• using R Under development (unstable) (2026-07-31 r90332)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-08-01 18:01:44 UTC
• checking for file ‘speedytax/DESCRIPTION’ ... OK
• this is package ‘speedytax’ version ‘1.0.4’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [2s/2s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘speedytax’ can be installed ... OK See the install log for details.
• used C++ compiler: ‘g++-16 (Debian 16.1.0-3) 16.1.0’
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... NOTE   Missing dependency on R >= 4.1.0 because package code uses the pipe   |> or function shorthand \(...) syntax added in R 4.1.0.   File(s) using such syntax:     ‘import_qiime2_tax_table.R’ ‘import_sintax_tax_table.R’
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [7s/8s] OK
• checking whether the package can be loaded with stated dependencies ... [6s/8s] OK
• checking whether the package can be unloaded cleanly ... [6s/8s] OK
• checking whether the namespace can be loaded with stated dependencies ... [6s/7s] OK
• checking whether the namespace can be unloaded cleanly ... [6s/8s] OK
• checking loading without being on the library search path ... [7s/9s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [28s/38s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking examples ... [7s/8s] OK
• checking PDF version of manual ... [4s/7s] OK
• checking HTML version of manual ... [0s/0s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp05s7V5’ ‘~/tmp/scratch/Rtmp0cXkRc’   ‘~/tmp/scratch/Rtmp1Hv3rn’ ‘~/tmp/scratch/Rtmp1voRYZ’   ‘~/tmp/scratch/Rtmp20rcoU’ ‘~/tmp/scratch/Rtmp2E98RY’   ‘~/tmp/scratch/Rtmp32R0TB’ ‘~/tmp/scratch/Rtmp4EliGN’   ‘~/tmp/scratch/Rtmp4X5ORY’ ‘~/tmp/scratch/Rtmp5EOvLb’   ‘~/tmp/scratch/Rtmp5PsWeL’ ‘~/tmp/scratch/Rtmp5VkBBg’   ‘~/tmp/scratch/Rtmp63Cl7D’ ‘~/tmp/scratch/Rtmp68v7Ms’   ‘~/tmp/scratch/Rtmp6SwWJv’ ‘~/tmp/scratch/Rtmp6UpgbD’   ‘~/tmp/scratch/Rtmp6e0XLH’ ‘~/tmp/scratch/Rtmp6zjqeU’   ‘~/tmp/scratch/Rtmp7WiqPa’ ‘~/tmp/scratch/Rtmp8VjYmH’   ‘~/tmp/scratch/Rtmp9DWeCD’ ‘~/tmp/scratch/RtmpA79g9L’   ‘~/tmp/scratch/RtmpADfIFU’ ‘~/tmp/scratch/RtmpADw9gB’   ‘~/tmp/scratch/RtmpAHqZS9’ ‘~/tmp/scratch/RtmpBF37YG’   ‘~/tmp/scratch/RtmpBhAoEG’ ‘~/tmp/scratch/RtmpCSoHu8’   ‘~/tmp/scratch/RtmpCUnGVq’ ‘~/tmp/scratch/RtmpCgScBl’   ‘~/tmp/scratch/RtmpClRoSM’ ‘~/tmp/scratch/RtmpDJKl0r’   ‘~/tmp/scratch/RtmpDepfv5’ ‘~/tmp/scratch/RtmpE1rVJK’   ‘~/tmp/scratch/RtmpE6bjKQ’ ‘~/tmp/scratch/RtmpEFDfvG’   ‘~/tmp/scratch/RtmpENZ3i5’ ‘~/tmp/scratch/RtmpERsHOa’   ‘~/tmp/scratch/RtmpEWpS8i’ ‘~/tmp/scratch/RtmpGWROeM’   ‘~/tmp/scratch/RtmpGYlvAw’ ‘~/tmp/scratch/RtmpGZ1CuW’   ‘~/tmp/scratch/RtmpHRYA9A’ ‘~/tmp/scratch/RtmpHvhikk’   ‘~/tmp/scratch/RtmpIIUlbh’ ‘~/tmp/scratch/RtmpIXrrjM’   ‘~/tmp/scratch/RtmpJ2x6P8’ ‘~/tmp/scratch/RtmpJB0NSh’   ‘~/tmp/scratch/RtmpJlp6s4’ ‘~/tmp/scratch/RtmpJmqNvg’   ‘~/tmp/scratch/RtmpK63q0E’ ‘~/tmp/scratch/RtmpKVDSbX’   ‘~/tmp/scratch/RtmpKZqTKh’ ‘~/tmp/scratch/RtmpKnpOtA’   ‘~/tmp/scratch/RtmpL1aFVa’ ‘~/tmp/scratch/RtmpLfRUMC’   ‘~/tmp/scratch/RtmpLpmBdE’ ‘~/tmp/scratch/RtmpM46UoE’   ‘~/tmp/scratch/RtmpMEuxbM’ ‘~/tmp/scratch/RtmpMHSIti’   ‘~/tmp/scratch/RtmpMxxOg8’ ‘~/tmp/scratch/RtmpNNZpov’   ‘~/tmp/scratch/RtmpNmAaFQ’ ‘~/tmp/scratch/RtmpO9S0F5’   ‘~/tmp/scratch/RtmpORoDMP’ ‘~/tmp/scratch/RtmpQWoTxJ’   ‘~/tmp/scratch/RtmpQYelG3’ ‘~/tmp/scratch/RtmpQw9qGX’   ‘~/tmp/scratch/RtmpSWZsbE’ ‘~/tmp/scratch/RtmpSoTIrQ’   ‘~/tmp/scratch/RtmpTK0XcU’ ‘~/tmp/scratch/RtmpTkQn3G’   ‘~/tmp/scratch/RtmpU8WRdh’ ‘~/tmp/scratch/RtmpUSCZVS’   ‘~/tmp/scratch/RtmpV6LrSM’ ‘~/tmp/scratch/RtmpVB1joM’   ‘~/tmp/scratch/RtmpX9M3Wj’ ‘~/tmp/scratch/RtmpXNUxLx’   ‘~/tmp/scratch/RtmpYoNkfn’ ‘~/tmp/scratch/RtmpZ5BHU1’   ‘~/tmp/scratch/RtmpZ9vkYT’ ‘~/tmp/scratch/RtmpZJnjje’   ‘~/tmp/scratch/RtmpZkx1dC’ ‘~/tmp/scratch/Rtmpb4ffrm’   ‘~/tmp/scratch/RtmpbDhPqk’ ‘~/tmp/scratch/RtmpbT1nyJ’   ‘~/tmp/scratch/RtmpbVmwvI’ ‘~/tmp/scratch/RtmpbW0khI’   ‘~/tmp/scratch/Rtmpc2Agvc’ ‘~/tmp/scratch/Rtmpc4CB59’   ‘~/tmp/scratch/RtmpcXsccr’ ‘~/tmp/scratch/Rtmpcj8mCC’   ‘~/tmp/scratch/RtmpcrbYf0’ ‘~/tmp/scratch/RtmpdjrKny’   ‘~/tmp/scratch/RtmpexHBTW’ ‘~/tmp/scratch/Rtmpez3puu’   ‘~/tmp/scratch/RtmpfOqIX9’ ‘~/tmp/scratch/RtmpfS69gI’   ‘~/tmp/scratch/RtmphIktxR’ ‘~/tmp/scratch/RtmphKGOhv’   ‘~/tmp/scratch/Rtmpib803E’ ‘~/tmp/scratch/RtmpilFRmQ’   ‘~/tmp/scratch/Rtmpj1HDiC’ ‘~/tmp/scratch/Rtmpj9OC9B’   ‘~/tmp/scratch/RtmpjN5UBw’ ‘~/tmp/scratch/RtmpjZ3cOV’   ‘~/tmp/scratch/Rtmpjai5eI’ ‘~/tmp/scratch/RtmpjcFWkI’   ‘~/tmp/scratch/RtmpjeWvgi’ ‘~/tmp/scratch/Rtmpjis0cv’   ‘~/tmp/scratch/RtmpkC9la1’ ‘~/tmp/scratch/RtmpkTOl5W’   ‘~/tmp/scratch/Rtmpkgnoz8’ ‘~/tmp/scratch/RtmpkiGQ6y’   ‘~/tmp/scratch/RtmpkmcnyA’ ‘~/tmp/scratch/Rtmpknpkn5’   ‘~/tmp/scratch/RtmpkqpELH’ ‘~/tmp/scratch/RtmplXbcr3’   ‘~/tmp/scratch/RtmplyOAYV’ ‘~/tmp/scratch/RtmpmWh9pj’   ‘~/tmp/scratch/RtmpmXgSx4’ ‘~/tmp/scratch/RtmpmdaauO’   ‘~/tmp/scratch/RtmpnAHZqm’ ‘~/tmp/scratch/RtmpnOAJPb’   ‘~/tmp/scratch/RtmpnZg6hX’ ‘~/tmp/scratch/RtmpoKoFty’   ‘~/tmp/scratch/RtmpoVYc0O’ ‘~/tmp/scratch/RtmpopiX3U’   ‘~/tmp/scratch/RtmppC6DZd’ ‘~/tmp/scratch/Rtmpph5qLq’   ‘~/tmp/scratch/RtmppiL0wa’ ‘~/tmp/scratch/RtmppkkKmv’   ‘~/tmp/scratch/RtmppsFjBa’ ‘~/tmp/scratch/Rtmpq4MOIk’   ‘~/tmp/scratch/RtmpqZJE1m’ ‘~/tmp/scratch/RtmpqoC6ML’   ‘~/tmp/scratch/RtmpsT5RLy’ ‘~/tmp/scratch/Rtmpszm547’   ‘~/tmp/scratch/Rtmpt8G58L’ ‘~/tmp/scratch/RtmptIXhmh’   ‘~/tmp/scratch/RtmptNfxy1’ ‘~/tmp/scratch/RtmptmLlJE’   ‘~/tmp/scratch/RtmpttPoJw’ ‘~/tmp/scratch/RtmpuJW9vO’   ‘~/tmp/scratch/Rtmpv5yssa’ ‘~/tmp/scratch/RtmpvYbne2’   ‘~/tmp/scratch/Rtmpw0Phkj’ ‘~/tmp/scratch/RtmpwAVlYu’   ‘~/tmp/scratch/RtmpwBmgol’ ‘~/tmp/scratch/Rtmpwlk2y5’   ‘~/tmp/scratch/Rtmpx1ky6M’ ‘~/tmp/scratch/RtmpxF8H9j’   ‘~/tmp/scratch/RtmpxI2Ca3’ ‘~/tmp/scratch/RtmpxsgHcG’   ‘~/tmp/scratch/Rtmpy13Ptl’ ‘~/tmp/scratch/RtmpyDCRwM’   ‘~/tmp/scratch/RtmpyTCBcg’ ‘~/tmp/scratch/RtmpymWI2P’   ‘~/tmp/scratch/quarto-sessiond2eb79d24aeb028’   ‘~/tmp/scratch/xvfb-run.19VDfP’ ‘~/tmp/scratch/xvfb-run.1OKrJ2’   ‘~/tmp/scratch/xvfb-run.2R36bW’ ‘~/tmp/scratch/xvfb-run.76UD3z’   ‘~/tmp/scratch/xvfb-run.BERuIh’ ‘~/tmp/scratch/xvfb-run.CGmkP5’   ‘~/tmp/scratch/xvfb-run.Ea9mxL’ ‘~/tmp/scratch/xvfb-run.HHECZ2’   ‘~/tmp/scratch/xvfb-run.HhNTp7’ ‘~/tmp/scratch/xvfb-run.ISWUi3’   ‘~/tmp/scratch/xvfb-run.Iv2oLc’ ‘~/tmp/scratch/xvfb-run.JFxtvR’   ‘~/tmp/scratch/xvfb-run.JMywix’ ‘~/tmp/scratch/xvfb-run.Jtv4qd’   ‘~/tmp/scratch/xvfb-run.JzBUv0’ ‘~/tmp/scratch/xvfb-run.LQq9Zb’   ‘~/tmp/scratch/xvfb-run.LuEx7m’ ‘~/tmp/scratch/xvfb-run.Mtac7y’   ‘~/tmp/scratch/xvfb-run.NmZJwp’ ‘~/tmp/scratch/xvfb-run.Nv3q8K’   ‘~/tmp/scratch/xvfb-run.PxLIVz’ ‘~/tmp/scratch/xvfb-run.QOnYft’   ‘~/tmp/scratch/xvfb-run.Qj3PrR’ ‘~/tmp/scratch/xvfb-run.RFHPDI’   ‘~/tmp/scratch/xvfb-run.RM69if’ ‘~/tmp/scratch/xvfb-run.S2I7O6’   ‘~/tmp/scratch/xvfb-run.UeqbmF’ ‘~/tmp/scratch/xvfb-run.VxKK3e’   ‘~/tmp/scratch/xvfb-run.W36sOr’ ‘~/tmp/scratch/xvfb-run.W4oJji’   ‘~/tmp/scratch/xvfb-run.YXul1M’ ‘~/tmp/scratch/xvfb-run.YqlU0T’   ‘~/tmp/scratch/xvfb-run.ZfWWML’ ‘~/tmp/scratch/xvfb-run.aFGuBn’   ‘~/tmp/scratch/xvfb-run.ahaxmn’ ‘~/tmp/scratch/xvfb-run.c51bX9’   ‘~/tmp/scratch/xvfb-run.dS3Jtu’ ‘~/tmp/scratch/xvfb-run.ddLyTb’   ‘~/tmp/scratch/xvfb-run.ePBUYh’ ‘~/tmp/scratch/xvfb-run.eWcTJJ’   ‘~/tmp/scratch/xvfb-run.ela1ke’ ‘~/tmp/scratch/xvfb-run.gUaXWL’   ‘~/tmp/scratch/xvfb-run.glLxjg’ ‘~/tmp/scratch/xvfb-run.hKyQdZ’   ‘~/tmp/scratch/xvfb-run.iikeaU’ ‘~/tmp/scratch/xvfb-run.ik14Id’   ‘~/tmp/scratch/xvfb-run.ky0keS’ ‘~/tmp/scratch/xvfb-run.n3rj9H’   ‘~/tmp/scratch/xvfb-run.nTuPky’ ‘~/tmp/scratch/xvfb-run.nVFfqi’   ‘~/tmp/scratch/xvfb-run.nd4zJ7’ ‘~/tmp/scratch/xvfb-run.odA5xQ’   ‘~/tmp/scratch/xvfb-run.pEXbaq’ ‘~/tmp/scratch/xvfb-run.q5Krw9’   ‘~/tmp/scratch/xvfb-run.q8Ltd6’ ‘~/tmp/scratch/xvfb-run.qRhRHU’   ‘~/tmp/scratch/xvfb-run.sDNdrE’ ‘~/tmp/scratch/xvfb-run.sKN1PI’   ‘~/tmp/scratch/xvfb-run.unT14d’ ‘~/tmp/scratch/xvfb-run.upJQnv’   ‘~/tmp/scratch/xvfb-run.vU84TG’ ‘~/tmp/scratch/xvfb-run.wBpd40’   ‘~/tmp/scratch/xvfb-run.xQj6fx’ ‘~/tmp/scratch/xvfb-run.yuRjia’
• DONE

Status: 2 NOTEs