Install log for 'stLMM'

* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’
* installing *source* package ‘stLMM’ ...
** this is package ‘stLMM’ version ‘0.0.3’
** package ‘stLMM’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
specified C++17
using C compiler: ‘gcc-16 (Debian 16.1.0-3) 16.1.0’
using C++ compiler: ‘g++-16 (Debian 16.1.0-3) 16.1.0’
using C++17
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpyBfsYJ/R.INSTALL3999413e7c48db/stLMM/src'
gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BayesLogit/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Matrix/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c Matrix_stubs.c -o Matrix_stubs.o
g++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BayesLogit/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Matrix/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c corModels.cpp -o corModels.o
gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BayesLogit/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Matrix/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c init.c -o init.o
g++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BayesLogit/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Matrix/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c nn.cpp -o nn.o
g++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BayesLogit/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Matrix/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c stLMM_common.cpp -o stLMM_common.o
stLMM_common.cpp: In function ‘double logDetFactor(cholmod_factor*)’:
stLMM_common.cpp:308:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  308 |   for(i = 0; i < L->nsuper; i++){
      |              ~~^~~~~~~~~~~
g++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BayesLogit/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Matrix/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c stLMM_covariance.cpp -o stLMM_covariance.o
g++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BayesLogit/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Matrix/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c stLMM_precision.cpp -o stLMM_precision.o
g++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BayesLogit/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Matrix/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c stLMM_predict.cpp -o stLMM_predict.o
g++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BayesLogit/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Matrix/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c stLMM_recover.cpp -o stLMM_recover.o
g++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BayesLogit/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Matrix/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c stLMM_sampler.cpp -o stLMM_sampler.o
g++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BayesLogit/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Matrix/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c stLMM_state.cpp -o stLMM_state.o
g++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BayesLogit/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Matrix/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c utils.cpp -o utils.o
g++-16 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -Wl,-O1 -o stLMM.so Matrix_stubs.o corModels.o init.o nn.o stLMM_common.o stLMM_covariance.o stLMM_precision.o stLMM_predict.o stLMM_recover.o stLMM_sampler.o stLMM_state.o utils.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lRblas -lgfortran -lm -latomic_asneeded -lquadmath -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpyBfsYJ/R.INSTALL3999413e7c48db/stLMM/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpyBfsYJ/R.INSTALL3999413e7c48db/stLMM/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpyBfsYJ/R.INSTALL3999413e7c48db/stLMM/src'
installing to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/00LOCK-stLMM/00new/stLMM/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (stLMM)