• using R Under development (unstable) (2026-07-30 r90327)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-07-31 18:38:27 UTC
• checking for file ‘varitas/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘varitas’ version ‘0.0.2’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/1s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘varitas’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/1s] OK
• checking whether the package can be unloaded cleanly ... [0s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/1s] OK
• checking loading without being on the library search path ... [1s/1s] OK
• checking whether startup messages can be suppressed ... [0s/1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [10s/13s] OK
• checking Rd files ... [0s/1s] NOTE checkRd: (-1) get.miniseq.sample.files.Rd:15: Lost braces     15 | \item{file.suffix}{Regex expression for end of file name. For example, `file.suffix = '_S\\d{1,2}_.*_R1_.*'` will match R1 files.1 files.}        | ^
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [1s/1s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [1s/2s] OK   Running ‘testthat.R’ [1s/1s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [4s/5s] OK
• checking PDF version of manual ... [5s/7s] OK
• checking HTML version of manual ... [2s/2s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0Rjwao’ ‘~/tmp/scratch/Rtmp0gAzW1’   ‘~/tmp/scratch/Rtmp1DvgDJ’ ‘~/tmp/scratch/Rtmp1ErLvP’   ‘~/tmp/scratch/Rtmp1J7VOX’ ‘~/tmp/scratch/Rtmp1K2vL8’   ‘~/tmp/scratch/Rtmp1jJiIf’ ‘~/tmp/scratch/Rtmp1ykrhI’   ‘~/tmp/scratch/Rtmp240STP’ ‘~/tmp/scratch/Rtmp2cziXv’   ‘~/tmp/scratch/Rtmp3ZWRFb’ ‘~/tmp/scratch/Rtmp3lXiYz’   ‘~/tmp/scratch/Rtmp5TYLms’ ‘~/tmp/scratch/Rtmp5rnVKt’   ‘~/tmp/scratch/Rtmp61JPM4’ ‘~/tmp/scratch/Rtmp6NvP6p’   ‘~/tmp/scratch/Rtmp6SWIzC’ ‘~/tmp/scratch/Rtmp6UKb7h’   ‘~/tmp/scratch/Rtmp8BBofv’ ‘~/tmp/scratch/Rtmp8HHs7o’   ‘~/tmp/scratch/Rtmp8VIzeM’ ‘~/tmp/scratch/Rtmp98Zjpb’   ‘~/tmp/scratch/Rtmp9FqNzq’ ‘~/tmp/scratch/RtmpA98H7R’   ‘~/tmp/scratch/RtmpAIwYve’ ‘~/tmp/scratch/RtmpArTzpu’   ‘~/tmp/scratch/RtmpB2uW47’ ‘~/tmp/scratch/RtmpBE1RMl’   ‘~/tmp/scratch/RtmpBNxtJp’ ‘~/tmp/scratch/RtmpCGuwFf’   ‘~/tmp/scratch/RtmpCZDmCE’ ‘~/tmp/scratch/RtmpCxKLcn’   ‘~/tmp/scratch/RtmpDBddAs’ ‘~/tmp/scratch/RtmpDdwqwj’   ‘~/tmp/scratch/RtmpDus3iY’ ‘~/tmp/scratch/RtmpEbirBM’   ‘~/tmp/scratch/RtmpEyOFge’ ‘~/tmp/scratch/RtmpF1d69R’   ‘~/tmp/scratch/RtmpF5lZC6’ ‘~/tmp/scratch/RtmpGw4sWd’   ‘~/tmp/scratch/RtmpIAU64w’ ‘~/tmp/scratch/RtmpIFISmZ’   ‘~/tmp/scratch/RtmpJBHoE7’ ‘~/tmp/scratch/RtmpJb9ZRO’   ‘~/tmp/scratch/RtmpLBf3je’ ‘~/tmp/scratch/RtmpLYVFaB’   ‘~/tmp/scratch/RtmpLh3jjN’ ‘~/tmp/scratch/RtmpMjvRVY’   ‘~/tmp/scratch/RtmpOHe3TS’ ‘~/tmp/scratch/RtmpORX8uw’   ‘~/tmp/scratch/RtmpPYQcUS’ ‘~/tmp/scratch/RtmpRGLGjD’   ‘~/tmp/scratch/RtmpRRyeEX’ ‘~/tmp/scratch/RtmpRTFR5t’   ‘~/tmp/scratch/RtmpSAiTCS’ ‘~/tmp/scratch/RtmpSDIKdC’   ‘~/tmp/scratch/RtmpSEXHPM’ ‘~/tmp/scratch/RtmpSJpvrD’   ‘~/tmp/scratch/RtmpSdH8qH’ ‘~/tmp/scratch/RtmpSiR1om’   ‘~/tmp/scratch/RtmpSpVUoA’ ‘~/tmp/scratch/RtmpSq59tQ’   ‘~/tmp/scratch/RtmpTBsckX’ ‘~/tmp/scratch/RtmpUBMoAD’   ‘~/tmp/scratch/RtmpUQHr9C’ ‘~/tmp/scratch/RtmpVz0H9o’   ‘~/tmp/scratch/RtmpW7OaFI’ ‘~/tmp/scratch/RtmpWC38RG’   ‘~/tmp/scratch/RtmpWKi6EZ’ ‘~/tmp/scratch/RtmpX9VGb6’   ‘~/tmp/scratch/RtmpXF7Rc2’ ‘~/tmp/scratch/RtmpXKmdt8’   ‘~/tmp/scratch/RtmpXbYPkO’ ‘~/tmp/scratch/RtmpXfc2nJ’   ‘~/tmp/scratch/RtmpYBGoHq’ ‘~/tmp/scratch/RtmpYXvBau’   ‘~/tmp/scratch/RtmpYfPQet’ ‘~/tmp/scratch/RtmpZjDUC3’   ‘~/tmp/scratch/RtmpaLaS2c’ ‘~/tmp/scratch/RtmpaSryxV’   ‘~/tmp/scratch/Rtmpb3RB99’ ‘~/tmp/scratch/RtmpcdHZfw’   ‘~/tmp/scratch/Rtmpcg9Vof’ ‘~/tmp/scratch/RtmpclWSMO’   ‘~/tmp/scratch/RtmpctQZ9t’ ‘~/tmp/scratch/RtmpcyjvPG’   ‘~/tmp/scratch/RtmpdkJNoo’ ‘~/tmp/scratch/RtmpedxCLr’   ‘~/tmp/scratch/RtmpercsHi’ ‘~/tmp/scratch/RtmpfWyz7e’   ‘~/tmp/scratch/RtmpgYxR95’ ‘~/tmp/scratch/RtmpgiartD’   ‘~/tmp/scratch/Rtmpgx0l4Q’ ‘~/tmp/scratch/RtmphUrByx’   ‘~/tmp/scratch/RtmphX4nfn’ ‘~/tmp/scratch/RtmpiQUMmG’   ‘~/tmp/scratch/Rtmpjg33JX’ ‘~/tmp/scratch/RtmpkcDJSG’   ‘~/tmp/scratch/RtmpkcO3Hw’ ‘~/tmp/scratch/RtmpkjPSnH’   ‘~/tmp/scratch/RtmplIWJmL’ ‘~/tmp/scratch/RtmpleqC1X’   ‘~/tmp/scratch/Rtmpm6pq1a’ ‘~/tmp/scratch/RtmpmWqkCc’   ‘~/tmp/scratch/RtmpmXM98G’ ‘~/tmp/scratch/RtmpmsGjiq’   ‘~/tmp/scratch/Rtmpo9KIca’ ‘~/tmp/scratch/RtmpoqNcRc’   ‘~/tmp/scratch/RtmppDDgeN’ ‘~/tmp/scratch/Rtmpq84Gqd’   ‘~/tmp/scratch/RtmpqBrm2K’ ‘~/tmp/scratch/Rtmprjahwk’   ‘~/tmp/scratch/Rtmpt81xg0’ ‘~/tmp/scratch/Rtmptcu6FK’   ‘~/tmp/scratch/Rtmpu0fxVq’ ‘~/tmp/scratch/RtmpupYK3p’   ‘~/tmp/scratch/RtmpvHhTUN’ ‘~/tmp/scratch/RtmpvTDeJB’   ‘~/tmp/scratch/RtmpwYcV2n’ ‘~/tmp/scratch/RtmpwZlnvN’   ‘~/tmp/scratch/Rtmpyaa8aI’ ‘~/tmp/scratch/Rtmpyg148y’   ‘~/tmp/scratch/RtmpyguMyy’   ‘~/tmp/scratch/quarto-session31b7dbcda54e17a6’   ‘~/tmp/scratch/xvfb-run.0Y4o2R’ ‘~/tmp/scratch/xvfb-run.0jakN0’   ‘~/tmp/scratch/xvfb-run.1AVr1R’ ‘~/tmp/scratch/xvfb-run.1J2CJc’   ‘~/tmp/scratch/xvfb-run.2KiHA9’ ‘~/tmp/scratch/xvfb-run.2OMJHu’   ‘~/tmp/scratch/xvfb-run.3CQM3Y’ ‘~/tmp/scratch/xvfb-run.4M0fuO’   ‘~/tmp/scratch/xvfb-run.5IlKCp’ ‘~/tmp/scratch/xvfb-run.5uexXy’   ‘~/tmp/scratch/xvfb-run.7z9HEm’ ‘~/tmp/scratch/xvfb-run.8HXkTl’   ‘~/tmp/scratch/xvfb-run.9fTfli’ ‘~/tmp/scratch/xvfb-run.BqYzVu’   ‘~/tmp/scratch/xvfb-run.JpbHpZ’ ‘~/tmp/scratch/xvfb-run.L86h6f’   ‘~/tmp/scratch/xvfb-run.PKeN0q’ ‘~/tmp/scratch/xvfb-run.QoPSQ7’   ‘~/tmp/scratch/xvfb-run.U4vhiE’ ‘~/tmp/scratch/xvfb-run.Ut9cYj’   ‘~/tmp/scratch/xvfb-run.VceVZH’ ‘~/tmp/scratch/xvfb-run.WgMipO’   ‘~/tmp/scratch/xvfb-run.Wug0Wn’ ‘~/tmp/scratch/xvfb-run.XDaURX’   ‘~/tmp/scratch/xvfb-run.Xcbb5o’ ‘~/tmp/scratch/xvfb-run.a9yIAD’   ‘~/tmp/scratch/xvfb-run.aDueRc’ ‘~/tmp/scratch/xvfb-run.aF3Mtj’   ‘~/tmp/scratch/xvfb-run.asoA0K’ ‘~/tmp/scratch/xvfb-run.hHoLcS’   ‘~/tmp/scratch/xvfb-run.hT0G4N’ ‘~/tmp/scratch/xvfb-run.halBDA’   ‘~/tmp/scratch/xvfb-run.jbk7ew’ ‘~/tmp/scratch/xvfb-run.kAyG01’   ‘~/tmp/scratch/xvfb-run.kleC2p’ ‘~/tmp/scratch/xvfb-run.lez8Qq’   ‘~/tmp/scratch/xvfb-run.mH1RZ5’ ‘~/tmp/scratch/xvfb-run.mQiRM6’   ‘~/tmp/scratch/xvfb-run.mY9tQl’ ‘~/tmp/scratch/xvfb-run.mlymww’   ‘~/tmp/scratch/xvfb-run.ncIK1F’ ‘~/tmp/scratch/xvfb-run.suDTXN’   ‘~/tmp/scratch/xvfb-run.ufbZae’ ‘~/tmp/scratch/xvfb-run.wTaf5h’   ‘~/tmp/scratch/xvfb-run.wjCN3G’ ‘~/tmp/scratch/xvfb-run.xIK93D’   ‘~/tmp/scratch/xvfb-run.xJs2xS’ ‘~/tmp/scratch/xvfb-run.xVRU1H’   ‘~/tmp/scratch/xvfb-run.xz91Gy’ ‘~/tmp/scratch/xvfb-run.yaKqwv’   ‘~/tmp/scratch/xvfb-run.ytrMn2’
• DONE

Status: 2 NOTEs