchain.c -o tdc/src/entropy/mf_hashchain.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tdc/src/entropy/none.c -o tdc/src/entropy/none.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tdc/src/format/block_record.c -o tdc/src/format/block_record.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tdc/src/format/header.c -o tdc/src/format/header.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tdc/src/format/metadata.c -o tdc/src/format/metadata.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tdc/src/format/rowgroup.c -o tdc/src/format/rowgroup.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tdc/src/format/schema.c -o tdc/src/format/schema.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tdc/src/format/stats.c -o tdc/src/format/stats.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tdc/src/layout/tiling.c -o tdc/src/layout/tiling.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tdc/src/layout/traverse.c -o tdc/src/layout/traverse.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tdc/src/model/delta1d.c -o tdc/src/model/delta1d.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tdc/src/model/delta2_1d.c -o tdc/src/model/delta2_1d.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tdc/src/model/dict.c -o tdc/src/model/dict.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tdc/src/model/dict_numeric.c -o tdc/src/model/dict_numeric.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tdc/src/model/fpc1d.c -o tdc/src/model/fpc1d.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tdc/src/model/plane2d.c -o tdc/src/model/plane2d.o tdc/src/model/plane2d.c: In function ‘plane2d_encode’: tdc/src/model/plane2d.c:765:18: warning: variable ‘energy’ set but not used [-Wunused-but-set-variable=] 765 | uint64_t energy = 0; | ^~~~~~ tdc/src/model/plane2d.c:764:18: warning: variable ‘n_nonzero’ set but not used [-Wunused-but-set-variable=] 764 | uint64_t n_nonzero = 0; | ^~~~~~~~~ gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tdc/src/model/pred2d.c -o tdc/src/model/pred2d.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tdc/src/model/pred3d.c -o tdc/src/model/pred3d.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tdc/src/model/pred3d_float.c -o tdc/src/model/pred3d_float.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tdc/src/model/quantize_pred2d.c -o tdc/src/model/quantize_pred2d.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tdc/src/model/raw.c -o tdc/src/model/raw.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tdc/src/model/sparse_zero_1d.c -o tdc/src/model/sparse_zero_1d.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tdc/src/model/stack2d.c -o tdc/src/model/stack2d.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tdc/src/symbols/residuals.c -o tdc/src/symbols/residuals.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tdc/src/symbols/runs.c -o tdc/src/symbols/runs.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tdc/src/transform/bitshuffle.c -o tdc/src/transform/bitshuffle.o tdc/src/transform/bitshuffle.c:219:13: warning: ‘bitshuffle_gather’ defined but not used [-Wunused-function] 219 | static void bitshuffle_gather(uint8_t *dst, const uint8_t *src, | ^~~~~~~~~~~~~~~~~ tdc/src/transform/bitshuffle.c:190:13: warning: ‘bitshuffle_scatter’ defined but not used [-Wunused-function] 190 | static void bitshuffle_scatter(uint8_t *dst, const uint8_t *src, | ^~~~~~~~~~~~~~~~~~ gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tdc/src/transform/complement.c -o tdc/src/transform/complement.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tdc/src/transform/quantize.c -o tdc/src/transform/quantize.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tdc/src/transform/shuffle.c -o tdc/src/transform/shuffle.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tdc/src/transform/zigzag.c -o tdc/src/transform/zigzag.o gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/libgeos/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./tdc/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c miniz/miniz.c -o miniz/miniz.o miniz/miniz.c:3185:9: note: ‘#pragma message: Using fopen, ftello, fseeko, stat() etc. path for file I/O - this path may not support large files.’ 3185 | #pragma message("Using fopen, ftello, fseeko, stat() etc. path for file I/O - this path may not support large files.") | ^~~~~~~ gcc-16 -shared -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -Wl,-O1 -o vectra.so agg_ops.o agg_spill.o array.o batch.o bed_scan.o block.o builder.o byte_reader.o coerce.o collect.o concat.o csv_scan.o csv_write.o dropcol.o edt.o error.o expr.o expr_datetime.o expr_geom.o expr_seq.o expr_string.o expr_vec.o fasta_scan.o feature_knn.o file_map.o filter.o focal.o fuzzy_join.o group_agg.o group_topn.o hash.o init.o interval_join.o join.o join_partition.o key_arena.o key_snap.o kmer.o libgeos.o limit.o network.o node_rows.o optimize.o project.o r_bridge.o r_bridge_core.o r_bridge_index.o r_bridge_io.o r_bridge_nodes.o r_bridge_raster.o rasterize.o rec_spill.o rowid.o scalar_ops.o scan.o schema.o sort.o sql_scan.o sql_write.o sqlite_format.o tiff_format.o tiff_scan.o tiff_write.o topn.o vec_raster.o vtr1_tdc.o vtr_append.o vtr_append_cols.o vtr_codec_tdc.o vtr_delete.o vtr_diff.o vtr_fileops.o vtr_geos.o vtr_overlay.o vtr_spatial.o vtr_write.o vtri.o warp.o window.o tdc/src/api/decode.o tdc/src/api/decode_dict.o tdc/src/api/decode_ex.o tdc/src/api/decode_impl.o tdc/src/api/decode_into.o tdc/src/api/decode_varlen.o tdc/src/api/encode.o tdc/src/api/pushpull_decode.o tdc/src/api/pushpull_encode.o tdc/src/api/stream_decode.o tdc/src/api/stream_encode.o tdc/src/core/arena.o tdc/src/core/block.o tdc/src/core/decode_profile.o tdc/src/core/error.o tdc/src/core/registry.o tdc/src/core/stream.o tdc/src/core/version.o tdc/src/entropy/deflate.o tdc/src/entropy/fse.o tdc/src/entropy/huffman.o tdc/src/entropy/huffman4.o tdc/src/entropy/lane.o tdc/src/entropy/lz.o tdc/src/entropy/lz_opt.o tdc/src/entropy/lz_streams.o tdc/src/entropy/mf_btree.o tdc/src/entropy/mf_hashchain.o tdc/src/entropy/none.o tdc/src/format/block_record.o tdc/src/format/header.o tdc/src/format/metadata.o tdc/src/format/rowgroup.o tdc/src/format/schema.o tdc/src/format/stats.o tdc/src/layout/tiling.o tdc/src/layout/traverse.o tdc/src/model/delta1d.o tdc/src/model/delta2_1d.o tdc/src/model/dict.o tdc/src/model/dict_numeric.o tdc/src/model/fpc1d.o tdc/src/model/plane2d.o tdc/src/model/pred2d.o tdc/src/model/pred3d.o tdc/src/model/pred3d_float.o tdc/src/model/quantize_pred2d.o tdc/src/model/raw.o tdc/src/model/sparse_zero_1d.o tdc/src/model/stack2d.o tdc/src/symbols/residuals.o tdc/src/symbols/runs.o tdc/src/transform/bitshuffle.o tdc/src/transform/complement.o tdc/src/transform/quantize.o tdc/src/transform/shuffle.o tdc/src/transform/zigzag.o miniz/miniz.o -fopenmp -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpC2CUZ6/R.INSTALL14c7ae19931dd7/vectra/src' make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpC2CUZ6/R.INSTALL14c7ae19931dd7/vectra/src' make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpC2CUZ6/R.INSTALL14c7ae19931dd7/vectra/src' installing to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/00LOCK-vectra/00new/vectra/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (vectra)