• using R Under development (unstable) (2026-07-31 r90332)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-08-01 18:18:05 UTC
• checking for file ‘tcgaViz/DESCRIPTION’ ... OK
• this is package ‘tcgaViz’ version ‘1.0.2’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [2s/2s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘tcgaViz’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [2s/2s] OK
• checking whether the package can be loaded with stated dependencies ... [2s/2s] OK
• checking whether the package can be unloaded cleanly ... [2s/2s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/2s] OK
• checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
• checking loading without being on the library search path ... [2s/2s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [10s/12s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking data for ASCII and uncompressed saves ... OK
• checking R/sysdata.rda ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [8s/11s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [3s/3s] OK   Running ‘testthat.R’ [3s/3s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [17s/24s] OK
• checking PDF version of manual ... [4s/5s] OK
• checking HTML version of manual ... [0s/1s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp02gKnm’ ‘~/tmp/scratch/Rtmp0C34Rd’   ‘~/tmp/scratch/Rtmp1O9k5O’ ‘~/tmp/scratch/Rtmp1Rj82e’   ‘~/tmp/scratch/Rtmp1fK6PZ’ ‘~/tmp/scratch/Rtmp2OHB87’   ‘~/tmp/scratch/Rtmp3OCuR0’ ‘~/tmp/scratch/Rtmp3rDSAJ’   ‘~/tmp/scratch/Rtmp3sircS’ ‘~/tmp/scratch/Rtmp4xC7v6’   ‘~/tmp/scratch/Rtmp5o7TLu’ ‘~/tmp/scratch/Rtmp6tQbMB’   ‘~/tmp/scratch/Rtmp6tTftS’ ‘~/tmp/scratch/Rtmp6xY2A2’   ‘~/tmp/scratch/Rtmp73hBWM’ ‘~/tmp/scratch/Rtmp74tcXB’   ‘~/tmp/scratch/Rtmp7lH7TT’ ‘~/tmp/scratch/Rtmp7vuBrU’   ‘~/tmp/scratch/Rtmp85cyfa’ ‘~/tmp/scratch/Rtmp8cgjMb’   ‘~/tmp/scratch/Rtmp8kh5cN’ ‘~/tmp/scratch/Rtmp8nLLpS’   ‘~/tmp/scratch/Rtmp8pTm3t’ ‘~/tmp/scratch/Rtmp9iOkdf’   ‘~/tmp/scratch/RtmpA6bWQJ’ ‘~/tmp/scratch/RtmpAHE05X’   ‘~/tmp/scratch/RtmpAMTi1y’ ‘~/tmp/scratch/RtmpBSNYPq’   ‘~/tmp/scratch/RtmpBw1e2T’ ‘~/tmp/scratch/RtmpCLRvuQ’   ‘~/tmp/scratch/RtmpCgMrgY’ ‘~/tmp/scratch/RtmpCqtkau’   ‘~/tmp/scratch/RtmpD0Id4F’ ‘~/tmp/scratch/RtmpDyZg6L’   ‘~/tmp/scratch/RtmpE2GWa7’ ‘~/tmp/scratch/RtmpEPuXuX’   ‘~/tmp/scratch/RtmpEQB66p’ ‘~/tmp/scratch/RtmpEaIttc’   ‘~/tmp/scratch/RtmpEk5STx’ ‘~/tmp/scratch/RtmpFAqD5V’   ‘~/tmp/scratch/RtmpFbSLLN’ ‘~/tmp/scratch/RtmpGHlm3X’   ‘~/tmp/scratch/RtmpGV9Cd2’ ‘~/tmp/scratch/RtmpGmwfwR’   ‘~/tmp/scratch/RtmpH0K8os’ ‘~/tmp/scratch/RtmpHHeAuY’   ‘~/tmp/scratch/RtmpHjJidt’ ‘~/tmp/scratch/RtmpI9dH6p’   ‘~/tmp/scratch/RtmpIQx2yS’ ‘~/tmp/scratch/RtmpIZ2BvZ’   ‘~/tmp/scratch/RtmpJBakWw’ ‘~/tmp/scratch/RtmpJa4ztT’   ‘~/tmp/scratch/RtmpKF2f1P’ ‘~/tmp/scratch/RtmpLR0YFi’   ‘~/tmp/scratch/RtmpLj9v0n’ ‘~/tmp/scratch/RtmpM93Pe3’   ‘~/tmp/scratch/RtmpN0golU’ ‘~/tmp/scratch/RtmpNNsH3W’   ‘~/tmp/scratch/RtmpNagEjP’ ‘~/tmp/scratch/RtmpO3bNU9’   ‘~/tmp/scratch/RtmpO9oLrE’ ‘~/tmp/scratch/RtmpOKxaVT’   ‘~/tmp/scratch/RtmpOaDrJM’ ‘~/tmp/scratch/RtmpOy1wDo’   ‘~/tmp/scratch/RtmpP8tn2O’ ‘~/tmp/scratch/RtmpPHCDcR’   ‘~/tmp/scratch/RtmpPZvquk’ ‘~/tmp/scratch/RtmpPg5ouK’   ‘~/tmp/scratch/RtmpPvesOI’ ‘~/tmp/scratch/RtmpQHqZDe’   ‘~/tmp/scratch/RtmpQeBmPF’ ‘~/tmp/scratch/RtmpR2Slp9’   ‘~/tmp/scratch/RtmpRGqfJT’ ‘~/tmp/scratch/RtmpRxRlzN’   ‘~/tmp/scratch/RtmpS0M4xc’ ‘~/tmp/scratch/RtmpT2BYRA’   ‘~/tmp/scratch/RtmpTOB3RR’ ‘~/tmp/scratch/RtmpTeg5JP’   ‘~/tmp/scratch/RtmpUQZFLM’ ‘~/tmp/scratch/RtmpUxrd8r’   ‘~/tmp/scratch/RtmpV9ig1L’ ‘~/tmp/scratch/RtmpVNsdve’   ‘~/tmp/scratch/RtmpVrXTGA’ ‘~/tmp/scratch/RtmpVvSzwC’   ‘~/tmp/scratch/RtmpWISuVH’ ‘~/tmp/scratch/RtmpWsoec0’   ‘~/tmp/scratch/RtmpXlWyme’ ‘~/tmp/scratch/RtmpYEI6H7’   ‘~/tmp/scratch/RtmpYTt9K3’ ‘~/tmp/scratch/RtmpYjOimf’   ‘~/tmp/scratch/RtmpYrsTSa’ ‘~/tmp/scratch/RtmpZnQ9Dj’   ‘~/tmp/scratch/RtmpbOw4sd’ ‘~/tmp/scratch/RtmpcsvqNE’   ‘~/tmp/scratch/Rtmpd4dMwm’ ‘~/tmp/scratch/RtmpdtKuZt’   ‘~/tmp/scratch/RtmpeLp5rO’ ‘~/tmp/scratch/RtmpeXl3Hy’   ‘~/tmp/scratch/RtmpemiyJ6’ ‘~/tmp/scratch/RtmpfUXB37’   ‘~/tmp/scratch/Rtmpfg1w1Q’ ‘~/tmp/scratch/Rtmpfkugfn’   ‘~/tmp/scratch/Rtmpg5Aqu0’ ‘~/tmp/scratch/RtmpgMZ1yZ’   ‘~/tmp/scratch/RtmpgcXxDZ’ ‘~/tmp/scratch/RtmphB121h’   ‘~/tmp/scratch/RtmphEJJmh’ ‘~/tmp/scratch/Rtmphbb3d4’   ‘~/tmp/scratch/Rtmpi1IIbA’ ‘~/tmp/scratch/Rtmpidbn9T’   ‘~/tmp/scratch/RtmpigqAiF’ ‘~/tmp/scratch/RtmpiqZBVp’   ‘~/tmp/scratch/RtmpivngW4’ ‘~/tmp/scratch/RtmpiwFXDv’   ‘~/tmp/scratch/RtmpjRCXwt’ ‘~/tmp/scratch/Rtmpjkm5WE’   ‘~/tmp/scratch/RtmpkR9Jxv’ ‘~/tmp/scratch/Rtmpkh27cQ’   ‘~/tmp/scratch/Rtmpklqh0T’ ‘~/tmp/scratch/RtmpkwAAph’   ‘~/tmp/scratch/RtmpkymObH’ ‘~/tmp/scratch/RtmplzbwP1’   ‘~/tmp/scratch/RtmpmMRebT’ ‘~/tmp/scratch/RtmpnGzKu2’   ‘~/tmp/scratch/RtmpnXzaAb’ ‘~/tmp/scratch/Rtmpo9RFhF’   ‘~/tmp/scratch/RtmpolSBTm’ ‘~/tmp/scratch/Rtmpp0LRVu’   ‘~/tmp/scratch/Rtmpp6FBeB’ ‘~/tmp/scratch/Rtmpq5ZEDw’   ‘~/tmp/scratch/RtmpqNLMZd’ ‘~/tmp/scratch/RtmpqTMHEW’   ‘~/tmp/scratch/RtmpqYaQzA’ ‘~/tmp/scratch/RtmpqakV9o’   ‘~/tmp/scratch/RtmprG4GSp’ ‘~/tmp/scratch/RtmprQjuMR’   ‘~/tmp/scratch/RtmprYF8AG’ ‘~/tmp/scratch/RtmprvN0o3’   ‘~/tmp/scratch/RtmpsaL6ED’ ‘~/tmp/scratch/Rtmpsu8JTY’   ‘~/tmp/scratch/RtmptBl0Qn’ ‘~/tmp/scratch/RtmptE3Ufc’   ‘~/tmp/scratch/RtmptFAhgD’ ‘~/tmp/scratch/RtmptHqgWi’   ‘~/tmp/scratch/RtmptY6qrS’ ‘~/tmp/scratch/Rtmptz7wUl’   ‘~/tmp/scratch/Rtmpu8rSF5’ ‘~/tmp/scratch/RtmputX07D’   ‘~/tmp/scratch/RtmpvAHItZ’ ‘~/tmp/scratch/RtmpvMyWBr’   ‘~/tmp/scratch/RtmpvhGTos’ ‘~/tmp/scratch/Rtmpvhksei’   ‘~/tmp/scratch/Rtmpvn6jjy’ ‘~/tmp/scratch/RtmpwH3RlH’   ‘~/tmp/scratch/RtmpwWzHrV’ ‘~/tmp/scratch/RtmpwZmvYq’   ‘~/tmp/scratch/RtmpxrUHVH’ ‘~/tmp/scratch/RtmpxuI3f1’   ‘~/tmp/scratch/RtmpzRW3WK’   ‘~/tmp/scratch/quarto-sessionf1d799785a2c6e17’   ‘~/tmp/scratch/xvfb-run.000Xgw’ ‘~/tmp/scratch/xvfb-run.049qgJ’   ‘~/tmp/scratch/xvfb-run.0UOFnz’ ‘~/tmp/scratch/xvfb-run.0VTdvw’   ‘~/tmp/scratch/xvfb-run.0cQbP8’ ‘~/tmp/scratch/xvfb-run.1mnYg2’   ‘~/tmp/scratch/xvfb-run.3DVelb’ ‘~/tmp/scratch/xvfb-run.7XAFpw’   ‘~/tmp/scratch/xvfb-run.9GmItY’ ‘~/tmp/scratch/xvfb-run.BRlmUO’   ‘~/tmp/scratch/xvfb-run.Bey5oH’ ‘~/tmp/scratch/xvfb-run.BmWjU8’   ‘~/tmp/scratch/xvfb-run.DTROKp’ ‘~/tmp/scratch/xvfb-run.F41XXt’   ‘~/tmp/scratch/xvfb-run.FP5WnV’ ‘~/tmp/scratch/xvfb-run.FaAHW5’   ‘~/tmp/scratch/xvfb-run.GQ1nVg’ ‘~/tmp/scratch/xvfb-run.GmZcGk’   ‘~/tmp/scratch/xvfb-run.H66tuy’ ‘~/tmp/scratch/xvfb-run.Ij54Tk’   ‘~/tmp/scratch/xvfb-run.JOQtyq’ ‘~/tmp/scratch/xvfb-run.JsRt65’   ‘~/tmp/scratch/xvfb-run.NkzLq7’ ‘~/tmp/scratch/xvfb-run.PyWRYp’   ‘~/tmp/scratch/xvfb-run.QPz09i’ ‘~/tmp/scratch/xvfb-run.SdLfsN’   ‘~/tmp/scratch/xvfb-run.SrchqJ’ ‘~/tmp/scratch/xvfb-run.U2xA7M’   ‘~/tmp/scratch/xvfb-run.VHfcSw’ ‘~/tmp/scratch/xvfb-run.Vxiyig’   ‘~/tmp/scratch/xvfb-run.Zfh2AJ’ ‘~/tmp/scratch/xvfb-run.a5qCDb’   ‘~/tmp/scratch/xvfb-run.aOSh4O’ ‘~/tmp/scratch/xvfb-run.bTaFMA’   ‘~/tmp/scratch/xvfb-run.cqWFkd’ ‘~/tmp/scratch/xvfb-run.dfhagJ’   ‘~/tmp/scratch/xvfb-run.dkyt65’ ‘~/tmp/scratch/xvfb-run.eMcOWR’   ‘~/tmp/scratch/xvfb-run.eZjhtz’ ‘~/tmp/scratch/xvfb-run.epFZkL’   ‘~/tmp/scratch/xvfb-run.eqpLGG’ ‘~/tmp/scratch/xvfb-run.esesdN’   ‘~/tmp/scratch/xvfb-run.gDWI85’ ‘~/tmp/scratch/xvfb-run.gQQy4t’   ‘~/tmp/scratch/xvfb-run.giTP6R’ ‘~/tmp/scratch/xvfb-run.gxaN6a’   ‘~/tmp/scratch/xvfb-run.io9R8S’ ‘~/tmp/scratch/xvfb-run.ki5AyB’   ‘~/tmp/scratch/xvfb-run.lu5cPs’ ‘~/tmp/scratch/xvfb-run.m8SnnA’   ‘~/tmp/scratch/xvfb-run.nACloQ’ ‘~/tmp/scratch/xvfb-run.njTgpF’   ‘~/tmp/scratch/xvfb-run.q66x3n’ ‘~/tmp/scratch/xvfb-run.s9s3EB’   ‘~/tmp/scratch/xvfb-run.u5vAcp’ ‘~/tmp/scratch/xvfb-run.vcuPu9’   ‘~/tmp/scratch/xvfb-run.vqcYYL’ ‘~/tmp/scratch/xvfb-run.wMWhJe’   ‘~/tmp/scratch/xvfb-run.ypELDE’ ‘~/tmp/scratch/xvfb-run.zCwyoB’
• DONE

Status: 1 NOTE