• using R Under development (unstable) (2026-08-01 r90334)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-08-02 18:14:17 UTC
• checking for file ‘syntenyPlotteR/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘syntenyPlotteR’ version ‘1.0.0’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [2s/2s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘syntenyPlotteR’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/2s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the package can be unloaded cleanly ... [1s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
• checking loading without being on the library search path ... [1s/2s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [8s/10s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [7s/9s] OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [2s/2s] OK
• checking PDF version of manual ... [4s/5s] OK
• checking HTML version of manual ... [0s/0s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0MxCOL’ ‘~/tmp/scratch/Rtmp0Oeyej’   ‘~/tmp/scratch/Rtmp0SOAwg’ ‘~/tmp/scratch/Rtmp0lhs4g’   ‘~/tmp/scratch/Rtmp1I7wbG’ ‘~/tmp/scratch/Rtmp1TAFZ8’   ‘~/tmp/scratch/Rtmp1eCxm2’ ‘~/tmp/scratch/Rtmp1qyDgX’   ‘~/tmp/scratch/Rtmp2Zt5S7’ ‘~/tmp/scratch/Rtmp2oOZ1q’   ‘~/tmp/scratch/Rtmp41yycr’ ‘~/tmp/scratch/Rtmp4cmCKf’   ‘~/tmp/scratch/Rtmp4keVdp’ ‘~/tmp/scratch/Rtmp6IRbJl’   ‘~/tmp/scratch/Rtmp6bH4Zn’ ‘~/tmp/scratch/Rtmp710gDt’   ‘~/tmp/scratch/Rtmp7EfEJe’ ‘~/tmp/scratch/Rtmp7hMD8k’   ‘~/tmp/scratch/Rtmp7ig11D’ ‘~/tmp/scratch/Rtmp7q3tPB’   ‘~/tmp/scratch/Rtmp8BCNFZ’ ‘~/tmp/scratch/Rtmp8NPS6q’   ‘~/tmp/scratch/Rtmp8NqAZv’ ‘~/tmp/scratch/Rtmp8Ya5DI’   ‘~/tmp/scratch/Rtmp8fQlAZ’ ‘~/tmp/scratch/Rtmp9oCnaU’   ‘~/tmp/scratch/Rtmp9uzdpP’ ‘~/tmp/scratch/RtmpAWwmQb’   ‘~/tmp/scratch/RtmpAtYhWl’ ‘~/tmp/scratch/RtmpAvOjCs’   ‘~/tmp/scratch/RtmpBTyJZK’ ‘~/tmp/scratch/RtmpBbt5GW’   ‘~/tmp/scratch/RtmpCafZLw’ ‘~/tmp/scratch/RtmpCd05Km’   ‘~/tmp/scratch/RtmpCfY8yq’ ‘~/tmp/scratch/RtmpCtqVeB’   ‘~/tmp/scratch/RtmpDAmpeY’ ‘~/tmp/scratch/RtmpE7aedG’   ‘~/tmp/scratch/RtmpEkTGMw’ ‘~/tmp/scratch/RtmpFTSr0f’   ‘~/tmp/scratch/RtmpFwTqC0’ ‘~/tmp/scratch/RtmpGH8Y76’   ‘~/tmp/scratch/RtmpGKFdxl’ ‘~/tmp/scratch/RtmpGk9wFE’   ‘~/tmp/scratch/RtmpH2E0Rv’ ‘~/tmp/scratch/RtmpHGcczh’   ‘~/tmp/scratch/RtmpILCJzW’ ‘~/tmp/scratch/RtmpIPWieu’   ‘~/tmp/scratch/RtmpIRaTt7’ ‘~/tmp/scratch/RtmpIXyzc6’   ‘~/tmp/scratch/RtmpJE4yhL’ ‘~/tmp/scratch/RtmpKBVwVT’   ‘~/tmp/scratch/RtmpKE0vIu’ ‘~/tmp/scratch/RtmpKThDSe’   ‘~/tmp/scratch/RtmpKoqkeR’ ‘~/tmp/scratch/RtmpLUYgkL’   ‘~/tmp/scratch/RtmpLzAe7R’ ‘~/tmp/scratch/RtmpM6mReg’   ‘~/tmp/scratch/RtmpMorXKo’ ‘~/tmp/scratch/RtmpNlm2gH’   ‘~/tmp/scratch/RtmpOYbgI3’ ‘~/tmp/scratch/RtmpPODSJg’   ‘~/tmp/scratch/RtmpQO12Zx’ ‘~/tmp/scratch/RtmpQgy2c5’   ‘~/tmp/scratch/RtmpQmyDMN’ ‘~/tmp/scratch/RtmpR3q699’   ‘~/tmp/scratch/RtmpTYdAlz’ ‘~/tmp/scratch/RtmpTjjtkJ’   ‘~/tmp/scratch/RtmpTqaOOc’ ‘~/tmp/scratch/RtmpUKJRZL’   ‘~/tmp/scratch/RtmpUKtyVP’ ‘~/tmp/scratch/RtmpUS8Bk8’   ‘~/tmp/scratch/RtmpUSenSk’ ‘~/tmp/scratch/RtmpVI6Hfl’   ‘~/tmp/scratch/RtmpVqfm9e’ ‘~/tmp/scratch/RtmpVuMbo4’   ‘~/tmp/scratch/RtmpXHl6A8’ ‘~/tmp/scratch/RtmpXUwY5w’   ‘~/tmp/scratch/RtmpXqO63v’ ‘~/tmp/scratch/RtmpY61feW’   ‘~/tmp/scratch/RtmpYEQbLF’ ‘~/tmp/scratch/RtmpYLDxEq’   ‘~/tmp/scratch/RtmpYuUSWg’ ‘~/tmp/scratch/RtmpYvwxmW’   ‘~/tmp/scratch/RtmpZ4uCmX’ ‘~/tmp/scratch/RtmpZYTBIv’   ‘~/tmp/scratch/RtmpZss1BL’ ‘~/tmp/scratch/RtmpZtIHKT’   ‘~/tmp/scratch/RtmpaBbq0O’ ‘~/tmp/scratch/RtmpauGoY9’   ‘~/tmp/scratch/Rtmpazk4FC’ ‘~/tmp/scratch/RtmpbFPcAo’   ‘~/tmp/scratch/RtmpdJXTqJ’ ‘~/tmp/scratch/RtmpdTmin3’   ‘~/tmp/scratch/RtmpdZU1Mu’ ‘~/tmp/scratch/Rtmpdyu9vH’   ‘~/tmp/scratch/Rtmpdzu9pn’ ‘~/tmp/scratch/RtmpeC4nJW’   ‘~/tmp/scratch/Rtmpg2eUcL’ ‘~/tmp/scratch/RtmphVrNu9’   ‘~/tmp/scratch/RtmpirfMpc’ ‘~/tmp/scratch/Rtmpj6DSpT’   ‘~/tmp/scratch/RtmpjMUwLs’ ‘~/tmp/scratch/Rtmpkt20rh’   ‘~/tmp/scratch/RtmplSb3E6’ ‘~/tmp/scratch/Rtmpm9jXYl’   ‘~/tmp/scratch/RtmpmY0t1e’ ‘~/tmp/scratch/RtmpnI63fJ’   ‘~/tmp/scratch/RtmpnnzHBh’ ‘~/tmp/scratch/RtmpnrO7tu’   ‘~/tmp/scratch/Rtmpo7wqq8’ ‘~/tmp/scratch/RtmpoWnG7c’   ‘~/tmp/scratch/Rtmpp2D3TT’ ‘~/tmp/scratch/Rtmpq1R67h’   ‘~/tmp/scratch/RtmpqwfRZb’ ‘~/tmp/scratch/Rtmpr2kbfz’   ‘~/tmp/scratch/RtmprHwFMy’ ‘~/tmp/scratch/RtmprgxOVZ’   ‘~/tmp/scratch/RtmproHrU5’ ‘~/tmp/scratch/RtmpsnALqa’   ‘~/tmp/scratch/RtmpswIjpU’ ‘~/tmp/scratch/Rtmpth5fU6’   ‘~/tmp/scratch/Rtmptoq2Sx’ ‘~/tmp/scratch/Rtmpu9r9RH’   ‘~/tmp/scratch/RtmpuWNjLp’ ‘~/tmp/scratch/RtmpuZV2Tj’   ‘~/tmp/scratch/RtmpvAaooz’ ‘~/tmp/scratch/RtmpybGX2d’   ‘~/tmp/scratch/RtmpyjshgQ’ ‘~/tmp/scratch/Rtmpyq6RMe’   ‘~/tmp/scratch/RtmpzT5hsB’ ‘~/tmp/scratch/RtmpzlTO2g’   ‘~/tmp/scratch/xvfb-run.0cHoSU’ ‘~/tmp/scratch/xvfb-run.1exCVV’   ‘~/tmp/scratch/xvfb-run.5k4Cmg’ ‘~/tmp/scratch/xvfb-run.6i4YOG’   ‘~/tmp/scratch/xvfb-run.6o8lun’ ‘~/tmp/scratch/xvfb-run.7vpj62’   ‘~/tmp/scratch/xvfb-run.BSpRlt’ ‘~/tmp/scratch/xvfb-run.CQAHB6’   ‘~/tmp/scratch/xvfb-run.CZe18V’ ‘~/tmp/scratch/xvfb-run.OXfaxJ’   ‘~/tmp/scratch/xvfb-run.OXnKCC’ ‘~/tmp/scratch/xvfb-run.PZH8X7’   ‘~/tmp/scratch/xvfb-run.PeXqXd’ ‘~/tmp/scratch/xvfb-run.QjOmHb’   ‘~/tmp/scratch/xvfb-run.RDqEjB’ ‘~/tmp/scratch/xvfb-run.Spot9o’   ‘~/tmp/scratch/xvfb-run.VQmXQw’ ‘~/tmp/scratch/xvfb-run.WQRl9U’   ‘~/tmp/scratch/xvfb-run.WZizoN’ ‘~/tmp/scratch/xvfb-run.WmWV4r’   ‘~/tmp/scratch/xvfb-run.XfWUFa’ ‘~/tmp/scratch/xvfb-run.XiF0UR’   ‘~/tmp/scratch/xvfb-run.XwgRml’ ‘~/tmp/scratch/xvfb-run.Z7ka2K’   ‘~/tmp/scratch/xvfb-run.ZOm7NB’ ‘~/tmp/scratch/xvfb-run.akiMpV’   ‘~/tmp/scratch/xvfb-run.am6jWN’ ‘~/tmp/scratch/xvfb-run.b3WUWA’   ‘~/tmp/scratch/xvfb-run.clOZEV’ ‘~/tmp/scratch/xvfb-run.gL9xJh’   ‘~/tmp/scratch/xvfb-run.gYXrrN’ ‘~/tmp/scratch/xvfb-run.ikJBtb’   ‘~/tmp/scratch/xvfb-run.j69pY8’ ‘~/tmp/scratch/xvfb-run.kRo6iG’   ‘~/tmp/scratch/xvfb-run.lE2vD0’ ‘~/tmp/scratch/xvfb-run.n3Xf2q’   ‘~/tmp/scratch/xvfb-run.nyyPBE’ ‘~/tmp/scratch/xvfb-run.oWXLMq’   ‘~/tmp/scratch/xvfb-run.qkpbQm’ ‘~/tmp/scratch/xvfb-run.r1XJfk’   ‘~/tmp/scratch/xvfb-run.uBsyuS’ ‘~/tmp/scratch/xvfb-run.uou7xC’   ‘~/tmp/scratch/xvfb-run.vAQ0PT’ ‘~/tmp/scratch/xvfb-run.wDgjmF’   ‘~/tmp/scratch/xvfb-run.wFGQSG’ ‘~/tmp/scratch/xvfb-run.wWUPfY’   ‘~/tmp/scratch/xvfb-run.wwgjeX’ ‘~/tmp/scratch/xvfb-run.yOzG7a’   ‘~/tmp/scratch/xvfb-run.yTmtcl’ ‘~/tmp/scratch/xvfb-run.z6C4nv’   ‘~/tmp/scratch/xvfb-run.zCBwFL’
• DONE

Status: 1 NOTE