• using R Under development (unstable) (2026-07-31 r90332)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-08-01 18:37:55 UTC
• checking for file ‘vaccine/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘vaccine’ version ‘1.4.0’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [2s/2s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘vaccine’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/0s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
• checking loading without being on the library search path ... [0s/0s] OK
• checking whether startup messages can be suppressed ... [0s/0s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [12s/17s] OK
• checking Rd files ... [0s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [2s/2s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [102s/116s] OK   Running ‘testthat.R’ [102s/115s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [145s/180s] OK
• checking PDF version of manual ... [4s/5s] OK
• checking HTML version of manual ... [0s/1s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp009A1S’ ‘~/tmp/scratch/Rtmp026U7O’   ‘~/tmp/scratch/Rtmp0Cnfe9’ ‘~/tmp/scratch/Rtmp1WVKGQ’   ‘~/tmp/scratch/Rtmp20oyJY’ ‘~/tmp/scratch/Rtmp2QYiPQ’   ‘~/tmp/scratch/Rtmp308gdS’ ‘~/tmp/scratch/Rtmp3BuwzP’   ‘~/tmp/scratch/Rtmp3M5uES’ ‘~/tmp/scratch/Rtmp48li0g’   ‘~/tmp/scratch/Rtmp4E5T8f’ ‘~/tmp/scratch/Rtmp4MmFAX’   ‘~/tmp/scratch/Rtmp5L4Q4K’ ‘~/tmp/scratch/Rtmp5MctqK’   ‘~/tmp/scratch/Rtmp5moGDM’ ‘~/tmp/scratch/Rtmp5zFXpq’   ‘~/tmp/scratch/Rtmp680cMZ’ ‘~/tmp/scratch/Rtmp6rSRuk’   ‘~/tmp/scratch/Rtmp7TrTfp’ ‘~/tmp/scratch/Rtmp7UWkWp’   ‘~/tmp/scratch/Rtmp82TKmY’ ‘~/tmp/scratch/Rtmp8698fV’   ‘~/tmp/scratch/Rtmp8QleuO’ ‘~/tmp/scratch/Rtmp954NfS’   ‘~/tmp/scratch/Rtmp99Qzrt’ ‘~/tmp/scratch/Rtmp9yEk07’   ‘~/tmp/scratch/RtmpAKGcnL’ ‘~/tmp/scratch/RtmpBM9vzo’   ‘~/tmp/scratch/RtmpBfsh9Q’ ‘~/tmp/scratch/RtmpBy7sMy’   ‘~/tmp/scratch/RtmpC4pnAP’ ‘~/tmp/scratch/RtmpCZCCbI’   ‘~/tmp/scratch/RtmpCmACUG’ ‘~/tmp/scratch/RtmpDy0ycr’   ‘~/tmp/scratch/RtmpDzippM’ ‘~/tmp/scratch/RtmpE45t3Y’   ‘~/tmp/scratch/RtmpE5lIxt’ ‘~/tmp/scratch/RtmpEMrcx1’   ‘~/tmp/scratch/RtmpFZdh40’ ‘~/tmp/scratch/RtmpFjUkCz’   ‘~/tmp/scratch/RtmpFnP2h1’ ‘~/tmp/scratch/RtmpG0p3B0’   ‘~/tmp/scratch/RtmpG4KTbk’ ‘~/tmp/scratch/RtmpGAg7N8’   ‘~/tmp/scratch/RtmpGeBz3Y’ ‘~/tmp/scratch/RtmpGeITcp’   ‘~/tmp/scratch/RtmpHEJdc4’ ‘~/tmp/scratch/RtmpHEkkpW’   ‘~/tmp/scratch/RtmpHk549a’ ‘~/tmp/scratch/RtmpHtxj9i’   ‘~/tmp/scratch/RtmpI0cDGv’ ‘~/tmp/scratch/RtmpI10rAw’   ‘~/tmp/scratch/RtmpIKUrzG’ ‘~/tmp/scratch/RtmpJMfisE’   ‘~/tmp/scratch/RtmpJdaXb5’ ‘~/tmp/scratch/RtmpKVTVst’   ‘~/tmp/scratch/RtmpKbFeWU’ ‘~/tmp/scratch/RtmpKuI1Gs’   ‘~/tmp/scratch/RtmpLcWsNc’ ‘~/tmp/scratch/RtmpLvQ6H2’   ‘~/tmp/scratch/RtmpM2kTx7’ ‘~/tmp/scratch/RtmpNLF1LL’   ‘~/tmp/scratch/RtmpNZwDDo’ ‘~/tmp/scratch/RtmpOURZ6w’   ‘~/tmp/scratch/RtmpOss9As’ ‘~/tmp/scratch/RtmpPAoJhw’   ‘~/tmp/scratch/RtmpPIZCqe’ ‘~/tmp/scratch/RtmpQLMtQB’   ‘~/tmp/scratch/RtmpRtMHqh’ ‘~/tmp/scratch/RtmpRuspz3’   ‘~/tmp/scratch/RtmpS357A6’ ‘~/tmp/scratch/RtmpSYjvgy’   ‘~/tmp/scratch/RtmpSrra3a’ ‘~/tmp/scratch/RtmpSzYeb2’   ‘~/tmp/scratch/RtmpTgpjA2’ ‘~/tmp/scratch/RtmpUsqm1o’   ‘~/tmp/scratch/RtmpV4mn4c’ ‘~/tmp/scratch/RtmpVshOl1’   ‘~/tmp/scratch/RtmpWD2Udm’ ‘~/tmp/scratch/RtmpWvKHQ3’   ‘~/tmp/scratch/RtmpXF6QaM’ ‘~/tmp/scratch/RtmpXPJqz1’   ‘~/tmp/scratch/RtmpXSGMWI’ ‘~/tmp/scratch/RtmpXsIAuO’   ‘~/tmp/scratch/RtmpY6P7Nj’ ‘~/tmp/scratch/RtmpYNSnWi’   ‘~/tmp/scratch/RtmpYR8KhL’ ‘~/tmp/scratch/RtmpYfBHCQ’   ‘~/tmp/scratch/RtmpYh5JyP’ ‘~/tmp/scratch/RtmpYsLISH’   ‘~/tmp/scratch/RtmpYuezJh’ ‘~/tmp/scratch/RtmpYuoWS4’   ‘~/tmp/scratch/RtmpYwxfVj’ ‘~/tmp/scratch/RtmpZYyIt7’   ‘~/tmp/scratch/Rtmpa3mzho’ ‘~/tmp/scratch/RtmpaJXnNn’   ‘~/tmp/scratch/RtmpaMYGQ3’ ‘~/tmp/scratch/RtmpacfM78’   ‘~/tmp/scratch/Rtmpaj3baq’ ‘~/tmp/scratch/RtmpanzPQz’   ‘~/tmp/scratch/Rtmpb4Yh2K’ ‘~/tmp/scratch/RtmpbHeEbw’   ‘~/tmp/scratch/RtmpbJfCUH’ ‘~/tmp/scratch/RtmpbQRFBr’   ‘~/tmp/scratch/RtmpbRL23K’ ‘~/tmp/scratch/RtmpbXJqzt’   ‘~/tmp/scratch/Rtmpbg2OtF’ ‘~/tmp/scratch/Rtmpc49v7u’   ‘~/tmp/scratch/RtmpcY1gGe’ ‘~/tmp/scratch/Rtmpcdg4Ar’   ‘~/tmp/scratch/Rtmpdj6Klc’ ‘~/tmp/scratch/Rtmpe5UPn9’   ‘~/tmp/scratch/Rtmpe9y9Uf’ ‘~/tmp/scratch/RtmpeShm8N’   ‘~/tmp/scratch/RtmpeyXo1H’ ‘~/tmp/scratch/RtmpfCraXq’   ‘~/tmp/scratch/RtmpfVInW1’ ‘~/tmp/scratch/RtmpgAigPV’   ‘~/tmp/scratch/RtmpgEqwrI’ ‘~/tmp/scratch/RtmpgIHgry’   ‘~/tmp/scratch/Rtmph6wmUI’ ‘~/tmp/scratch/RtmphmhOuZ’   ‘~/tmp/scratch/Rtmpi9NZJV’ ‘~/tmp/scratch/RtmpiY6eFo’   ‘~/tmp/scratch/RtmpiaXhyb’ ‘~/tmp/scratch/RtmpirnSpS’   ‘~/tmp/scratch/Rtmpkr7ACD’ ‘~/tmp/scratch/Rtmpm1Eo2h’   ‘~/tmp/scratch/RtmpmX22hW’ ‘~/tmp/scratch/RtmpmXLhDf’   ‘~/tmp/scratch/Rtmpn7yhcg’ ‘~/tmp/scratch/RtmpnVSFn4’   ‘~/tmp/scratch/Rtmpnb28so’ ‘~/tmp/scratch/Rtmpo7UL9j’   ‘~/tmp/scratch/RtmpoLAMnA’ ‘~/tmp/scratch/RtmponjO40’   ‘~/tmp/scratch/RtmppGsQcI’ ‘~/tmp/scratch/RtmppH4RtT’   ‘~/tmp/scratch/RtmpphTGLV’ ‘~/tmp/scratch/Rtmppj7oWU’   ‘~/tmp/scratch/RtmpqJuLkV’ ‘~/tmp/scratch/RtmpqfhktQ’   ‘~/tmp/scratch/Rtmpr2TZ8g’ ‘~/tmp/scratch/RtmprIpH0i’   ‘~/tmp/scratch/RtmprM5mBR’ ‘~/tmp/scratch/RtmprMZitr’   ‘~/tmp/scratch/RtmprVjIts’ ‘~/tmp/scratch/Rtmps8RyAE’   ‘~/tmp/scratch/RtmpsWx4MK’ ‘~/tmp/scratch/RtmpsfUyPv’   ‘~/tmp/scratch/RtmpsmZyqP’ ‘~/tmp/scratch/Rtmpty6Vha’   ‘~/tmp/scratch/RtmpuSYP4l’ ‘~/tmp/scratch/Rtmpv2z7U4’   ‘~/tmp/scratch/RtmpvAfc7F’ ‘~/tmp/scratch/RtmpvM5IaW’   ‘~/tmp/scratch/RtmpvfJNFw’ ‘~/tmp/scratch/Rtmpw6prN7’   ‘~/tmp/scratch/Rtmpw8C8WP’ ‘~/tmp/scratch/RtmpwG6a44’   ‘~/tmp/scratch/RtmpwPUk73’ ‘~/tmp/scratch/RtmpwxtlKV’   ‘~/tmp/scratch/Rtmpx1zjfj’ ‘~/tmp/scratch/Rtmpx9fypf’   ‘~/tmp/scratch/RtmpxHk9Yk’ ‘~/tmp/scratch/Rtmpxe4fZU’   ‘~/tmp/scratch/Rtmpxq5mxX’ ‘~/tmp/scratch/Rtmpxrli1H’   ‘~/tmp/scratch/RtmpygWOQe’ ‘~/tmp/scratch/RtmpzveH7U’   ‘~/tmp/scratch/ccxsDcbZ.s’   ‘~/tmp/scratch/quarto-session1bbffbd6b62dd4cd’   ‘~/tmp/scratch/xvfb-run.01RgM4’ ‘~/tmp/scratch/xvfb-run.0AB5ex’   ‘~/tmp/scratch/xvfb-run.0EWJr0’ ‘~/tmp/scratch/xvfb-run.2ISGRD’   ‘~/tmp/scratch/xvfb-run.36BTUD’ ‘~/tmp/scratch/xvfb-run.3epoVx’   ‘~/tmp/scratch/xvfb-run.4tTApA’ ‘~/tmp/scratch/xvfb-run.50iLyL’   ‘~/tmp/scratch/xvfb-run.6MZcY9’ ‘~/tmp/scratch/xvfb-run.6q7jHl’   ‘~/tmp/scratch/xvfb-run.70Uv9m’ ‘~/tmp/scratch/xvfb-run.7mxIRI’   ‘~/tmp/scratch/xvfb-run.8SnzY7’ ‘~/tmp/scratch/xvfb-run.ApNWga’   ‘~/tmp/scratch/xvfb-run.AyWank’ ‘~/tmp/scratch/xvfb-run.B6mpbT’   ‘~/tmp/scratch/xvfb-run.BCDpjs’ ‘~/tmp/scratch/xvfb-run.BzhXkv’   ‘~/tmp/scratch/xvfb-run.ClFTak’ ‘~/tmp/scratch/xvfb-run.EKt4KF’   ‘~/tmp/scratch/xvfb-run.FbKtwD’ ‘~/tmp/scratch/xvfb-run.Fngt5p’   ‘~/tmp/scratch/xvfb-run.GNs5Tw’ ‘~/tmp/scratch/xvfb-run.GTYNAW’   ‘~/tmp/scratch/xvfb-run.HTIeYg’ ‘~/tmp/scratch/xvfb-run.I1O62d’   ‘~/tmp/scratch/xvfb-run.Id33h5’ ‘~/tmp/scratch/xvfb-run.KmZvPC’   ‘~/tmp/scratch/xvfb-run.NQMIAX’ ‘~/tmp/scratch/xvfb-run.NWlsOk’   ‘~/tmp/scratch/xvfb-run.NYRTGY’ ‘~/tmp/scratch/xvfb-run.QakaXD’   ‘~/tmp/scratch/xvfb-run.R9dofr’ ‘~/tmp/scratch/xvfb-run.RvVVWI’   ‘~/tmp/scratch/xvfb-run.SuPi8U’ ‘~/tmp/scratch/xvfb-run.SukhBx’   ‘~/tmp/scratch/xvfb-run.UJ3IVI’ ‘~/tmp/scratch/xvfb-run.UvKiOY’   ‘~/tmp/scratch/xvfb-run.XNWysl’ ‘~/tmp/scratch/xvfb-run.Xo85Xv’   ‘~/tmp/scratch/xvfb-run.bBLny6’ ‘~/tmp/scratch/xvfb-run.bxu5T3’   ‘~/tmp/scratch/xvfb-run.dQCfw6’ ‘~/tmp/scratch/xvfb-run.dTIttC’   ‘~/tmp/scratch/xvfb-run.dzwfmE’ ‘~/tmp/scratch/xvfb-run.eq5IXq’   ‘~/tmp/scratch/xvfb-run.g3hBP7’ ‘~/tmp/scratch/xvfb-run.gdMny3’   ‘~/tmp/scratch/xvfb-run.h3T1Zd’ ‘~/tmp/scratch/xvfb-run.hiPFZJ’   ‘~/tmp/scratch/xvfb-run.iMW5jM’ ‘~/tmp/scratch/xvfb-run.ijyPSh’   ‘~/tmp/scratch/xvfb-run.kENnxu’ ‘~/tmp/scratch/xvfb-run.kFOMVe’   ‘~/tmp/scratch/xvfb-run.kLW6lV’ ‘~/tmp/scratch/xvfb-run.kdJkzY’   ‘~/tmp/scratch/xvfb-run.lipk9Z’ ‘~/tmp/scratch/xvfb-run.m9LjbI’   ‘~/tmp/scratch/xvfb-run.mQlAK9’ ‘~/tmp/scratch/xvfb-run.mwQD3n’   ‘~/tmp/scratch/xvfb-run.nF0IRu’ ‘~/tmp/scratch/xvfb-run.nUyiNo’   ‘~/tmp/scratch/xvfb-run.no6JOx’ ‘~/tmp/scratch/xvfb-run.o2r3tM’   ‘~/tmp/scratch/xvfb-run.oMgWTj’ ‘~/tmp/scratch/xvfb-run.ppSTJA’   ‘~/tmp/scratch/xvfb-run.pufU3g’ ‘~/tmp/scratch/xvfb-run.qToRg9’   ‘~/tmp/scratch/xvfb-run.qxDFNl’ ‘~/tmp/scratch/xvfb-run.t1HN5O’   ‘~/tmp/scratch/xvfb-run.x8XPqW’ ‘~/tmp/scratch/xvfb-run.xLhbJs’   ‘~/tmp/scratch/xvfb-run.ya9Zbo’
• DONE

Status: 1 NOTE