Check results for 'tinyVAST'

using R Under development (unstable) (2026-06-23 r90186)
using platform: x86_64-pc-linux-gnu
R was compiled by gcc-16 (Debian 16.1.0-1) 16.1.0 GNU Fortran (Debian 16.1.0-1) 16.1.0
running under: Debian GNU/Linux forky/sid
using session charset: UTF-8 * current time: 2026-06-24 18:09:06 UTC
checking for file ‘tinyVAST/DESCRIPTION’ ... OK
checking extension type ... Package
this is package ‘tinyVAST’ version ‘1.6.0’
package encoding: UTF-8
checking CRAN incoming feasibility ... [1s/2s] OK
checking package namespace information ... OK
checking package dependencies ... OK
checking if this is a source package ... OK
checking if there is a namespace ... OK
checking for executable files ... OK
checking for hidden files and directories ... OK
checking for portable file names ... OK
checking for sufficient/correct file permissions ... OK
checking whether package ‘tinyVAST’ can be installed ... OK See the install log for details.
used C++ compiler: ‘g++-16 (Debian 16.1.0-1) 16.1.0’
checking package directory ... OK
checking for future file timestamps ... OK
checking ‘build’ directory ... OK
checking DESCRIPTION meta-information ... OK
checking top-level files ... OK
checking for left-over files ... OK
checking index information ... OK
checking package subdirectories ... OK
checking code files for non-ASCII characters ... OK
checking R files for syntax errors ... OK
checking whether the package can be loaded ... [6s/8s] OK
checking whether the package can be loaded with stated dependencies ... [5s/7s] OK
checking whether the package can be unloaded cleanly ... [5s/6s] OK
checking whether the namespace can be loaded with stated dependencies ... [5s/6s] OK
checking whether the namespace can be unloaded cleanly ... [6s/8s] OK
checking loading without being on the library search path ... [7s/9s] OK
checking whether startup messages can be suppressed ... [6s/8s] OK
checking use of S3 registration ... OK
checking dependencies in R code ... OK
checking S3 generic/method consistency ... OK
checking replacement functions ... OK
checking foreign function calls ... OK
checking R code for possible problems ... [33s/42s] OK
checking Rd files ... [0s/1s] OK
checking Rd metadata ... OK
checking Rd line widths ... OK
checking Rd cross-references ... OK
checking for missing documentation entries ... OK
checking for code/documentation mismatches ... OK
checking Rd \usage sections ... OK
checking Rd contents ... OK
checking for unstated dependencies in examples ... OK
checking contents of ‘data’ directory ... OK
checking data for non-ASCII characters ... [1s/1s] OK
checking LazyData ... OK
checking data for ASCII and uncompressed saves ... OK
checking line endings in C/C++/Fortran sources/headers ... OK
checking line endings in Makefiles ... OK
checking compilation flags in Makevars ... OK
checking for GNU extensions in Makefiles ... OK
checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
checking use of PKG_*FLAGS in Makefiles ... OK
checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
checking pragmas in C/C++ headers and code ... OK
checking compilation flags used ... OK
checking compiled code ... OK
checking installed files from ‘inst/doc’ ... OK
checking files in ‘vignettes’ ... OK
checking examples ... [19s/24s] OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed cAIC 5.214 0.104 7.47
checking for unstated dependencies in ‘tests’ ... OK
checking tests ... [71s/44s] ERROR Running ‘testthat.R’ [70s/43s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > > > library(testthat) > library(tinyVAST) > > # Run tests > testthat::test_check("tinyVAST") Starting 2 test processes. > test-SAR.R: > test-SAR.R: Attaching package: 'igraph' > test-SAR.R: > test-SAR.R: The following objects are masked from 'package:stats': > test-SAR.R: > test-SAR.R: decompose, spectrum > test-SAR.R: > test-SAR.R: The following object is masked from 'package:testthat': > test-SAR.R: > test-SAR.R: compare > test-SAR.R: > test-SAR.R: The following object is masked from 'package:base': > test-SAR.R: > test-SAR.R: union > test-SAR.R: > test-basic-fits.R: Read 0 records > test-basic-fits.R: NOTE: it is generally simpler to use specifyEquations() or cfa() > test-basic-fits.R: see ?specifyEquations > test-basic-fits.R: Running optimizer_loop #1 > test-basic-fits.R: Matching hessian patterns... > test-basic-fits.R: Done > test-basic-fits.R: outer mgc: 139.7703 > test-basic-fits.R: outer mgc: 50.0049 > test-basic-fits.R: outer mgc: 10.49524 > test-basic-fits.R: outer mgc: 42.56898 > test-basic-fits.R: outer mgc: 33.02677 > test-basic-fits.R: outer mgc: 66.67452 > test-basic-fits.R: outer mgc: 14.43981 > test-basic-fits.R: outer mgc: 16.22027 > test-basic-fits.R: outer mgc: 6.067037 > test-basic-fits.R: outer mgc: 10.2619 > test-basic-fits.R: outer mgc: 6.263402 > test-basic-fits.R: outer mgc: 2.999899 > test-basic-fits.R: outer mgc: 8.677365 > test-basic-fits.R: outer mgc: 2.357661 > test-basic-fits.R: outer mgc: 0.1356342 > test-basic-fits.R: outer mgc: 0.03511879 > test-basic-fits.R: outer mgc: > test-basic-fits.R: 0.01736614 > test-basic-fits.R: outer mgc: 0.0009654507 > test-basic-fits.R: outer mgc: 8.114833e-05 > test-basic-fits.R: outer mgc: 8.114833e-05 > test-basic-fits.R: Running newton_loop #1 > test-basic-fits.R: outer mgc: 0.0358767 > test-basic-fits.R: outer mgc: 0.03591924 > test-basic-fits.R: outer mgc: 0.2250638 > test-basic-fits.R: outer mgc: 0.2253101 > test-basic-fits.R: outer mgc: 0.001985216 > test-basic-fits.R: outer mgc: 0.001994549 > test-basic-fits.R: outer mgc: 0.6193572 > test-basic-fits.R: outer mgc: 0.6193144 > test-basic-fits.R: outer mgc: > test-basic-fits.R: 0.1342154 > test-basic-fits.R: outer mgc: 0.1341932 > test-basic-fits.R: outer mgc: 0.03589794 > test-basic-fits.R: Running sdreport > test-basic-fits.R: outer mgc: 0.03589794 > test-basic-fits.R: outer mgc: 0.2249827 > test-basic-fits.R: outer mgc: 0.2253912 > test-basic-fits.R: outer mgc: 0.001990268 > test-basic-fits.R: outer mgc: 0.001989501 > test-basic-fits.R: outer mgc: 0.6192763 > test-basic-fits.R: outer mgc: 0.6193958 > test-basic-fits.R: outer mgc: 0.1341343 > test-basic-fits.R: outer mgc: 0.1342744 > test-basic-fits.R: outer mgc: 1.688327e-11 > test-basic-fits.R: Read 0 records > test-basic-fits.R: NOTE: it is generally simpler to use specifyEquations() or cfa() > test-basic-fits.R: see ?specifyEquations > test-basic-fits.R: Running optimizer_loop #1 > test-basic-fits.R: Matching hessian patterns... > test-basic-fits.R: Done > test-basic-fits.R: outer mgc: 56569.33 > test-basic-fits.R: outer mgc: 1273 > test-basic-fits.R: outer mgc: 24820.02 > test-basic-fits.R: outer mgc: 26004.83 > test-basic-fits.R: outer mgc: 19430.3 > test-basic-fits.R: outer mgc: 5033.068 > test-basic-fits.R: outer mgc: 2810.923 > test-basic-fits.R: outer mgc: 474.8056 > test-basic-fits.R: outer mgc: 6253.602 > test-basic-fits.R: outer mgc: 6107.439 > test-basic-fits.R: outer mgc: 61.63476 > test-basic-fits.R: outer mgc: 2488.894 > test-basic-fits.R: outer mgc: 626.5097 > test-basic-fits.R: outer mgc: 1218.44 > test-basic-fits.R: outer mgc: 657.8356 > test-basic-fits.R: outer mgc: 702.0894 > test-basic-fits.R: outer mgc: 2786.819 > test-basic-fits.R: outer mgc: 682.1724 > test-basic-fits.R: outer mgc: 3052.84 > test-basic-fits.R: outer mgc: 1430.854 > test-basic-fits.R: outer mgc: 173.5428 > test-basic-fits.R: outer mgc: 243.2674 > test-basic-fits.R: outer mgc: 30.15947 > test-basic-fits.R: outer mgc: 12.99486 > test-basic-fits.R: outer mgc: > test-basic-fits.R: 3.260848 > test-basic-fits.R: outer mgc: 0.2557589 > test-basic-fits.R: outer mgc: 0.0224636 > test-basic-fits.R: outer mgc: 0.0003993406 > test-basic-fits.R: Running newton_loop #1 > test-basic-fits.R: outer mgc: 0.0003993406 > test-basic-fits.R: outer mgc: 10.41578 > test-basic-fits.R: outer mgc: 10.41499 > test-basic-fits.R: outer mgc: 420.1269 > test-basic-fits.R: outer mgc: 420.1261 > test-basic-fits.R: outer mgc: 4715.552 > test-basic-fits.R: outer mgc: 4715.551 > test-basic-fits.R: outer mgc: 47003.78 > test-basic-fits.R: outer mgc: 47003.78 > test-basic-fits.R: outer mgc: 0.4409364 > test-basic-fits.R: outer mgc: 0.4432772 > test-basic-fits.R: outer mgc: 0.6367845 > test-basic-fits.R: outer mgc: 0.6369055 > test-basic-fits.R: outer mgc: 0.4539012 > test-basic-fits.R: outer mgc: 0.4511987 > test-basic-fits.R: Running sdreport > test-basic-fits.R: outer mgc: 10.41538 > test-basic-fits.R: outer mgc: 10.41538 > test-basic-fits.R: outer mgc: 420.1265 > test-basic-fits.R: outer mgc: 420.1265 > test-basic-fits.R: outer mgc: 4715.551 > test-basic-fits.R: outer mgc: 4715.551 > test-basic-fits.R: outer mgc: 47003.78 > test-basic-fits.R: outer mgc: 47003.78 > test-basic-fits.R: outer mgc: 0.4413403 > test-basic-fits.R: outer mgc: 0.4428824 > test-basic-fits.R: outer mgc: 0.6367665 > test-basic-fits.R: outer mgc: 0.6369234 > test-basic-fits.R: outer mgc: 0.4535091 > test-basic-fits.R: outer mgc: 0.4516052 > test-basic-fits.R: outer mgc: 1.369145e-09 > test-basic-fits.R: Read 0 records > test-basic-fits.R: NOTE: it is generally simpler to use specifyEquations() or cfa() > test-basic-fits.R: see ?specifyEquations > test-deviance-residuals.R: Student-t degrees of freedom parameter will be estimated. This used to be fixed at 3 by default. To fix it, supply a value to `df` (e.g., `df = 3`). > test-deviance-residuals.R: Student-t degrees of freedom parameter fixed at 7.81030735915579. To estimate it, set `df = NULL`. > test-deviance-residuals.R: Student-t degrees of freedom parameter fixed at 7.81030735915579. To estimate it, set `df = NULL`. > test-basic-fits.R: Running optimizer_loop #1 > test-basic-fits.R: Matching hessian patterns... Done > test-basic-fits.R: outer mgc: 56569.33 > test-dsem.R: > test-dsem.R: Attaching package: 'dsem' > test-dsem.R: > test-dsem.R: The following objects are masked from 'package:tinyVAST': > test-dsem.R: > test-dsem.R: bering_sea, cAIC, lognormal, make_dsem_ram, tweedie > test-dsem.R: > test-basic-fits.R: outer mgc: 1273 > test-basic-fits.R: outer mgc: 24820.02 > test-basic-fits.R: outer mgc: 26004.83 > test-basic-fits.R: outer mgc: 19430.3 > test-basic-fits.R: outer mgc: 5033.068 > test-basic-fits.R: outer mgc: 2810.923 > test-basic-fits.R: outer mgc: 474.8056 > test-basic-fits.R: outer mgc: 6253.602 > test-basic-fits.R: outer mgc: 6107.439 > test-basic-fits.R: outer mgc: 61.63476 > test-basic-fits.R: outer mgc: > test-basic-fits.R: 2488.894 > test-basic-fits.R: outer mgc: 626.5097 > test-basic-fits.R: outer mgc: 1218.44 > test-basic-fits.R: outer mgc: 657.8356 > test-basic-fits.R: outer mgc: 702.0894 > test-basic-fits.R: outer mgc: 2786.819 > test-basic-fits.R: outer mgc: 682.1724 > test-basic-fits.R: outer mgc: 3052.84 > test-basic-fits.R: outer mgc: 1430.854 > test-basic-fits.R: outer mgc: 173.5428 > test-basic-fits.R: outer mgc: 243.2674 > test-basic-fits.R: outer mgc: 30.15947 > test-basic-fits.R: outer mgc: 12.99486 > test-basic-fits.R: outer mgc: 3.260848 > test-basic-fits.R: outer mgc: 0.2557589 > test-basic-fits.R: outer mgc: 0.0224636 > test-basic-fits.R: outer mgc: 0.0003993406 > test-basic-fits.R: Running newton_loop #1 > test-basic-fits.R: outer mgc: 0.0003993406 > test-basic-fits.R: outer mgc: 10.41578 > test-basic-fits.R: outer mgc: > test-basic-fits.R: 10.41499 > test-basic-fits.R: outer mgc: 420.1269 > test-basic-fits.R: outer mgc: 420.1261 > test-basic-fits.R: outer mgc: 4715.552 > test-basic-fits.R: outer mgc: 4715.551 > test-basic-fits.R: outer mgc: 47003.78 > test-basic-fits.R: outer mgc: 47003.78 > test-basic-fits.R: outer mgc: 0.4409364 > test-basic-fits.R: outer mgc: 0.4432772 > test-basic-fits.R: outer mgc: 0.6367845 > test-basic-fits.R: outer mgc: 0.6369055 > test-basic-fits.R: outer mgc: 0.4539012 > test-basic-fits.R: outer mgc: 0.4511987 > test-basic-fits.R: Running sdreport > test-basic-fits.R: outer mgc: 10.41538 > test-basic-fits.R: outer mgc: 10.41538 > test-basic-fits.R: outer mgc: 420.1265 > test-basic-fits.R: outer mgc: 420.1265 > test-basic-fits.R: outer mgc: 4715.551 > test-basic-fits.R: outer mgc: 4715.551 > test-basic-fits.R: outer mgc: 47003.78 > test-basic-fits.R: outer mgc: 47003.78 > test-basic-fits.R: outer mgc: 0.4413403 > test-basic-fits.R: outer mgc: > test-basic-fits.R: 0.4428824 > test-basic-fits.R: outer mgc: 0.6367665 > test-basic-fits.R: outer mgc: 0.6369234 > test-basic-fits.R: outer mgc: 0.4535091 > test-basic-fits.R: outer mgc: 0.4516052 > test-basic-fits.R: outer mgc: 1.369145e-09 > test-basic-fits.R: Read 0 records > test-basic-fits.R: NOTE: it is generally simpler to use specifyEquations() or cfa() > test-basic-fits.R: see ?specifyEquations Saving _problems/test-dsem-35.R Saving _problems/test-dsem-107.R > test-basic-fits.R: Running optimizer_loop #1 > test-basic-fits.R: Matching hessian patterns... > test-basic-fits.R: Done > test-basic-fits.R: outer mgc: 329.5854 > test-basic-fits.R: outer mgc: 68.05303 > test-basic-fits.R: outer mgc: 18.1942 > test-basic-fits.R: outer mgc: 29.9166 > test-basic-fits.R: outer mgc: 43.11229 > test-basic-fits.R: outer mgc: 37.29186 > test-basic-fits.R: outer mgc: 39.28674 > test-basic-fits.R: outer mgc: 13.80786 > test-basic-fits.R: outer mgc: 56.23285 > test-basic-fits.R: outer mgc: 25.44009 > test-basic-fits.R: outer mgc: 7.885275 > test-basic-fits.R: outer mgc: 4.040772 > test-basic-fits.R: outer mgc: 3.719265 > test-basic-fits.R: outer mgc: 0.7612068 > test-basic-fits.R: outer mgc: 0.1442086 > test-basic-fits.R: outer mgc: 0.06999749 > test-basic-fits.R: outer mgc: 0.00454186 > test-basic-fits.R: outer mgc: 0.0009494951 > test-basic-fits.R: outer mgc: 0.0002300872 > test-basic-fits.R: Running newton_loop #1 > test-basic-fits.R: outer mgc: 0.0002300872 > test-basic-fits.R: outer mgc: 0.03431448 > test-basic-fits.R: outer mgc: 0.03423211 > test-basic-fits.R: outer mgc: 0.0006446326 > test-basic-fits.R: outer mgc: 0.0006324035 > test-basic-fits.R: outer mgc: 0.0006472365 > test-basic-fits.R: outer mgc: > test-basic-fits.R: 0.0006488188 > test-basic-fits.R: outer mgc: 0.0006098311 > test-basic-fits.R: outer mgc: 0.0006190326 > test-basic-fits.R: outer mgc: 0.2221437 > test-basic-fits.R: outer mgc: 0.2229958 > test-basic-fits.R: outer mgc: 0.636537 > test-basic-fits.R: outer mgc: 0.6371541 > test-basic-fits.R: outer mgc: 0.1350653 > test-basic-fits.R: outer mgc: 0.1356602 > test-basic-fits.R: Running sdreport > test-basic-fits.R: outer mgc: 0.03427353 > test-basic-fits.R: outer mgc: 0.03427353 > test-basic-fits.R: outer mgc: 0.0006385177 > test-basic-fits.R: outer mgc: 0.0006385177 > test-basic-fits.R: outer mgc: 0.0006480273 > test-basic-fits.R: outer mgc: 0.0006480273 > test-basic-fits.R: outer mgc: 0.0006144316 > test-basic-fits.R: outer mgc: 0.0006144316 > test-basic-fits.R: outer mgc: > test-basic-fits.R: 0.222374 > test-basic-fits.R: outer mgc: 0.2227659 > test-basic-fits.R: outer mgc: 0.6367665 > test-basic-fits.R: outer mgc: 0.6369234 > test-basic-fits.R: outer mgc: 0.1352949 > test-basic-fits.R: outer mgc: 0.1354297 > test-basic-fits.R: outer mgc: 7.672857e-10 > test-basic-fits.R: Read 0 records > test-basic-fits.R: NOTE: it is generally simpler to use specifyEquations() or cfa() > test-basic-fits.R: see ?specifyEquations > test-basic-fits.R: Running optimizer_loop #1 > test-basic-fits.R: Matching hessian patterns... > test-basic-fits.R: Done > test-basic-fits.R: outer mgc: 329.5854 > test-basic-fits.R: outer mgc: 68.05303 > test-basic-fits.R: outer mgc: 18.1942 > test-basic-fits.R: outer mgc: 29.9166 > test-basic-fits.R: outer mgc: 43.11229 > test-basic-fits.R: outer mgc: 37.29186 > test-basic-fits.R: outer mgc: 39.28674 > test-basic-fits.R: outer mgc: 13.80786 > test-basic-fits.R: outer mgc: 56.23285 > test-basic-fits.R: outer mgc: 25.44009 > test-basic-fits.R: outer mgc: 7.885275 > test-basic-fits.R: outer mgc: 4.040772 > test-basic-fits.R: outer mgc: 3.719265 > test-basic-fits.R: outer mgc: 0.7612068 > test-basic-fits.R: outer mgc: 0.1442086 > test-basic-fits.R: outer mgc: 0.06999749 > test-basic-fits.R: outer mgc: 0.00454186 > test-basic-fits.R: outer mgc: 0.0009494951 > test-basic-fits.R: outer mgc: 0.0002300872 > test-basic-fits.R: Running newton_loop #1 > test-basic-fits.R: outer mgc: 0.0002300872 > test-basic-fits.R: outer mgc: 0.03431448 > test-basic-fits.R: outer mgc: 0.03423211 > test-basic-fits.R: outer mgc: 0.0006446326 > test-basic-fits.R: outer mgc: 0.0006324035 > test-basic-fits.R: outer mgc: 0.0006472365 > test-basic-fits.R: outer mgc: 0.0006488188 > test-basic-fits.R: outer mgc: 0.0006098311 > test-basic-fits.R: outer mgc: 0.0006190326 > test-basic-fits.R: outer mgc: 0.2221437 > test-basic-fits.R: outer mgc: 0.2229958 > test-basic-fits.R: outer mgc: 0.636537 > test-basic-fits.R: outer mgc: 0.6371541 > test-basic-fits.R: outer mgc: 0.1350653 > test-basic-fits.R: outer mgc: 0.1356602 > test-basic-fits.R: Running sdreport > test-basic-fits.R: outer mgc: 0.03427353 > test-basic-fits.R: outer mgc: 0.03427353 > test-basic-fits.R: outer mgc: 0.0006385177 > test-basic-fits.R: outer mgc: 0.0006385177 > test-basic-fits.R: outer mgc: 0.0006480273 > test-basic-fits.R: outer mgc: 0.0006480273 > test-basic-fits.R: outer mgc: 0.0006144316 > test-basic-fits.R: outer mgc: 0.0006144316 > test-basic-fits.R: outer mgc: 0.222374 > test-basic-fits.R: outer mgc: 0.2227659 > test-basic-fits.R: outer mgc: 0.6367665 > test-basic-fits.R: outer mgc: 0.6369234 > test-basic-fits.R: outer mgc: 0.1352949 > test-basic-fits.R: outer mgc: 0.1354297 > test-basic-fits.R: outer mgc: 7.672857e-10 > test-mesh.R: Linking to GEOS 3.14.1, GDAL 3.13.1, PROJ 9.8.1; sf_use_s2() is TRUE > test-platform.R: Call: > test-platform.R: tinyVAST(formula = n ~ s(w), data = Data, space_term = "", spatial_domain = mesh, > test-platform.R: control = tinyVASTcontrol(getJointPrecision = TRUE)) > test-platform.R: > test-platform.R: Run time: > test-platform.R: Time difference of 1.305806 secs > test-platform.R: > test-platform.R: Family: > test-platform.R: $obs > test-platform.R: > test-platform.R: Family: gaussian > test-platform.R: Link function: identity > test-platform.R: > test-platform.R: > test-platform.R: > test-platform.R: > test-platform.R: sdreport(.) result > test-platform.R: Estimate Std. Error > test-platform.R: alpha_j 0.0009404264 0.1178307 > test-platform.R: theta_z 1.0062973954 0.1055913 > test-platform.R: log_lambda -2.4632150167 0.6906784 > test-platform.R: log_sigma -0.2433082708 0.1604643 > test-platform.R: log_kappa 0.1683191083 0.2109439 > test-platform.R: Maximum gradient component: 0.0004330321 > test-platform.R: > test-platform.R: Proportion conditional deviance explained: > test-platform.R: [1] 0.8706393 > test-platform.R: > test-platform.R: space_term: > test-platform.R: heads to from parameter start Estimate Std_Error z_value p_value > test-platform.R: 1 2 n n 1 > test-platform.R: <NA> 1.006297 0.1055913 9.530119 1.571033e-21 > test-platform.R: > test-platform.R: Fixed terms: > test-platform.R: Estimate Std_Error z_value p_value > test-platform.R: (Intercept) 0.0009404264 0.1178307 0.007981165 0.993632 > test-platform.R: > test-platform.R: Sanity check: > test-platform.R: > test-index-standardization.R: Loading required package: VAST > test-sfnetworks.R: Linking to GEOS 3.14.1, GDAL 3.13.1, PROJ 9.8.1; sf_use_s2() is TRUE > test-smooths.R: Gu & Wahba 4 term additive model > test-smooths.R: Gu & Wahba 4 term additive model > test-smooths.R: Gu & Wahba 4 term additive model [ FAIL 2 | WARN 3 | SKIP 20 | PASS 117 ] ══ Skipped tests (20) ══════════════════════════════════════════════════════════ • On CRAN (19): 'test-deviance-residuals.R:3:3', 'test-deviance-residuals.R:37:3', 'test-deviance-residuals.R:116:3', 'test-deviance-residuals.R:151:3', 'test-deviance-residuals.R:189:3', 'test-deviance-residuals.R:228:3', 'test-deviance-residuals.R:255:3', 'test-deviance-residuals.R:313:3', 'test-deviance-residuals.R:352:3', 'test-basic-fits.R:41:3', 'test-smooths.R:2:3', 'test-smooths.R:151:3', 'test-smooths.R:167:3', 'test-smooths.R:177:3', 'test-smooths.R:194:3', 'test-smooths.R:214:3', 'test-smooths.R:231:3', 'test-smooths.R:248:3', 'test-smooths.R:268:3' • require(VAST) is not TRUE (1): 'test-index-standardization.R:77:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-dsem.R:30:3'): dsem and tinyVAST give identical results without lags ── Error in `dsem(tsdata = tsdat, family = c("normal", "normal"), sem = "X -> Y, 0, beta", control = dsem_control(run_model = FALSE, use_REML = FALSE))`: starting with release 3.0.0, `family` must be a named list of Backtrace: ▆ 1. └─dsem::dsem(...) at test-dsem.R:30:3 ── Error ('test-dsem.R:101:3'): dsem and tinyVAST give identical results with lags ── Error in `dsem(tsdata = tsdat, family = c("normal", "normal"), sem = "X -> Y, 1, beta", control = dsem_control(run_model = TRUE, use_REML = FALSE, nlminb_loops = 0, newton_loops = 0, getsd = FALSE, extra_convergence_checks = FALSE))`: starting with release 3.0.0, `family` must be a named list of Backtrace: ▆ 1. └─dsem::dsem(...) at test-dsem.R:101:3 [ FAIL 2 | WARN 3 | SKIP 20 | PASS 117 ] Error: ! Test failures. Execution halted
checking for unstated dependencies in vignettes ... OK
checking package vignettes ... OK
checking re-building of vignette outputs ... [192s/256s] OK
checking PDF version of manual ... [5s/7s] OK
checking HTML version of manual ... [3s/5s] OK
checking for non-standard things in the check directory ... OK
DONE

Status: 1 ERROR