• using R Under development (unstable) (2026-07-30 r90327)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-07-31 18:01:28 UTC
• checking for file ‘speedytax/DESCRIPTION’ ... OK
• this is package ‘speedytax’ version ‘1.0.4’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [2s/3s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘speedytax’ can be installed ... OK See the install log for details.
• used C++ compiler: ‘g++-16 (Debian 16.1.0-3) 16.1.0’
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... NOTE   Missing dependency on R >= 4.1.0 because package code uses the pipe   |> or function shorthand \(...) syntax added in R 4.1.0.   File(s) using such syntax:     ‘import_qiime2_tax_table.R’ ‘import_sintax_tax_table.R’
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [7s/8s] OK
• checking whether the package can be loaded with stated dependencies ... [6s/8s] OK
• checking whether the package can be unloaded cleanly ... [6s/9s] OK
• checking whether the namespace can be loaded with stated dependencies ... [6s/10s] OK
• checking whether the namespace can be unloaded cleanly ... [7s/9s] OK
• checking loading without being on the library search path ... [6s/8s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [28s/43s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking examples ... [7s/9s] OK
• checking PDF version of manual ... [4s/6s] OK
• checking HTML version of manual ... [0s/0s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0W35lV’ ‘~/tmp/scratch/Rtmp0grLYI’   ‘~/tmp/scratch/Rtmp1GOIkH’ ‘~/tmp/scratch/Rtmp1uaGJh’   ‘~/tmp/scratch/Rtmp2bnCii’ ‘~/tmp/scratch/Rtmp2yUCkc’   ‘~/tmp/scratch/Rtmp30ctFe’ ‘~/tmp/scratch/Rtmp3aeyZc’   ‘~/tmp/scratch/Rtmp3ukOy0’ ‘~/tmp/scratch/Rtmp4spFNQ’   ‘~/tmp/scratch/Rtmp5E6lnR’ ‘~/tmp/scratch/Rtmp5g94oS’   ‘~/tmp/scratch/Rtmp5nvKQv’ ‘~/tmp/scratch/Rtmp6JMbJq’   ‘~/tmp/scratch/Rtmp6RfDgj’ ‘~/tmp/scratch/Rtmp8Ao5kJ’   ‘~/tmp/scratch/Rtmp8NPYg8’ ‘~/tmp/scratch/Rtmp8OKz7Z’   ‘~/tmp/scratch/Rtmp8mk8oM’ ‘~/tmp/scratch/Rtmp8tCXOA’   ‘~/tmp/scratch/Rtmp9XVGXB’ ‘~/tmp/scratch/Rtmp9hFnKm’   ‘~/tmp/scratch/Rtmp9jDteX’ ‘~/tmp/scratch/Rtmp9xa54V’   ‘~/tmp/scratch/RtmpA08nvj’ ‘~/tmp/scratch/RtmpA1LGiT’   ‘~/tmp/scratch/RtmpAsc3h7’ ‘~/tmp/scratch/RtmpAv8HS4’   ‘~/tmp/scratch/RtmpBLORaW’ ‘~/tmp/scratch/RtmpBOv9pe’   ‘~/tmp/scratch/RtmpBhPwTi’ ‘~/tmp/scratch/RtmpBkS3kr’   ‘~/tmp/scratch/RtmpC0YEZK’ ‘~/tmp/scratch/RtmpC184wv’   ‘~/tmp/scratch/RtmpD2etKC’ ‘~/tmp/scratch/RtmpDWt0J5’   ‘~/tmp/scratch/RtmpDl81Mg’ ‘~/tmp/scratch/RtmpDylJVU’   ‘~/tmp/scratch/RtmpECrpO8’ ‘~/tmp/scratch/RtmpEP2qwc’   ‘~/tmp/scratch/RtmpFLoibW’ ‘~/tmp/scratch/RtmpFWzinn’   ‘~/tmp/scratch/RtmpFlwIfs’ ‘~/tmp/scratch/RtmpG0qbDW’   ‘~/tmp/scratch/RtmpG2nUrI’ ‘~/tmp/scratch/RtmpG7nE9o’   ‘~/tmp/scratch/RtmpGE95Zq’ ‘~/tmp/scratch/RtmpGyAwro’   ‘~/tmp/scratch/RtmpHKYLio’ ‘~/tmp/scratch/RtmpHMfQrY’   ‘~/tmp/scratch/RtmpI8M8tr’ ‘~/tmp/scratch/RtmpIEb9st’   ‘~/tmp/scratch/RtmpIKegtt’ ‘~/tmp/scratch/RtmpIs1qZk’   ‘~/tmp/scratch/RtmpIvtjv2’ ‘~/tmp/scratch/RtmpJJisoS’   ‘~/tmp/scratch/RtmpJd8m1A’ ‘~/tmp/scratch/RtmpKLB62n’   ‘~/tmp/scratch/RtmpKNZAJz’ ‘~/tmp/scratch/RtmpKwdn0n’   ‘~/tmp/scratch/RtmpL2FB8G’ ‘~/tmp/scratch/RtmpMGbzIP’   ‘~/tmp/scratch/RtmpMRqch5’ ‘~/tmp/scratch/RtmpMYE7XQ’   ‘~/tmp/scratch/RtmpNP7bmT’ ‘~/tmp/scratch/RtmpOLhHEs’   ‘~/tmp/scratch/RtmpOZsT5S’ ‘~/tmp/scratch/RtmpOjkH0z’   ‘~/tmp/scratch/RtmpP5azAy’ ‘~/tmp/scratch/RtmpQ3hojY’   ‘~/tmp/scratch/RtmpQ6WqY6’ ‘~/tmp/scratch/RtmpQKLJbu’   ‘~/tmp/scratch/RtmpRNa8ig’ ‘~/tmp/scratch/RtmpRaaaVp’   ‘~/tmp/scratch/RtmpRbgybD’ ‘~/tmp/scratch/RtmpRn12Ya’   ‘~/tmp/scratch/RtmpSAoOsY’ ‘~/tmp/scratch/RtmpTd8lOm’   ‘~/tmp/scratch/RtmpTpFuhC’ ‘~/tmp/scratch/RtmpU31BOB’   ‘~/tmp/scratch/RtmpUQM9YB’ ‘~/tmp/scratch/RtmpUmL7IC’   ‘~/tmp/scratch/RtmpUsjxVK’ ‘~/tmp/scratch/RtmpUwxpP6’   ‘~/tmp/scratch/RtmpV28MQ6’ ‘~/tmp/scratch/RtmpVE01iN’   ‘~/tmp/scratch/RtmpViEoQl’ ‘~/tmp/scratch/RtmpW3B8jR’   ‘~/tmp/scratch/RtmpWMv7YJ’ ‘~/tmp/scratch/RtmpWxyITe’   ‘~/tmp/scratch/RtmpXftPI5’ ‘~/tmp/scratch/RtmpY6KrKa’   ‘~/tmp/scratch/RtmpYRymWz’ ‘~/tmp/scratch/RtmpYik3Bh’   ‘~/tmp/scratch/RtmpYpx07H’ ‘~/tmp/scratch/RtmpZ1OSDA’   ‘~/tmp/scratch/RtmpZ2uDAC’ ‘~/tmp/scratch/RtmpZEy0TC’   ‘~/tmp/scratch/RtmpZITQ0M’ ‘~/tmp/scratch/RtmpaGUMBg’   ‘~/tmp/scratch/Rtmpb2uSLV’ ‘~/tmp/scratch/Rtmpb5Sjly’   ‘~/tmp/scratch/RtmpbSxJKm’ ‘~/tmp/scratch/Rtmpbri0JS’   ‘~/tmp/scratch/Rtmpc5Rv2e’ ‘~/tmp/scratch/Rtmpd8rxQs’   ‘~/tmp/scratch/RtmpeWMkye’ ‘~/tmp/scratch/RtmpejUsqa’   ‘~/tmp/scratch/Rtmpf0C6Xu’ ‘~/tmp/scratch/RtmpfsN6nI’   ‘~/tmp/scratch/RtmpgIq1cH’ ‘~/tmp/scratch/Rtmpgeo6kc’   ‘~/tmp/scratch/Rtmpgjok4m’ ‘~/tmp/scratch/Rtmpglb5Jy’   ‘~/tmp/scratch/RtmpiB8d8t’ ‘~/tmp/scratch/RtmpiJZQo8’   ‘~/tmp/scratch/RtmpivZQZZ’ ‘~/tmp/scratch/RtmpjaPerd’   ‘~/tmp/scratch/RtmpjitFZ4’ ‘~/tmp/scratch/RtmpkVcWIe’   ‘~/tmp/scratch/RtmpkYIVMO’ ‘~/tmp/scratch/RtmpkfsqR2’   ‘~/tmp/scratch/RtmpmXPRr5’ ‘~/tmp/scratch/RtmpmyA1h1’   ‘~/tmp/scratch/RtmpnVdx5Y’ ‘~/tmp/scratch/RtmpnfJgsj’   ‘~/tmp/scratch/Rtmppeh9c8’ ‘~/tmp/scratch/RtmppyN7kR’   ‘~/tmp/scratch/Rtmpq6vkPd’ ‘~/tmp/scratch/Rtmpq8eq1f’   ‘~/tmp/scratch/RtmpqHFYEe’ ‘~/tmp/scratch/RtmpqadZr3’   ‘~/tmp/scratch/Rtmpqe28CS’ ‘~/tmp/scratch/RtmpqgDice’   ‘~/tmp/scratch/RtmprZMLM1’ ‘~/tmp/scratch/RtmpsAhZEn’   ‘~/tmp/scratch/RtmpsLG5kB’ ‘~/tmp/scratch/RtmpsboinD’   ‘~/tmp/scratch/RtmptE3qu0’ ‘~/tmp/scratch/RtmptQhmt6’   ‘~/tmp/scratch/RtmpuD0TC8’ ‘~/tmp/scratch/RtmpuIqHkD’   ‘~/tmp/scratch/RtmpuevV8U’ ‘~/tmp/scratch/RtmpumSNSF’   ‘~/tmp/scratch/RtmpuxUeIW’ ‘~/tmp/scratch/Rtmpv0HNFW’   ‘~/tmp/scratch/RtmpvJXaCa’ ‘~/tmp/scratch/RtmpvN4BOg’   ‘~/tmp/scratch/RtmpwJuKKM’ ‘~/tmp/scratch/RtmpxA4FSp’   ‘~/tmp/scratch/RtmpxOjfKG’ ‘~/tmp/scratch/RtmpxvZ0Rt’   ‘~/tmp/scratch/Rtmpxw5Jzn’ ‘~/tmp/scratch/RtmpylIe0n’   ‘~/tmp/scratch/RtmpzEdTkY’ ‘~/tmp/scratch/RtmpzHAIR1’   ‘~/tmp/scratch/RtmpzaUBvF’ ‘~/tmp/scratch/RtmpzgYu1V’   ‘~/tmp/scratch/RtmpzhYMKm’ ‘~/tmp/scratch/Rtmpzjk3h9’   ‘~/tmp/scratch/quarto-sessionab2190f9151a6172’   ‘~/tmp/scratch/xvfb-run.349NmD’ ‘~/tmp/scratch/xvfb-run.4Bkinh’   ‘~/tmp/scratch/xvfb-run.5u9daD’ ‘~/tmp/scratch/xvfb-run.6bvGpz’   ‘~/tmp/scratch/xvfb-run.7DydL4’ ‘~/tmp/scratch/xvfb-run.84E9gb’   ‘~/tmp/scratch/xvfb-run.8NdX76’ ‘~/tmp/scratch/xvfb-run.93q3DA’   ‘~/tmp/scratch/xvfb-run.9SH73k’ ‘~/tmp/scratch/xvfb-run.BGgeEu’   ‘~/tmp/scratch/xvfb-run.BTI1Cj’ ‘~/tmp/scratch/xvfb-run.BZJ0Da’   ‘~/tmp/scratch/xvfb-run.Cs39IW’ ‘~/tmp/scratch/xvfb-run.F15suN’   ‘~/tmp/scratch/xvfb-run.H09d7g’ ‘~/tmp/scratch/xvfb-run.HID6zZ’   ‘~/tmp/scratch/xvfb-run.Ip8MH2’ ‘~/tmp/scratch/xvfb-run.JGJe14’   ‘~/tmp/scratch/xvfb-run.JHX2C2’ ‘~/tmp/scratch/xvfb-run.K9560W’   ‘~/tmp/scratch/xvfb-run.KBczVL’ ‘~/tmp/scratch/xvfb-run.KEW7g8’   ‘~/tmp/scratch/xvfb-run.KF8kXb’ ‘~/tmp/scratch/xvfb-run.LCBkvA’   ‘~/tmp/scratch/xvfb-run.M411Ma’ ‘~/tmp/scratch/xvfb-run.MSHiDV’   ‘~/tmp/scratch/xvfb-run.NuiLIR’ ‘~/tmp/scratch/xvfb-run.NxPc5P’   ‘~/tmp/scratch/xvfb-run.PpRXhj’ ‘~/tmp/scratch/xvfb-run.S8I0wL’   ‘~/tmp/scratch/xvfb-run.SOg0Rt’ ‘~/tmp/scratch/xvfb-run.SSkBcA’   ‘~/tmp/scratch/xvfb-run.Tm0uCp’ ‘~/tmp/scratch/xvfb-run.TpavTo’   ‘~/tmp/scratch/xvfb-run.Xh0n4Y’ ‘~/tmp/scratch/xvfb-run.ZuoSFU’   ‘~/tmp/scratch/xvfb-run.aWYjCd’ ‘~/tmp/scratch/xvfb-run.apECiB’   ‘~/tmp/scratch/xvfb-run.cS5sbk’ ‘~/tmp/scratch/xvfb-run.cq3lvt’   ‘~/tmp/scratch/xvfb-run.e1eGpc’ ‘~/tmp/scratch/xvfb-run.eFy5TU’   ‘~/tmp/scratch/xvfb-run.eJ5dMO’ ‘~/tmp/scratch/xvfb-run.eSVp7p’   ‘~/tmp/scratch/xvfb-run.ga0MmF’ ‘~/tmp/scratch/xvfb-run.gufJF6’   ‘~/tmp/scratch/xvfb-run.i3bQdw’ ‘~/tmp/scratch/xvfb-run.ilkCIR’   ‘~/tmp/scratch/xvfb-run.kboVij’ ‘~/tmp/scratch/xvfb-run.kluvWf’   ‘~/tmp/scratch/xvfb-run.ntUwTz’ ‘~/tmp/scratch/xvfb-run.oirTtl’   ‘~/tmp/scratch/xvfb-run.pCVqEB’ ‘~/tmp/scratch/xvfb-run.pJUZkv’   ‘~/tmp/scratch/xvfb-run.qeSzpG’ ‘~/tmp/scratch/xvfb-run.qrABsC’   ‘~/tmp/scratch/xvfb-run.rMSpsP’ ‘~/tmp/scratch/xvfb-run.scSMzl’   ‘~/tmp/scratch/xvfb-run.u7IwkU’ ‘~/tmp/scratch/xvfb-run.uB3MRu’   ‘~/tmp/scratch/xvfb-run.vCKTTW’ ‘~/tmp/scratch/xvfb-run.wAOCsg’   ‘~/tmp/scratch/xvfb-run.yOsvX5’ ‘~/tmp/scratch/xvfb-run.z2qDIR’
• DONE

Status: 2 NOTEs