• using R Under development (unstable) (2025-09-10 r88809)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-15 (Debian 15.2.0-3) 15.2.0     GNU Fortran (Debian 15.2.0-3) 15.2.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8
• checking for file ‘vDiveR/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘vDiveR’ version ‘2.0.1’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/1s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘vDiveR’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [2s/2s] OK
• checking whether the package can be loaded with stated dependencies ... [2s/2s] OK
• checking whether the package can be unloaded cleanly ... [2s/2s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/2s] OK
• checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
• checking loading without being on the library search path ... [2s/2s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [10s/13s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/1s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking examples ... [3s/4s] ERROR Running examples in ‘vDiveR-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: plot_conservation_level > ### Title: Conservation Levels Distribution Plot > ### Aliases: plot_conservation_level > > ### ** Examples > > plot_conservation_level(proteins_1host, conservation_label = 1,alpha=0.8, base_size = 15) Ignoring unknown labels: • fill : "Conservation level" Error in `geom_half_point()`: ! Problem while converting geom to grob. ℹ Error occurred in the 2nd layer. Caused by error in `fun()`: ! argument "layout" is missing, with no default Backtrace:      ▆   1. ├─base (local) `<fn>`(x)   2. ├─ggplot2 (local) `print.ggplot2::ggplot`(x)   3. │ ├─ggplot2::ggplot_gtable(data)   4. │ └─ggplot2 (local) `ggplot_gtable.ggplot2::ggplot_built`(data)   5. │ └─ggplot2:::by_layer(...)   6. │ ├─rlang::try_fetch(...)   7. │ │ ├─base::tryCatch(...)   8. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)   9. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])  10. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)  11. │ │ └─base::withCallingHandlers(...)  12. │ └─ggplot2 (local) f(l = layers[[i]], d = data[[i]])  13. │ └─l$draw_geom(d, layout)  14. │ └─ggplot2 (local) draw_geom(..., self = self)  15. │ └─self$geom$draw_layer(...)  16. │ └─ggplot2 (local) draw_layer(..., self = self)  17. │ └─base::lapply(...)  18. │ └─ggplot2 (local) FUN(X[[i]], ...)  19. │ ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params))  20. │ └─self$draw_panel(...)  21. │ └─ggplot2 (local) draw_panel(..., self = self)  22. │ └─base::lapply(...)  23. │ └─ggplot2 (local) FUN(X[[i]], ...)  24. │ └─self$draw_group(group, panel_params, coord, ...)  25. │ └─gghalves (local) draw_group(...)  26. │ └─transformation$compute_layer(transformation_df, transformation_params_new)  27. │ └─ggplot2 (local) compute_layer(..., self = self)  28. │ └─ggplot2:::dapply(...)  29. │ └─base::lapply(...)  30. │ └─ggplot2 (local) FUN(X[[i]], ...)  31. │ └─ggplot2 (local) apply_fun(cur_data)  32. │ └─ggplot2 (local) fun(x, ...)  33. └─rlang (local) `<fn>`(`<gtvrErrr>`)  34. └─handlers[[1L]](cnd)  35. └─cli::cli_abort(...)  36. └─rlang::abort(...) Execution halted
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [3s/3s] OK   Running ‘testthat.R’ [3s/3s]
• checking PDF version of manual ... [6s/8s] OK
• checking HTML version of manual ... [0s/1s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 ERROR