• using R Under development (unstable) (2026-07-31 r90332)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-08-01 18:38:47 UTC
• checking for file ‘varitas/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘varitas’ version ‘0.0.2’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/1s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘varitas’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/1s] OK
• checking whether the package can be unloaded cleanly ... [0s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/1s] OK
• checking loading without being on the library search path ... [0s/1s] OK
• checking whether startup messages can be suppressed ... [1s/1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [10s/14s] OK
• checking Rd files ... [0s/1s] NOTE checkRd: (-1) get.miniseq.sample.files.Rd:15: Lost braces     15 | \item{file.suffix}{Regex expression for end of file name. For example, `file.suffix = '_S\\d{1,2}_.*_R1_.*'` will match R1 files.1 files.}        | ^
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [1s/1s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [1s/2s] OK   Running ‘testthat.R’ [1s/2s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [4s/5s] OK
• checking PDF version of manual ... [5s/8s] OK
• checking HTML version of manual ... [1s/2s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0OrcLH’ ‘~/tmp/scratch/Rtmp17y6Df’   ‘~/tmp/scratch/Rtmp1RCHhQ’ ‘~/tmp/scratch/Rtmp1qFSvX’   ‘~/tmp/scratch/Rtmp2HcCxt’ ‘~/tmp/scratch/Rtmp2Pj7Hb’   ‘~/tmp/scratch/Rtmp2xDyqG’ ‘~/tmp/scratch/Rtmp3DsFS4’   ‘~/tmp/scratch/Rtmp48li0g’ ‘~/tmp/scratch/Rtmp4JnlAo’   ‘~/tmp/scratch/Rtmp4MmFAX’ ‘~/tmp/scratch/Rtmp4Pa28i’   ‘~/tmp/scratch/Rtmp4XHBsR’ ‘~/tmp/scratch/Rtmp5zOmJF’   ‘~/tmp/scratch/Rtmp6Cz7IV’ ‘~/tmp/scratch/Rtmp80OG2H’   ‘~/tmp/scratch/Rtmp8MdTfi’ ‘~/tmp/scratch/Rtmp8bXe2o’   ‘~/tmp/scratch/Rtmp9RAPCq’ ‘~/tmp/scratch/Rtmp9SRAYC’   ‘~/tmp/scratch/Rtmp9cxKKf’ ‘~/tmp/scratch/RtmpAsWvVf’   ‘~/tmp/scratch/RtmpAvTrfe’ ‘~/tmp/scratch/RtmpBesAvR’   ‘~/tmp/scratch/RtmpCIYD5z’ ‘~/tmp/scratch/RtmpDOKOsZ’   ‘~/tmp/scratch/RtmpEye4gQ’ ‘~/tmp/scratch/RtmpFdvha9’   ‘~/tmp/scratch/RtmpG5Qufg’ ‘~/tmp/scratch/RtmpGAg7N8’   ‘~/tmp/scratch/RtmpGUwpEP’ ‘~/tmp/scratch/RtmpGVbqjT’   ‘~/tmp/scratch/RtmpHWxN7N’ ‘~/tmp/scratch/RtmpHdQ7Sv’   ‘~/tmp/scratch/RtmpHjWU67’ ‘~/tmp/scratch/RtmpIgqUp7’   ‘~/tmp/scratch/RtmpIobLF3’ ‘~/tmp/scratch/RtmpJ6G0wW’   ‘~/tmp/scratch/RtmpJVKsbw’ ‘~/tmp/scratch/RtmpKHiMkx’   ‘~/tmp/scratch/RtmpKnnro6’ ‘~/tmp/scratch/RtmpL1ZXcD’   ‘~/tmp/scratch/RtmpL67Z1B’ ‘~/tmp/scratch/RtmpLIKslV’   ‘~/tmp/scratch/RtmpN8AO2o’ ‘~/tmp/scratch/RtmpNdM3yu’   ‘~/tmp/scratch/RtmpNgC0N6’ ‘~/tmp/scratch/RtmpO4RwUq’   ‘~/tmp/scratch/RtmpOFN8OH’ ‘~/tmp/scratch/RtmpOf8D1Q’   ‘~/tmp/scratch/RtmpPI51KN’ ‘~/tmp/scratch/RtmpPISi5m’   ‘~/tmp/scratch/RtmpQ5pqDU’ ‘~/tmp/scratch/RtmpQJK4c9’   ‘~/tmp/scratch/RtmpR4nlqy’ ‘~/tmp/scratch/RtmpRKrTj5’   ‘~/tmp/scratch/RtmpSgdaeU’ ‘~/tmp/scratch/RtmpSucZ0o’   ‘~/tmp/scratch/RtmpT1C7Rp’ ‘~/tmp/scratch/RtmpT4uyjl’   ‘~/tmp/scratch/RtmpTJ3jbH’ ‘~/tmp/scratch/RtmpTg3Y7o’   ‘~/tmp/scratch/RtmpUJ3ty4’ ‘~/tmp/scratch/RtmpUqnGON’   ‘~/tmp/scratch/RtmpVh3FcT’ ‘~/tmp/scratch/RtmpXLXYn5’   ‘~/tmp/scratch/RtmpXV2tqu’ ‘~/tmp/scratch/RtmpXaYGiw’   ‘~/tmp/scratch/RtmpXj1ZWU’ ‘~/tmp/scratch/RtmpYBJNFa’   ‘~/tmp/scratch/RtmpYNSnWi’ ‘~/tmp/scratch/RtmpZP6vNd’   ‘~/tmp/scratch/RtmpZYQFjV’ ‘~/tmp/scratch/RtmpaKrw3f’   ‘~/tmp/scratch/RtmpaY4XPK’ ‘~/tmp/scratch/RtmpabO4kJ’   ‘~/tmp/scratch/Rtmpb6o587’ ‘~/tmp/scratch/Rtmpb8rmjE’   ‘~/tmp/scratch/RtmpbpcYXi’ ‘~/tmp/scratch/RtmpcDfEs8’   ‘~/tmp/scratch/Rtmpd7ZM14’ ‘~/tmp/scratch/RtmpdHfK86’   ‘~/tmp/scratch/RtmpdQTq23’ ‘~/tmp/scratch/RtmpdhBRdm’   ‘~/tmp/scratch/Rtmpdmhfuk’ ‘~/tmp/scratch/RtmpdvtxTk’   ‘~/tmp/scratch/RtmpdxCp86’ ‘~/tmp/scratch/RtmpeUGFvm’   ‘~/tmp/scratch/RtmpendNhX’ ‘~/tmp/scratch/RtmpfjhuPo’   ‘~/tmp/scratch/Rtmpg7m2BT’ ‘~/tmp/scratch/RtmpgJoOYU’   ‘~/tmp/scratch/RtmpiFXVJN’ ‘~/tmp/scratch/RtmpjYSrZ2’   ‘~/tmp/scratch/RtmpjaWu9R’ ‘~/tmp/scratch/RtmpjpMtEc’   ‘~/tmp/scratch/Rtmpk4kaPg’ ‘~/tmp/scratch/RtmpkGDXma’   ‘~/tmp/scratch/RtmpkLoXpp’ ‘~/tmp/scratch/RtmpkcfcgS’   ‘~/tmp/scratch/Rtmpl4BhMJ’ ‘~/tmp/scratch/Rtmpl6OWCJ’   ‘~/tmp/scratch/RtmplOcntb’ ‘~/tmp/scratch/RtmpngQjxm’   ‘~/tmp/scratch/Rtmpnv9nx8’ ‘~/tmp/scratch/Rtmpq0jBfz’   ‘~/tmp/scratch/RtmpqO0Tz4’ ‘~/tmp/scratch/Rtmpqqjr6a’   ‘~/tmp/scratch/RtmprONWwG’ ‘~/tmp/scratch/Rtmps3VAwJ’   ‘~/tmp/scratch/Rtmps6kMXc’ ‘~/tmp/scratch/RtmptB0pO9’   ‘~/tmp/scratch/RtmptGEEgc’ ‘~/tmp/scratch/Rtmptm5m5m’   ‘~/tmp/scratch/Rtmpu32T11’ ‘~/tmp/scratch/RtmpuCSd75’   ‘~/tmp/scratch/RtmpuRpyRr’ ‘~/tmp/scratch/Rtmpucrsjj’   ‘~/tmp/scratch/Rtmpv6BiLc’ ‘~/tmp/scratch/RtmpvSFSpL’   ‘~/tmp/scratch/RtmpvvHdhb’ ‘~/tmp/scratch/RtmpxSdqHt’   ‘~/tmp/scratch/RtmpxhrE0H’ ‘~/tmp/scratch/RtmpyvFlnR’   ‘~/tmp/scratch/RtmpzM1qma’ ‘~/tmp/scratch/RtmpztJ8Tt’   ‘~/tmp/scratch/xvfb-run.01RgM4’ ‘~/tmp/scratch/xvfb-run.0YmEM3’   ‘~/tmp/scratch/xvfb-run.5luBOX’ ‘~/tmp/scratch/xvfb-run.707gSZ’   ‘~/tmp/scratch/xvfb-run.7Q1bte’ ‘~/tmp/scratch/xvfb-run.DFBB6u’   ‘~/tmp/scratch/xvfb-run.G4cy6v’ ‘~/tmp/scratch/xvfb-run.GE4o1o’   ‘~/tmp/scratch/xvfb-run.GMD3Uq’ ‘~/tmp/scratch/xvfb-run.H3AHRP’   ‘~/tmp/scratch/xvfb-run.H56Tq1’ ‘~/tmp/scratch/xvfb-run.I5L8wz’   ‘~/tmp/scratch/xvfb-run.LIPIXw’ ‘~/tmp/scratch/xvfb-run.MGmfXW’   ‘~/tmp/scratch/xvfb-run.Mbixwk’ ‘~/tmp/scratch/xvfb-run.OdeM25’   ‘~/tmp/scratch/xvfb-run.UvXSyl’ ‘~/tmp/scratch/xvfb-run.V0Yt7G’   ‘~/tmp/scratch/xvfb-run.VLNr1Q’ ‘~/tmp/scratch/xvfb-run.WEsdaF’   ‘~/tmp/scratch/xvfb-run.WM94Qa’ ‘~/tmp/scratch/xvfb-run.WfGJHg’   ‘~/tmp/scratch/xvfb-run.aYkHA5’ ‘~/tmp/scratch/xvfb-run.cG4jOY’   ‘~/tmp/scratch/xvfb-run.cbu2j3’ ‘~/tmp/scratch/xvfb-run.dJl1HW’   ‘~/tmp/scratch/xvfb-run.elGzQY’ ‘~/tmp/scratch/xvfb-run.elQy0w’   ‘~/tmp/scratch/xvfb-run.hdYxwa’ ‘~/tmp/scratch/xvfb-run.hiPFZJ’   ‘~/tmp/scratch/xvfb-run.hnmuBE’ ‘~/tmp/scratch/xvfb-run.iBeRjb’   ‘~/tmp/scratch/xvfb-run.iMW5jM’ ‘~/tmp/scratch/xvfb-run.ieTuqb’   ‘~/tmp/scratch/xvfb-run.iiKXBq’ ‘~/tmp/scratch/xvfb-run.ijyPSh’   ‘~/tmp/scratch/xvfb-run.jfuyrV’ ‘~/tmp/scratch/xvfb-run.kZMboB’   ‘~/tmp/scratch/xvfb-run.l5Axnl’ ‘~/tmp/scratch/xvfb-run.mUS1F1’   ‘~/tmp/scratch/xvfb-run.mZn5U0’ ‘~/tmp/scratch/xvfb-run.mzmHFR’   ‘~/tmp/scratch/xvfb-run.oRH6bq’ ‘~/tmp/scratch/xvfb-run.t3MuRb’   ‘~/tmp/scratch/xvfb-run.tcyXdJ’ ‘~/tmp/scratch/xvfb-run.tgDRAY’   ‘~/tmp/scratch/xvfb-run.u93Al6’ ‘~/tmp/scratch/xvfb-run.uGwtoO’   ‘~/tmp/scratch/xvfb-run.ugyfaC’ ‘~/tmp/scratch/xvfb-run.yJzNCR’   ‘~/tmp/scratch/xvfb-run.ySU4uj’ ‘~/tmp/scratch/xvfb-run.yo2ARz’   ‘~/tmp/scratch/xvfb-run.zI5XAv’ ‘~/tmp/scratch/xvfb-run.zP1NxB’
• DONE

Status: 2 NOTEs