• using R Under development (unstable) (2026-08-01 r90334)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-08-02 18:16:16 UTC
• checking for file ‘taxonomizr/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘taxonomizr’ version ‘0.11.1’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [2s/2s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘taxonomizr’ can be installed ... OK See the install log for details.
• used C compiler: ‘gcc-16 (Debian 16.1.0-3) 16.1.0’
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
• checking loading without being on the library search path ... [0s/0s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [5s/6s] NOTE Found calls to structure() using deprecated special names:   taxonomizr/R/taxa.R (.Names: 2)   taxonomizr/tests/testthat/test_taxa.R (.Names: 1) '.Names' should be changed to 'names'.
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [3s/4s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [29s/36s] OK   Running ‘testthat.R’ [29s/36s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [2s/3s] OK
• checking PDF version of manual ... [4s/6s] OK
• checking HTML version of manual ... [1s/1s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0gxDqS’ ‘~/tmp/scratch/Rtmp1o6pYf’   ‘~/tmp/scratch/Rtmp2HRbuv’ ‘~/tmp/scratch/Rtmp2bTksy’   ‘~/tmp/scratch/Rtmp2lyvmA’ ‘~/tmp/scratch/Rtmp2yjhh4’   ‘~/tmp/scratch/Rtmp3UUFNn’ ‘~/tmp/scratch/Rtmp3u5rIb’   ‘~/tmp/scratch/Rtmp493VsX’ ‘~/tmp/scratch/Rtmp5RrYZy’   ‘~/tmp/scratch/Rtmp6lGs27’ ‘~/tmp/scratch/Rtmp7G4GPJ’   ‘~/tmp/scratch/Rtmp7MXsYe’ ‘~/tmp/scratch/Rtmp7rHcMJ’   ‘~/tmp/scratch/Rtmp7y0yVk’ ‘~/tmp/scratch/Rtmp8E4Qmd’   ‘~/tmp/scratch/Rtmp8TyHum’ ‘~/tmp/scratch/Rtmp8nN4Jf’   ‘~/tmp/scratch/Rtmp8pmW8a’ ‘~/tmp/scratch/Rtmp8w4KhO’   ‘~/tmp/scratch/Rtmp9vekAp’ ‘~/tmp/scratch/RtmpAmswqQ’   ‘~/tmp/scratch/RtmpAqSS8l’ ‘~/tmp/scratch/RtmpCD4656’   ‘~/tmp/scratch/RtmpCEtHlv’ ‘~/tmp/scratch/RtmpCXQGTr’   ‘~/tmp/scratch/RtmpCiHWLi’ ‘~/tmp/scratch/RtmpCqTeMT’   ‘~/tmp/scratch/RtmpDGlRps’ ‘~/tmp/scratch/RtmpEObGgq’   ‘~/tmp/scratch/RtmpEZY5HT’ ‘~/tmp/scratch/RtmpGqf6r0’   ‘~/tmp/scratch/RtmpHLKl4m’ ‘~/tmp/scratch/RtmpHvKjxf’   ‘~/tmp/scratch/RtmpICRBcu’ ‘~/tmp/scratch/RtmpIXtib4’   ‘~/tmp/scratch/RtmpIzXDOA’ ‘~/tmp/scratch/RtmpJksrSi’   ‘~/tmp/scratch/RtmpKL7qOz’ ‘~/tmp/scratch/RtmpKqbfPm’   ‘~/tmp/scratch/RtmpKrzQIo’ ‘~/tmp/scratch/RtmpKwrzcn’   ‘~/tmp/scratch/RtmpLHuvCN’ ‘~/tmp/scratch/RtmpLv8aJi’   ‘~/tmp/scratch/RtmpND46To’ ‘~/tmp/scratch/RtmpNWStLW’   ‘~/tmp/scratch/RtmpNXgvRX’ ‘~/tmp/scratch/RtmpO00ixo’   ‘~/tmp/scratch/RtmpOGIxj6’ ‘~/tmp/scratch/RtmpOxmid5’   ‘~/tmp/scratch/RtmpPiZrRG’ ‘~/tmp/scratch/RtmpPin4PE’   ‘~/tmp/scratch/RtmpQ4JPM2’ ‘~/tmp/scratch/RtmpRhpZsV’   ‘~/tmp/scratch/RtmpRihACY’ ‘~/tmp/scratch/RtmpRtjT56’   ‘~/tmp/scratch/RtmpS14gvy’ ‘~/tmp/scratch/RtmpSOarNU’   ‘~/tmp/scratch/RtmpSjYxSu’ ‘~/tmp/scratch/RtmpSqBCxF’   ‘~/tmp/scratch/RtmpTNHZIb’ ‘~/tmp/scratch/RtmpTilkJ1’   ‘~/tmp/scratch/RtmpU0WYKr’ ‘~/tmp/scratch/RtmpU8OFlO’   ‘~/tmp/scratch/RtmpU98gua’ ‘~/tmp/scratch/RtmpUV8zfK’   ‘~/tmp/scratch/RtmpUu1vSE’ ‘~/tmp/scratch/RtmpUwzJuo’   ‘~/tmp/scratch/RtmpVDiq5O’ ‘~/tmp/scratch/RtmpVYps48’   ‘~/tmp/scratch/RtmpVgiwYF’ ‘~/tmp/scratch/RtmpVwvw3S’   ‘~/tmp/scratch/RtmpW6RRUT’ ‘~/tmp/scratch/RtmpWRQBOQ’   ‘~/tmp/scratch/RtmpWeoYwe’ ‘~/tmp/scratch/RtmpXV4sWj’   ‘~/tmp/scratch/RtmpY6q286’ ‘~/tmp/scratch/RtmpYYU80X’   ‘~/tmp/scratch/RtmpYggiKp’ ‘~/tmp/scratch/RtmpZ340gZ’   ‘~/tmp/scratch/RtmpZOa72x’ ‘~/tmp/scratch/Rtmpa0Rw3u’   ‘~/tmp/scratch/Rtmpa8sGpJ’ ‘~/tmp/scratch/RtmpaHDiTn’   ‘~/tmp/scratch/RtmpaIf5b9’ ‘~/tmp/scratch/RtmpaQIkp4’   ‘~/tmp/scratch/RtmpacZOUA’ ‘~/tmp/scratch/Rtmpb0AGmE’   ‘~/tmp/scratch/RtmpbtN2VX’ ‘~/tmp/scratch/RtmpcWF0XB’   ‘~/tmp/scratch/Rtmpd1W3YE’ ‘~/tmp/scratch/RtmpdTSnTi’   ‘~/tmp/scratch/RtmpeBjiRh’ ‘~/tmp/scratch/RtmpeCJydb’   ‘~/tmp/scratch/RtmpeEK3VQ’ ‘~/tmp/scratch/Rtmpf6K3ac’   ‘~/tmp/scratch/RtmpfWUkUg’ ‘~/tmp/scratch/RtmpgHrv1Z’   ‘~/tmp/scratch/RtmpgPgHzv’ ‘~/tmp/scratch/Rtmpi34TgS’   ‘~/tmp/scratch/RtmpiutKru’ ‘~/tmp/scratch/RtmpjC9IZB’   ‘~/tmp/scratch/RtmpjVrTn4’ ‘~/tmp/scratch/RtmpjgIuuq’   ‘~/tmp/scratch/RtmplEvhnL’ ‘~/tmp/scratch/Rtmpm6t0Uh’   ‘~/tmp/scratch/Rtmpmem51A’ ‘~/tmp/scratch/RtmpmgVRbY’   ‘~/tmp/scratch/RtmpnVApAk’ ‘~/tmp/scratch/RtmpnuWkVT’   ‘~/tmp/scratch/RtmpoN2GVP’ ‘~/tmp/scratch/Rtmpq8IIYJ’   ‘~/tmp/scratch/RtmpqNbwBj’ ‘~/tmp/scratch/RtmpqjHJWI’   ‘~/tmp/scratch/RtmpqsPZjF’ ‘~/tmp/scratch/Rtmprik9H9’   ‘~/tmp/scratch/Rtmpru23Hb’ ‘~/tmp/scratch/Rtmps6ifYR’   ‘~/tmp/scratch/RtmpsLRZol’ ‘~/tmp/scratch/RtmptVsAaF’   ‘~/tmp/scratch/Rtmptlg18l’ ‘~/tmp/scratch/RtmpuXDtk5’   ‘~/tmp/scratch/RtmpuXWVff’ ‘~/tmp/scratch/RtmpuwOewE’   ‘~/tmp/scratch/Rtmpv2Jdgj’ ‘~/tmp/scratch/RtmpvFroiP’   ‘~/tmp/scratch/Rtmpw87yx2’ ‘~/tmp/scratch/RtmpwhnUQ5’   ‘~/tmp/scratch/Rtmpwu0iAB’ ‘~/tmp/scratch/Rtmpx9k9hC’   ‘~/tmp/scratch/RtmpxFjvdD’ ‘~/tmp/scratch/RtmpxNUyY6’   ‘~/tmp/scratch/RtmpxXoWVb’ ‘~/tmp/scratch/RtmpxaZwAF’   ‘~/tmp/scratch/Rtmpy05RVv’ ‘~/tmp/scratch/RtmpyC72rv’   ‘~/tmp/scratch/RtmpyNVEug’ ‘~/tmp/scratch/RtmpyVx6DE’   ‘~/tmp/scratch/RtmpyWZ90I’ ‘~/tmp/scratch/RtmpyfIO6o’   ‘~/tmp/scratch/Rtmpz7tbh2’ ‘~/tmp/scratch/RtmpzRkyAR’   ‘~/tmp/scratch/RtmpzexwIW’ ‘~/tmp/scratch/xvfb-run.0jV27o’   ‘~/tmp/scratch/xvfb-run.2h9H26’ ‘~/tmp/scratch/xvfb-run.3zVdGo’   ‘~/tmp/scratch/xvfb-run.4whSxo’ ‘~/tmp/scratch/xvfb-run.90yDaP’   ‘~/tmp/scratch/xvfb-run.AFafAj’ ‘~/tmp/scratch/xvfb-run.AglG8Z’   ‘~/tmp/scratch/xvfb-run.D8uQWV’ ‘~/tmp/scratch/xvfb-run.E95zRC’   ‘~/tmp/scratch/xvfb-run.EHsieC’ ‘~/tmp/scratch/xvfb-run.FKLTSI’   ‘~/tmp/scratch/xvfb-run.GRwwMf’ ‘~/tmp/scratch/xvfb-run.GWyZml’   ‘~/tmp/scratch/xvfb-run.GeMOZ0’ ‘~/tmp/scratch/xvfb-run.GxH6zu’   ‘~/tmp/scratch/xvfb-run.GyjnC1’ ‘~/tmp/scratch/xvfb-run.I52C4M’   ‘~/tmp/scratch/xvfb-run.JuOqim’ ‘~/tmp/scratch/xvfb-run.KBf63M’   ‘~/tmp/scratch/xvfb-run.KZNXHL’ ‘~/tmp/scratch/xvfb-run.Kv9ITX’   ‘~/tmp/scratch/xvfb-run.OZPlxP’ ‘~/tmp/scratch/xvfb-run.QEQAs6’   ‘~/tmp/scratch/xvfb-run.QmB8kR’ ‘~/tmp/scratch/xvfb-run.Rp8rgr’   ‘~/tmp/scratch/xvfb-run.UlBXpn’ ‘~/tmp/scratch/xvfb-run.YWinOH’   ‘~/tmp/scratch/xvfb-run.YuzWLi’ ‘~/tmp/scratch/xvfb-run.Z9krSA’   ‘~/tmp/scratch/xvfb-run.Zhzrlv’ ‘~/tmp/scratch/xvfb-run.a1ddiN’   ‘~/tmp/scratch/xvfb-run.a8lBa6’ ‘~/tmp/scratch/xvfb-run.bAZrLM’   ‘~/tmp/scratch/xvfb-run.bHsCd5’ ‘~/tmp/scratch/xvfb-run.c1OL8Z’   ‘~/tmp/scratch/xvfb-run.c3dcMO’ ‘~/tmp/scratch/xvfb-run.cPKNdC’   ‘~/tmp/scratch/xvfb-run.d6QEF2’ ‘~/tmp/scratch/xvfb-run.d7dy6R’   ‘~/tmp/scratch/xvfb-run.e3HqGd’ ‘~/tmp/scratch/xvfb-run.gJCCZh’   ‘~/tmp/scratch/xvfb-run.gkdqkC’ ‘~/tmp/scratch/xvfb-run.hHRhjO’   ‘~/tmp/scratch/xvfb-run.hiIo5n’ ‘~/tmp/scratch/xvfb-run.iC7vVM’   ‘~/tmp/scratch/xvfb-run.ixjYD1’ ‘~/tmp/scratch/xvfb-run.nUeVdz’   ‘~/tmp/scratch/xvfb-run.qVtoyv’ ‘~/tmp/scratch/xvfb-run.te0CJo’   ‘~/tmp/scratch/xvfb-run.wiTX0Y’ ‘~/tmp/scratch/xvfb-run.xIGvbJ’   ‘~/tmp/scratch/xvfb-run.zmK0y2’ ‘~/tmp/scratch/xvfb-run.zz1B1b’
• DONE

Status: 2 NOTEs