Install log for 'splikit'

* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’
* installing *source* package ‘splikit’ ...
** this is package ‘splikit’ version ‘2.3.1’
** package ‘splikit’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-16 (Debian 16-20260425-1) 16.0.1 20260425 (prerelease) [gcc-16 r16-8812-gd9c07462a22]’
make[1]: Entering directory '/tmp/Rtmpek3XVs/R.INSTALL14768c6852e0ce/splikit/src'
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -DARMA_64BIT_WORD=1 -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -DARMA_64BIT_WORD=1 -fpic  -g -O2 -Wall -pedantic -mtune=native   -c average_silhouette.cpp -o average_silhouette.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -DARMA_64BIT_WORD=1 -fpic  -g -O2 -Wall -pedantic -mtune=native   -c calcDeviances.cpp -o calcDeviances.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -DARMA_64BIT_WORD=1 -fpic  -g -O2 -Wall -pedantic -mtune=native   -c cpp_pseudoR2.cpp -o cpp_pseudoR2.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -DARMA_64BIT_WORD=1 -fpic  -g -O2 -Wall -pedantic -mtune=native   -c deviance_gene.cpp -o deviance_gene.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -DARMA_64BIT_WORD=1 -fpic  -g -O2 -Wall -pedantic -mtune=native   -c hvf_gene_expression.cpp -o hvf_gene_expression.o
hvf_gene_expression.cpp: In function ‘Rcpp::NumericVector standardizeSparse_variance_vst(SEXP, bool)’:
hvf_gene_expression.cpp:61:3: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
   61 |   for (int r = 0; r < nrow; ++r)
      |   ^~~
hvf_gene_expression.cpp:64:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
   64 |     NumericVector expectedVar(nrow, 0.0), sd(nrow, 1.0);
      |     ^~~~~~~~~~~~~
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -DARMA_64BIT_WORD=1 -fpic  -g -O2 -Wall -pedantic -mtune=native   -c make_m2_cpp.cpp -o make_m2_cpp.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -DARMA_64BIT_WORD=1 -fpic  -g -O2 -Wall -pedantic -mtune=native   -c row_variance.cpp -o row_variance.o
g++-16 -std=gnu++20 -shared -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -Wl,-O1 -o splikit.so RcppExports.o average_silhouette.o calcDeviances.o cpp_pseudoR2.o deviance_gene.o hvf_gene_expression.o make_m2_cpp.o row_variance.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lRblas -lgfortran -lm -latomic_asneeded -lquadmath -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/Rtmpek3XVs/R.INSTALL14768c6852e0ce/splikit/src'
make[1]: Entering directory '/tmp/Rtmpek3XVs/R.INSTALL14768c6852e0ce/splikit/src'
make[1]: Leaving directory '/tmp/Rtmpek3XVs/R.INSTALL14768c6852e0ce/splikit/src'
installing to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/00LOCK-splikit/00new/splikit/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (splikit)