• using R Under development (unstable) (2026-07-31 r90332)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-08-01 18:08:46 UTC
• checking for file ‘stepdownfdp/DESCRIPTION’ ... OK
• this is package ‘stepdownfdp’ version ‘1.0.0’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/2s] NOTE Maintainer: ‘Arya Ebadi <aeba3842@uni.sydney.edu.au>’ The Description field contains   (2020) <arXiv:2011.11939>. Such setups include target-decoy competition Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘stepdownfdp’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/0s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
• checking loading without being on the library search path ... [0s/0s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [3s/4s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking examples ... [0s/1s] OK
• checking PDF version of manual ... [3s/5s] OK
• checking HTML version of manual ... [0s/0s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0bVISo’ ‘~/tmp/scratch/Rtmp0wjV9r’   ‘~/tmp/scratch/Rtmp1UHmh8’ ‘~/tmp/scratch/Rtmp2UbBMW’   ‘~/tmp/scratch/Rtmp2f0jjt’ ‘~/tmp/scratch/Rtmp3D19kW’   ‘~/tmp/scratch/Rtmp3gxKNn’ ‘~/tmp/scratch/Rtmp3wglbp’   ‘~/tmp/scratch/Rtmp4eAww7’ ‘~/tmp/scratch/Rtmp59dPNU’   ‘~/tmp/scratch/Rtmp6GTY5a’ ‘~/tmp/scratch/Rtmp6RLQAI’   ‘~/tmp/scratch/Rtmp9ra5dh’ ‘~/tmp/scratch/RtmpAfhgwS’   ‘~/tmp/scratch/RtmpBTFM4x’ ‘~/tmp/scratch/RtmpCLoQ3l’   ‘~/tmp/scratch/RtmpCrLHPS’ ‘~/tmp/scratch/RtmpDTrXYA’   ‘~/tmp/scratch/RtmpDswKWG’ ‘~/tmp/scratch/RtmpEFNTqN’   ‘~/tmp/scratch/RtmpERAjr5’ ‘~/tmp/scratch/RtmpESc59r’   ‘~/tmp/scratch/RtmpEyx5kc’ ‘~/tmp/scratch/RtmpFjhJzv’   ‘~/tmp/scratch/RtmpG5vknx’ ‘~/tmp/scratch/RtmpGn8G6v’   ‘~/tmp/scratch/RtmpHwvavh’ ‘~/tmp/scratch/RtmpIltpU8’   ‘~/tmp/scratch/RtmpIvGr6D’ ‘~/tmp/scratch/RtmpJIfFpK’   ‘~/tmp/scratch/RtmpJQingO’ ‘~/tmp/scratch/RtmpJbH4Ff’   ‘~/tmp/scratch/RtmpK1JJYU’ ‘~/tmp/scratch/RtmpKGi8s8’   ‘~/tmp/scratch/RtmpKiWQQt’ ‘~/tmp/scratch/RtmpL1PyV4’   ‘~/tmp/scratch/RtmpL50Oaq’ ‘~/tmp/scratch/RtmpLCnWfR’   ‘~/tmp/scratch/RtmpLW0gGJ’ ‘~/tmp/scratch/RtmpLbERpg’   ‘~/tmp/scratch/RtmpMSZwHM’ ‘~/tmp/scratch/RtmpMp7qw8’   ‘~/tmp/scratch/RtmpObUK79’ ‘~/tmp/scratch/RtmpPAv3JN’   ‘~/tmp/scratch/RtmpPROqpe’ ‘~/tmp/scratch/RtmpRwg0nM’   ‘~/tmp/scratch/RtmpSHvfkf’ ‘~/tmp/scratch/RtmpSPEIlf’   ‘~/tmp/scratch/RtmpT5L5oC’ ‘~/tmp/scratch/RtmpU3yiSt’   ‘~/tmp/scratch/RtmpUBPR11’ ‘~/tmp/scratch/RtmpVhNMza’   ‘~/tmp/scratch/RtmpXCgdaV’ ‘~/tmp/scratch/RtmpXD1NGQ’   ‘~/tmp/scratch/RtmpY9uOJm’ ‘~/tmp/scratch/RtmpYko5RE’   ‘~/tmp/scratch/RtmpYotayb’ ‘~/tmp/scratch/RtmpZ5CuxQ’   ‘~/tmp/scratch/RtmpZ60zss’ ‘~/tmp/scratch/RtmpaLe4kd’   ‘~/tmp/scratch/RtmpaUwM0R’ ‘~/tmp/scratch/RtmpbW1JV1’   ‘~/tmp/scratch/RtmpbjXNHY’ ‘~/tmp/scratch/RtmpcjYtxd’   ‘~/tmp/scratch/RtmpeQsrYG’ ‘~/tmp/scratch/RtmpfP9TyI’   ‘~/tmp/scratch/Rtmpfi8wJA’ ‘~/tmp/scratch/Rtmpi8rbDd’   ‘~/tmp/scratch/RtmpiEAnJ8’ ‘~/tmp/scratch/RtmpiETrtw’   ‘~/tmp/scratch/RtmpjBQtTk’ ‘~/tmp/scratch/RtmpjRDTV8’   ‘~/tmp/scratch/RtmpjSvdpj’ ‘~/tmp/scratch/RtmpjbLPt6’   ‘~/tmp/scratch/RtmpjxkLSK’ ‘~/tmp/scratch/RtmplsCJVq’   ‘~/tmp/scratch/Rtmpm5Q8Js’ ‘~/tmp/scratch/RtmpnL8T0R’   ‘~/tmp/scratch/Rtmpo3CpTL’ ‘~/tmp/scratch/RtmpozYRFx’   ‘~/tmp/scratch/Rtmpp4tK6R’ ‘~/tmp/scratch/RtmppXSZTw’   ‘~/tmp/scratch/Rtmppio1mU’ ‘~/tmp/scratch/Rtmpq7udZM’   ‘~/tmp/scratch/RtmprKGolS’ ‘~/tmp/scratch/RtmprL3skF’   ‘~/tmp/scratch/RtmprdvVa5’ ‘~/tmp/scratch/RtmpsRPbTS’   ‘~/tmp/scratch/RtmpsygHLN’ ‘~/tmp/scratch/RtmpusryGP’   ‘~/tmp/scratch/RtmpvHL1n8’ ‘~/tmp/scratch/RtmpvTk1CG’   ‘~/tmp/scratch/RtmpwEmKl7’ ‘~/tmp/scratch/RtmpwMdzPx’   ‘~/tmp/scratch/RtmpwrlLdy’ ‘~/tmp/scratch/Rtmpxl0SlP’   ‘~/tmp/scratch/RtmpxnKV4x’ ‘~/tmp/scratch/xvfb-run.1ysB3w’   ‘~/tmp/scratch/xvfb-run.4ljf73’ ‘~/tmp/scratch/xvfb-run.6VVdjP’   ‘~/tmp/scratch/xvfb-run.74ztsY’ ‘~/tmp/scratch/xvfb-run.BmG6IM’   ‘~/tmp/scratch/xvfb-run.EcfKtp’ ‘~/tmp/scratch/xvfb-run.JZPfTG’   ‘~/tmp/scratch/xvfb-run.OOLup3’ ‘~/tmp/scratch/xvfb-run.Oc2a0i’   ‘~/tmp/scratch/xvfb-run.TjHp5a’ ‘~/tmp/scratch/xvfb-run.UK0jqE’   ‘~/tmp/scratch/xvfb-run.UnCuYQ’ ‘~/tmp/scratch/xvfb-run.WnR7gg’   ‘~/tmp/scratch/xvfb-run.khgowV’ ‘~/tmp/scratch/xvfb-run.lKlhuf’   ‘~/tmp/scratch/xvfb-run.m1cWgN’ ‘~/tmp/scratch/xvfb-run.p0c7lJ’   ‘~/tmp/scratch/xvfb-run.plNnhp’ ‘~/tmp/scratch/xvfb-run.r14udw’   ‘~/tmp/scratch/xvfb-run.rOVPOY’ ‘~/tmp/scratch/xvfb-run.u02Ile’   ‘~/tmp/scratch/xvfb-run.ufyad2’ ‘~/tmp/scratch/xvfb-run.wRjHN0’
• DONE

Status: 2 NOTEs