• using R Under development (unstable) (2026-07-31 r90332)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-08-01 18:15:46 UTC
• checking for file ‘syntenyPlotteR/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘syntenyPlotteR’ version ‘1.0.0’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [2s/2s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘syntenyPlotteR’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [2s/2s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the package can be unloaded cleanly ... [1s/2s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/2s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/2s] OK
• checking loading without being on the library search path ... [1s/2s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [7s/8s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [8s/10s] OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [1s/2s] OK
• checking PDF version of manual ... [4s/5s] OK
• checking HTML version of manual ... [0s/1s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0TJSSs’ ‘~/tmp/scratch/Rtmp1NGS9y’   ‘~/tmp/scratch/Rtmp1XIsxB’ ‘~/tmp/scratch/Rtmp1llSQz’   ‘~/tmp/scratch/Rtmp1sVeHD’ ‘~/tmp/scratch/Rtmp3JI3sF’   ‘~/tmp/scratch/Rtmp4ZOa3x’ ‘~/tmp/scratch/Rtmp5DZ0hq’   ‘~/tmp/scratch/Rtmp5H1KOO’ ‘~/tmp/scratch/Rtmp63MHyc’   ‘~/tmp/scratch/Rtmp6bJw5p’ ‘~/tmp/scratch/Rtmp7ZmhvZ’   ‘~/tmp/scratch/Rtmp8AKSfr’ ‘~/tmp/scratch/Rtmp9FO7xT’   ‘~/tmp/scratch/Rtmp9i9odm’ ‘~/tmp/scratch/Rtmp9qbTNl’   ‘~/tmp/scratch/RtmpBMDeb8’ ‘~/tmp/scratch/RtmpBkr6C9’   ‘~/tmp/scratch/RtmpBty7RH’ ‘~/tmp/scratch/RtmpByYyaZ’   ‘~/tmp/scratch/RtmpCA5ubu’ ‘~/tmp/scratch/RtmpCPyWVB’   ‘~/tmp/scratch/RtmpDUaPBs’ ‘~/tmp/scratch/RtmpEZMNYP’   ‘~/tmp/scratch/RtmpF9aNFZ’ ‘~/tmp/scratch/RtmpFbXQx0’   ‘~/tmp/scratch/RtmpFhg5mH’ ‘~/tmp/scratch/RtmpG64i9Q’   ‘~/tmp/scratch/RtmpGKjRhu’ ‘~/tmp/scratch/RtmpGlTM83’   ‘~/tmp/scratch/RtmpH3oV2E’ ‘~/tmp/scratch/RtmpHLTZfa’   ‘~/tmp/scratch/RtmpHTJD7V’ ‘~/tmp/scratch/RtmpHZOO0W’   ‘~/tmp/scratch/RtmpHwbktg’ ‘~/tmp/scratch/RtmpI3WW6f’   ‘~/tmp/scratch/RtmpIfYzou’ ‘~/tmp/scratch/RtmpKI5CfR’   ‘~/tmp/scratch/RtmpKJQfRG’ ‘~/tmp/scratch/RtmpKcGVib’   ‘~/tmp/scratch/RtmpLekv9P’ ‘~/tmp/scratch/RtmpMZKYvw’   ‘~/tmp/scratch/RtmpMd0TX1’ ‘~/tmp/scratch/RtmpMk3IDD’   ‘~/tmp/scratch/RtmpN1SjPd’ ‘~/tmp/scratch/RtmpN7p51v’   ‘~/tmp/scratch/RtmpOFSmBc’ ‘~/tmp/scratch/RtmpOVqLG1’   ‘~/tmp/scratch/RtmpOgRx19’ ‘~/tmp/scratch/RtmpOh8OOc’   ‘~/tmp/scratch/RtmpPZTxRP’ ‘~/tmp/scratch/RtmpR52zVq’   ‘~/tmp/scratch/RtmpRW36q6’ ‘~/tmp/scratch/RtmpS5cVZv’   ‘~/tmp/scratch/RtmpS6puNU’ ‘~/tmp/scratch/RtmpSjNi8X’   ‘~/tmp/scratch/RtmpT7wF8z’ ‘~/tmp/scratch/RtmpTUB07A’   ‘~/tmp/scratch/RtmpTearrv’ ‘~/tmp/scratch/RtmpUkSF2k’   ‘~/tmp/scratch/RtmpVCQhRF’ ‘~/tmp/scratch/RtmpVRo1c9’   ‘~/tmp/scratch/RtmpVqpX0k’ ‘~/tmp/scratch/RtmpWFntIc’   ‘~/tmp/scratch/RtmpWa94dU’ ‘~/tmp/scratch/RtmpX4e1yO’   ‘~/tmp/scratch/RtmpXAZagF’ ‘~/tmp/scratch/RtmpXcNxkd’   ‘~/tmp/scratch/RtmpYXhaiM’ ‘~/tmp/scratch/RtmpYsXvI9’   ‘~/tmp/scratch/RtmpYwatnM’ ‘~/tmp/scratch/RtmpZWvWAK’   ‘~/tmp/scratch/RtmpaOKoto’ ‘~/tmp/scratch/RtmpaU8Fbf’   ‘~/tmp/scratch/RtmpazrUsp’ ‘~/tmp/scratch/RtmpbZvs0f’   ‘~/tmp/scratch/RtmpcJgXeW’ ‘~/tmp/scratch/RtmpciYfpQ’   ‘~/tmp/scratch/RtmpdJHjMB’ ‘~/tmp/scratch/RtmpdMzJ0b’   ‘~/tmp/scratch/Rtmpe0T1Hj’ ‘~/tmp/scratch/RtmpeIB2YU’   ‘~/tmp/scratch/RtmpezIJHB’ ‘~/tmp/scratch/RtmpfqI6W1’   ‘~/tmp/scratch/Rtmpg5PIA7’ ‘~/tmp/scratch/Rtmph7ZxPd’   ‘~/tmp/scratch/RtmphNfONj’ ‘~/tmp/scratch/RtmpiGbPp0’   ‘~/tmp/scratch/RtmpiS3X3G’ ‘~/tmp/scratch/RtmpimVUDO’   ‘~/tmp/scratch/RtmpjPChFq’ ‘~/tmp/scratch/RtmpjPQzLG’   ‘~/tmp/scratch/RtmpjQBXDZ’ ‘~/tmp/scratch/Rtmpjlfuxn’   ‘~/tmp/scratch/Rtmpjv6L9A’ ‘~/tmp/scratch/RtmpkifCT6’   ‘~/tmp/scratch/RtmplAZL44’ ‘~/tmp/scratch/RtmplIucCe’   ‘~/tmp/scratch/RtmpmEjAy7’ ‘~/tmp/scratch/RtmpmF1tjq’   ‘~/tmp/scratch/Rtmpn23PK7’ ‘~/tmp/scratch/RtmppLjSw8’   ‘~/tmp/scratch/RtmpqXPJR0’ ‘~/tmp/scratch/RtmprIqEDf’   ‘~/tmp/scratch/RtmprXoCuv’ ‘~/tmp/scratch/RtmprqLYxF’   ‘~/tmp/scratch/RtmpsYzplw’ ‘~/tmp/scratch/Rtmpt3PDaU’   ‘~/tmp/scratch/RtmptNBRyZ’ ‘~/tmp/scratch/Rtmpts7KoR’   ‘~/tmp/scratch/RtmpuJfTi6’ ‘~/tmp/scratch/RtmpuslvY9’   ‘~/tmp/scratch/RtmpvL6k4U’ ‘~/tmp/scratch/RtmpvPK9dh’   ‘~/tmp/scratch/Rtmpw4taoX’ ‘~/tmp/scratch/RtmpwEzK5I’   ‘~/tmp/scratch/RtmpwYlLIb’ ‘~/tmp/scratch/RtmpwkW1lH’   ‘~/tmp/scratch/Rtmpx9lRhc’ ‘~/tmp/scratch/RtmpxPGqqm’   ‘~/tmp/scratch/RtmpxVn4b4’ ‘~/tmp/scratch/RtmpxtQub4’   ‘~/tmp/scratch/Rtmpy1JzhM’ ‘~/tmp/scratch/Rtmpy6hxMX’   ‘~/tmp/scratch/Rtmpy93fGl’ ‘~/tmp/scratch/RtmpzGReVq’   ‘~/tmp/scratch/RtmpzLGPH5’ ‘~/tmp/scratch/RtmpznY0UC’   ‘~/tmp/scratch/xvfb-run.Ahismr’ ‘~/tmp/scratch/xvfb-run.BCVve0’   ‘~/tmp/scratch/xvfb-run.BdzsOv’ ‘~/tmp/scratch/xvfb-run.Bj8G5J’   ‘~/tmp/scratch/xvfb-run.CAtHCl’ ‘~/tmp/scratch/xvfb-run.DeFrAp’   ‘~/tmp/scratch/xvfb-run.ErtGWe’ ‘~/tmp/scratch/xvfb-run.FgH4pF’   ‘~/tmp/scratch/xvfb-run.GXzEcF’ ‘~/tmp/scratch/xvfb-run.HPD2Xt’   ‘~/tmp/scratch/xvfb-run.LVfVGB’ ‘~/tmp/scratch/xvfb-run.NKvjZl’   ‘~/tmp/scratch/xvfb-run.OYWwHk’ ‘~/tmp/scratch/xvfb-run.PVU4yz’   ‘~/tmp/scratch/xvfb-run.S1YjhA’ ‘~/tmp/scratch/xvfb-run.S9jjAl’   ‘~/tmp/scratch/xvfb-run.Sbl4Kx’ ‘~/tmp/scratch/xvfb-run.TMUBcr’   ‘~/tmp/scratch/xvfb-run.U7rZUB’ ‘~/tmp/scratch/xvfb-run.ViAFs0’   ‘~/tmp/scratch/xvfb-run.WqoAaT’ ‘~/tmp/scratch/xvfb-run.XhI949’   ‘~/tmp/scratch/xvfb-run.aJiIVN’ ‘~/tmp/scratch/xvfb-run.cUiyYQ’   ‘~/tmp/scratch/xvfb-run.cnvVL7’ ‘~/tmp/scratch/xvfb-run.iaaadg’   ‘~/tmp/scratch/xvfb-run.inUewi’ ‘~/tmp/scratch/xvfb-run.m3Pg3z’   ‘~/tmp/scratch/xvfb-run.nPgzaf’ ‘~/tmp/scratch/xvfb-run.nvMusI’   ‘~/tmp/scratch/xvfb-run.oMWzJJ’ ‘~/tmp/scratch/xvfb-run.pCZkmD’   ‘~/tmp/scratch/xvfb-run.pUrfM4’ ‘~/tmp/scratch/xvfb-run.qsi1sX’   ‘~/tmp/scratch/xvfb-run.qxGm4O’ ‘~/tmp/scratch/xvfb-run.rCVlIT’   ‘~/tmp/scratch/xvfb-run.riH6sC’ ‘~/tmp/scratch/xvfb-run.rpFjYn’   ‘~/tmp/scratch/xvfb-run.tZBNLV’ ‘~/tmp/scratch/xvfb-run.tkAcxO’   ‘~/tmp/scratch/xvfb-run.uMCdqH’ ‘~/tmp/scratch/xvfb-run.v3PkCI’   ‘~/tmp/scratch/xvfb-run.vAUDmU’ ‘~/tmp/scratch/xvfb-run.wFbNEc’   ‘~/tmp/scratch/xvfb-run.xU7nE8’ ‘~/tmp/scratch/xvfb-run.xhbZIb’   ‘~/tmp/scratch/xvfb-run.xxaeIm’
• DONE

Status: 1 NOTE