• using R Under development (unstable) (2026-07-30 r90327)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-07-31 18:37:35 UTC
• checking for file ‘vaccine/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘vaccine’ version ‘1.4.0’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [2s/2s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘vaccine’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/0s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
• checking loading without being on the library search path ... [0s/0s] OK
• checking whether startup messages can be suppressed ... [0s/0s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [11s/13s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [2s/2s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [103s/118s] OK   Running ‘testthat.R’ [103s/118s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [149s/206s] OK
• checking PDF version of manual ... [4s/7s] OK
• checking HTML version of manual ... [0s/1s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0Uqadg’ ‘~/tmp/scratch/Rtmp0cM8r3’   ‘~/tmp/scratch/Rtmp0goM8o’ ‘~/tmp/scratch/Rtmp1BSK9e’   ‘~/tmp/scratch/Rtmp1KvArY’ ‘~/tmp/scratch/Rtmp21euu1’   ‘~/tmp/scratch/Rtmp2Lfko7’ ‘~/tmp/scratch/Rtmp2XgEkN’   ‘~/tmp/scratch/Rtmp3FfjO1’ ‘~/tmp/scratch/Rtmp4gCNvu’   ‘~/tmp/scratch/Rtmp4tHKK3’ ‘~/tmp/scratch/Rtmp5O9xdb’   ‘~/tmp/scratch/Rtmp5WS7ks’ ‘~/tmp/scratch/Rtmp5cTWJN’   ‘~/tmp/scratch/Rtmp5dkyXr’ ‘~/tmp/scratch/Rtmp5oM4mK’   ‘~/tmp/scratch/Rtmp7psjEp’ ‘~/tmp/scratch/Rtmp876KUA’   ‘~/tmp/scratch/Rtmp8KTbHN’ ‘~/tmp/scratch/Rtmp8NKHmz’   ‘~/tmp/scratch/Rtmp8if5Nj’ ‘~/tmp/scratch/Rtmp8oOT5q’   ‘~/tmp/scratch/Rtmp8vYhwk’ ‘~/tmp/scratch/Rtmp977hi2’   ‘~/tmp/scratch/Rtmp9BiVrZ’ ‘~/tmp/scratch/Rtmp9G2H8h’   ‘~/tmp/scratch/Rtmp9Wqzo3’ ‘~/tmp/scratch/Rtmp9ZqxUV’   ‘~/tmp/scratch/RtmpAOGEiX’ ‘~/tmp/scratch/RtmpAwnW9z’   ‘~/tmp/scratch/RtmpB46LoD’ ‘~/tmp/scratch/RtmpBKJ0gK’   ‘~/tmp/scratch/RtmpBcu2Nl’ ‘~/tmp/scratch/RtmpBhZZRc’   ‘~/tmp/scratch/RtmpCHCByO’ ‘~/tmp/scratch/RtmpD4YtJ4’   ‘~/tmp/scratch/RtmpDLn8nw’ ‘~/tmp/scratch/RtmpDUJvtx’   ‘~/tmp/scratch/RtmpDWEG6V’ ‘~/tmp/scratch/RtmpE7jgL1’   ‘~/tmp/scratch/RtmpEVWau2’ ‘~/tmp/scratch/RtmpEZ5xX6’   ‘~/tmp/scratch/RtmpEZLlGN’ ‘~/tmp/scratch/RtmpEz2zGU’   ‘~/tmp/scratch/RtmpFJbbBy’ ‘~/tmp/scratch/RtmpFWRF5d’   ‘~/tmp/scratch/RtmpFatsOj’ ‘~/tmp/scratch/RtmpFeZGSq’   ‘~/tmp/scratch/RtmpHjZsRG’ ‘~/tmp/scratch/RtmpHkp0qp’   ‘~/tmp/scratch/RtmpIEfkf0’ ‘~/tmp/scratch/RtmpIQNd86’   ‘~/tmp/scratch/RtmpIc4PEC’ ‘~/tmp/scratch/RtmpIeypCB’   ‘~/tmp/scratch/RtmpIfZJ9L’ ‘~/tmp/scratch/RtmpJJDu37’   ‘~/tmp/scratch/RtmpJXb3W9’ ‘~/tmp/scratch/RtmpJzGDN1’   ‘~/tmp/scratch/RtmpME16BG’ ‘~/tmp/scratch/RtmpMEBPcp’   ‘~/tmp/scratch/RtmpNXq2Jm’ ‘~/tmp/scratch/RtmpNY4dDs’   ‘~/tmp/scratch/RtmpOBldYe’ ‘~/tmp/scratch/RtmpOIvcb6’   ‘~/tmp/scratch/RtmpOQMP7x’ ‘~/tmp/scratch/RtmpOfIXD7’   ‘~/tmp/scratch/RtmpOupruQ’ ‘~/tmp/scratch/RtmpOzprqt’   ‘~/tmp/scratch/RtmpP1bq96’ ‘~/tmp/scratch/RtmpPkj5V6’   ‘~/tmp/scratch/RtmpPrin2K’ ‘~/tmp/scratch/RtmpQPhn3j’   ‘~/tmp/scratch/RtmpQiVVG3’ ‘~/tmp/scratch/RtmpQnBO71’   ‘~/tmp/scratch/RtmpR0GadS’ ‘~/tmp/scratch/RtmpR7fmXL’   ‘~/tmp/scratch/RtmpR8G0n0’ ‘~/tmp/scratch/RtmpRJB22n’   ‘~/tmp/scratch/RtmpRKoVSI’ ‘~/tmp/scratch/RtmpRLHwbC’   ‘~/tmp/scratch/RtmpRLfAQe’ ‘~/tmp/scratch/RtmpRRyeEX’   ‘~/tmp/scratch/RtmpRlFgeD’ ‘~/tmp/scratch/RtmpRp0rr3’   ‘~/tmp/scratch/RtmpRx8zRM’ ‘~/tmp/scratch/RtmpSIDZuX’   ‘~/tmp/scratch/RtmpSpr89P’ ‘~/tmp/scratch/RtmpSx0tUs’   ‘~/tmp/scratch/RtmpT088S7’ ‘~/tmp/scratch/RtmpT5CuFG’   ‘~/tmp/scratch/RtmpTmqa1v’ ‘~/tmp/scratch/RtmpTts3GN’   ‘~/tmp/scratch/RtmpU483UX’ ‘~/tmp/scratch/RtmpUJoxva’   ‘~/tmp/scratch/RtmpUQHr9C’ ‘~/tmp/scratch/RtmpVS4DgY’   ‘~/tmp/scratch/RtmpWJ2HEg’ ‘~/tmp/scratch/RtmpWooYqf’   ‘~/tmp/scratch/RtmpWz7VCA’ ‘~/tmp/scratch/RtmpXOxZ2L’   ‘~/tmp/scratch/RtmpZ9LgEP’ ‘~/tmp/scratch/RtmpZKJyrP’   ‘~/tmp/scratch/RtmpZZYVhJ’ ‘~/tmp/scratch/RtmpZnW4OX’   ‘~/tmp/scratch/RtmpZpW8eh’ ‘~/tmp/scratch/RtmpZs2zAj’   ‘~/tmp/scratch/RtmpZuPOEe’ ‘~/tmp/scratch/RtmpaAHAih’   ‘~/tmp/scratch/Rtmpb2Ifq3’ ‘~/tmp/scratch/RtmpcJQDkC’   ‘~/tmp/scratch/RtmpcNoTYI’ ‘~/tmp/scratch/Rtmpd3KcH7’   ‘~/tmp/scratch/RtmpdCGttk’ ‘~/tmp/scratch/Rtmpdbh1oL’   ‘~/tmp/scratch/Rtmpe1wLTA’ ‘~/tmp/scratch/RtmpeQ5FGY’   ‘~/tmp/scratch/RtmpfAFiES’ ‘~/tmp/scratch/RtmpfNUvJA’   ‘~/tmp/scratch/RtmpfRZMju’ ‘~/tmp/scratch/RtmpfYzCUf’   ‘~/tmp/scratch/RtmpgANo47’ ‘~/tmp/scratch/Rtmph8myi1’   ‘~/tmp/scratch/RtmphQ1Sc6’ ‘~/tmp/scratch/RtmphQ2lT1’   ‘~/tmp/scratch/RtmphrgGnJ’ ‘~/tmp/scratch/Rtmpirj1co’   ‘~/tmp/scratch/RtmpjBrf5I’ ‘~/tmp/scratch/RtmpjbuVzH’   ‘~/tmp/scratch/RtmpjroXBe’ ‘~/tmp/scratch/RtmpkXEfsY’   ‘~/tmp/scratch/Rtmpkqfbms’ ‘~/tmp/scratch/RtmpkxBrUE’   ‘~/tmp/scratch/Rtmpl0z9TB’ ‘~/tmp/scratch/Rtmpl9221g’   ‘~/tmp/scratch/RtmplAa6sq’ ‘~/tmp/scratch/RtmplKcI40’   ‘~/tmp/scratch/RtmplTjRvb’ ‘~/tmp/scratch/RtmplXiCO7’   ‘~/tmp/scratch/RtmpllhiE3’ ‘~/tmp/scratch/RtmplwLu3C’   ‘~/tmp/scratch/RtmpmLiFgg’ ‘~/tmp/scratch/RtmpmTiYuE’   ‘~/tmp/scratch/RtmpnJiwTu’ ‘~/tmp/scratch/RtmpngnqQE’   ‘~/tmp/scratch/RtmpnsSMpM’ ‘~/tmp/scratch/RtmpoErelD’   ‘~/tmp/scratch/RtmpoRFFC5’ ‘~/tmp/scratch/RtmpoUwt2O’   ‘~/tmp/scratch/RtmpogGo01’ ‘~/tmp/scratch/Rtmpp791Eh’   ‘~/tmp/scratch/RtmpqAUi6w’ ‘~/tmp/scratch/RtmpqETaG5’   ‘~/tmp/scratch/RtmpqLukBQ’ ‘~/tmp/scratch/RtmpqRjNEi’   ‘~/tmp/scratch/Rtmpqr6SbD’ ‘~/tmp/scratch/RtmprM5eiq’   ‘~/tmp/scratch/RtmprjjgPh’ ‘~/tmp/scratch/RtmprsWkP2’   ‘~/tmp/scratch/RtmpsBj9EO’ ‘~/tmp/scratch/RtmpsVobxU’   ‘~/tmp/scratch/Rtmpt81xg0’ ‘~/tmp/scratch/RtmptOht24’   ‘~/tmp/scratch/RtmptWLlNA’ ‘~/tmp/scratch/RtmptWa50e’   ‘~/tmp/scratch/RtmptljX9H’ ‘~/tmp/scratch/RtmptuWqf8’   ‘~/tmp/scratch/RtmpuR1GEi’ ‘~/tmp/scratch/RtmpuUXNP2’   ‘~/tmp/scratch/Rtmpuo4UWD’ ‘~/tmp/scratch/RtmpuzW1F2’   ‘~/tmp/scratch/RtmpvcArzU’ ‘~/tmp/scratch/RtmpwXXiA0’   ‘~/tmp/scratch/RtmpweMvLA’ ‘~/tmp/scratch/Rtmpwhz0IQ’   ‘~/tmp/scratch/RtmpxreuYx’ ‘~/tmp/scratch/RtmpxrzDP2’   ‘~/tmp/scratch/RtmpyT9KQH’ ‘~/tmp/scratch/RtmpyuFpp7’   ‘~/tmp/scratch/Rtmpyzrpbk’ ‘~/tmp/scratch/RtmpzTlXxl’   ‘~/tmp/scratch/ccWIcKlP.s’   ‘~/tmp/scratch/quarto-session113b296a96af9f6c’   ‘~/tmp/scratch/xvfb-run.0Y4o2R’ ‘~/tmp/scratch/xvfb-run.0l80VK’   ‘~/tmp/scratch/xvfb-run.27SCsU’ ‘~/tmp/scratch/xvfb-run.29st97’   ‘~/tmp/scratch/xvfb-run.3tiH8A’ ‘~/tmp/scratch/xvfb-run.5uexXy’   ‘~/tmp/scratch/xvfb-run.5veorS’ ‘~/tmp/scratch/xvfb-run.6dvbMh’   ‘~/tmp/scratch/xvfb-run.8hxgl8’ ‘~/tmp/scratch/xvfb-run.92bP9k’   ‘~/tmp/scratch/xvfb-run.9E3NEc’ ‘~/tmp/scratch/xvfb-run.9JjTnh’   ‘~/tmp/scratch/xvfb-run.AWyVbc’ ‘~/tmp/scratch/xvfb-run.Aashyj’   ‘~/tmp/scratch/xvfb-run.Ab8Udr’ ‘~/tmp/scratch/xvfb-run.AgLtz1’   ‘~/tmp/scratch/xvfb-run.Aj1tiY’ ‘~/tmp/scratch/xvfb-run.AqWWHA’   ‘~/tmp/scratch/xvfb-run.E2EncE’ ‘~/tmp/scratch/xvfb-run.EIGCra’   ‘~/tmp/scratch/xvfb-run.FHGC98’ ‘~/tmp/scratch/xvfb-run.FWxzXM’   ‘~/tmp/scratch/xvfb-run.J4ZyO2’ ‘~/tmp/scratch/xvfb-run.J7cqC9’   ‘~/tmp/scratch/xvfb-run.JYd24X’ ‘~/tmp/scratch/xvfb-run.K5F07q’   ‘~/tmp/scratch/xvfb-run.LXHwwo’ ‘~/tmp/scratch/xvfb-run.LcQhhJ’   ‘~/tmp/scratch/xvfb-run.LdBvNJ’ ‘~/tmp/scratch/xvfb-run.MkX2IM’   ‘~/tmp/scratch/xvfb-run.N63LdF’ ‘~/tmp/scratch/xvfb-run.P5Dok3’   ‘~/tmp/scratch/xvfb-run.PBRezk’ ‘~/tmp/scratch/xvfb-run.PKnqYi’   ‘~/tmp/scratch/xvfb-run.PPycCd’ ‘~/tmp/scratch/xvfb-run.Q4fHly’   ‘~/tmp/scratch/xvfb-run.ROUCDv’ ‘~/tmp/scratch/xvfb-run.RgZvys’   ‘~/tmp/scratch/xvfb-run.S8jAoL’ ‘~/tmp/scratch/xvfb-run.TA9cGN’   ‘~/tmp/scratch/xvfb-run.TaDdZX’ ‘~/tmp/scratch/xvfb-run.UGRYDf’   ‘~/tmp/scratch/xvfb-run.Ut9cYj’ ‘~/tmp/scratch/xvfb-run.VItvA3’   ‘~/tmp/scratch/xvfb-run.VJKazv’ ‘~/tmp/scratch/xvfb-run.VU6U6i’   ‘~/tmp/scratch/xvfb-run.W8SrUt’ ‘~/tmp/scratch/xvfb-run.WP4cUN’   ‘~/tmp/scratch/xvfb-run.WaCacp’ ‘~/tmp/scratch/xvfb-run.YMnNUK’   ‘~/tmp/scratch/xvfb-run.YlO7UB’ ‘~/tmp/scratch/xvfb-run.ZpIdJb’   ‘~/tmp/scratch/xvfb-run.b63szP’ ‘~/tmp/scratch/xvfb-run.dill19’   ‘~/tmp/scratch/xvfb-run.e99n6p’ ‘~/tmp/scratch/xvfb-run.gW5Nze’   ‘~/tmp/scratch/xvfb-run.hKVOUX’ ‘~/tmp/scratch/xvfb-run.k0yPF7’   ‘~/tmp/scratch/xvfb-run.knMU5g’ ‘~/tmp/scratch/xvfb-run.lFi1MY’   ‘~/tmp/scratch/xvfb-run.nHJL1N’ ‘~/tmp/scratch/xvfb-run.o0Cw6N’   ‘~/tmp/scratch/xvfb-run.pNdjfl’ ‘~/tmp/scratch/xvfb-run.pirfKc’   ‘~/tmp/scratch/xvfb-run.pjS8rW’ ‘~/tmp/scratch/xvfb-run.pxaiWO’   ‘~/tmp/scratch/xvfb-run.qDLgYM’ ‘~/tmp/scratch/xvfb-run.qxh93U’   ‘~/tmp/scratch/xvfb-run.r8HRQd’ ‘~/tmp/scratch/xvfb-run.sCrCAB’   ‘~/tmp/scratch/xvfb-run.szJ2ve’ ‘~/tmp/scratch/xvfb-run.tKoupa’   ‘~/tmp/scratch/xvfb-run.u8hJSt’ ‘~/tmp/scratch/xvfb-run.vMWhQI’   ‘~/tmp/scratch/xvfb-run.wA5uL7’ ‘~/tmp/scratch/xvfb-run.y0u2j4’   ‘~/tmp/scratch/xvfb-run.yjXkDj’ ‘~/tmp/scratch/xvfb-run.ywwzni’   ‘~/tmp/scratch/xvfb-run.zBqfrX’ ‘~/tmp/scratch/xvfb-run.zOBzJc’
• DONE

Status: 1 NOTE