• using R Under development (unstable) (2025-12-19 r89206)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-15 (Debian 15.2.0-11) 15.2.0     GNU Fortran (Debian 15.2.0-11) 15.2.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8
• checking for file ‘strvalidator/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘strvalidator’ version ‘2.4.2’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/2s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘strvalidator’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [3s/4s] OK
• checking whether the package can be loaded with stated dependencies ... [3s/3s] OK
• checking whether the package can be unloaded cleanly ... [3s/5s] OK
• checking whether the namespace can be loaded with stated dependencies ... [3s/3s] OK
• checking whether the namespace can be unloaded cleanly ... [3s/4s] OK
• checking loading without being on the library search path ... [3s/4s] OK
• checking whether startup messages can be suppressed ... [3s/4s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [94s/127s] OK
• checking Rd files ... [1s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking data for ASCII and uncompressed saves ... OK
• checking examples ... [5s/6s] ERROR Running examples in ‘strvalidator-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: calculateHb > ### Title: Calculate Heterozygote Balance > ### Aliases: calculateHb > > ### ** Examples > > data(ref2) > data(set2) > # Calculate average balances. > calculateHb(data = set2, ref = ref2) 'kit' not provided. Attempting auto detection. Detected kit(s): SGMPlus Extracting known alleles from dataset... Using 'fast' allele filtering method. This method discards NA alleles/loci/samples. 1 "NA" in 'Allele' converted to NA Removed 1 rows where Allele=<NA> Estimating size of alleles... Error in `[.data.table`(DT, !is.na(Height), `:=`(Peaks, .N), list(Sample.Name, :   attempt access index 6/6 in VECTOR_ELT Calls: calculateHb -> [ -> [.data.table Execution halted
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [37s/47s] ERROR   Running ‘testthat.R’ [36s/47s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > ################################################################################   > # TODO LIST   > # TODO: Add test for calculateResultType and other functions.   >   > ################################################################################   > # CHANGE LOG   > # 24.12.2014: Second try, update to thestthat 0.8.1   > # 05.12.2013: Updated to thestthat 0.8   >   >   > # Load testthat package.   > library(testthat)   >   > # Run all tests.   > test_check(package = "strvalidator")   Loading required package: strvalidator   STR-validator 2.4.2 loaded!   Saving _problems/test-calculateAllT-51.R   Saving _problems/test-calculateHb-53.R   Saving _problems/test-calculateHeight-214.R   Saving _problems/test-calculateLb-38.R   Saving _problems/test-calculateStatistics-38.R   [ FAIL 5 | WARN 1 | SKIP 0 | PASS 3576 ]      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test-calculateAllT.r:46:3'): calculateAllT ──────────────────────────   Error in ``[.data.table`(DT, , `:=`(Observed, length(unique(Allele))), by = list(Sample.Name, Marker))`: attempt access index 3/3 in VECTOR_ELT   Backtrace:       ▆    1. ├─base::suppressMessages(...) at test-calculateAllT.r:46:3    2. │ └─base::withCallingHandlers(...)    3. └─strvalidator::calculateHeight(...)    4. └─strvalidator::calculateCopies(data = ref)    5. ├─...[]    6. └─data.table:::`[.data.table`(...)   ── Error ('test-calculateHb.r:53:3'): calculateHb ──────────────────────────────   Error in ``[.data.table`(DT, !is.na(Height), `:=`(Peaks, .N), list(Sample.Name, Marker))`: attempt access index 6/6 in VECTOR_ELT   Backtrace:       ▆    1. └─strvalidator::calculateHb(...) at test-calculateHb.r:53:3    2. ├─DT[!is.na(Height), `:=`(Peaks, .N), list(Sample.Name, Marker)]    3. └─data.table:::`[.data.table`(...)   ── Error ('test-calculateHeight.r:214:3'): calculateHeight ─────────────────────   Error in ``[.data.table`(DT, , `:=`(Peaks, sum(!is.na(Height))), by = list(Sample.Name))`: attempt access index 4/4 in VECTOR_ELT   Backtrace:       ▆    1. └─strvalidator::calculateHeight(...) at test-calculateHeight.r:214:3    2. ├─DT[, `:=`(Peaks, sum(!is.na(Height))), by = list(Sample.Name)]    3. └─data.table:::`[.data.table`(...)   ── Error ('test-calculateLb.r:34:3'): calculateLb ──────────────────────────────   Error in ``[.data.table`(res, , `:=`(Lb, TPH/TPPH), by = list(Sample.Name, Dye, Marker))`: attempt access index 6/6 in VECTOR_ELT   Backtrace:       ▆    1. └─strvalidator::calculateLb(...) at test-calculateLb.r:34:3    2. ├─res[, `:=`(Lb, TPH/TPPH), by = list(Sample.Name, Dye, Marker)]    3. └─data.table:::`[.data.table`(...)   ── Error ('test-calculateStatistics.r:38:3'): calculateStatistics ──────────────   Error in ``[.data.table`(DT, !is.na(Height), `:=`(Peaks, .N), list(Sample.Name, Marker))`: attempt access index 5/5 in VECTOR_ELT   Backtrace:       ▆    1. └─strvalidator::calculateHb(...) at test-calculateStatistics.r:38:3    2. ├─DT[!is.na(Height), `:=`(Peaks, .N), list(Sample.Name, Marker)]    3. └─data.table:::`[.data.table`(...)      [ FAIL 5 | WARN 1 | SKIP 0 | PASS 3576 ]   Error:   ! Test failures.   Execution halted
• checking PDF version of manual ... [7s/8s] OK
• checking HTML version of manual ... [6s/9s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 2 ERRORs