• using R Under development (unstable) (2025-12-19 r89206)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-15 (Debian 15.2.0-11) 15.2.0     GNU Fortran (Debian 15.2.0-11) 15.2.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8
• checking for file ‘sleepr/DESCRIPTION’ ... OK
• this is package ‘sleepr’ version ‘0.3.1’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/1s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘sleepr’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
• checking loading without being on the library search path ... [0s/1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [3s/5s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking examples ... [1s/1s] ERROR Running examples in ‘sleepr-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: bout_analysis > ### Title: Find "bouts" in categorical time series > ### Aliases: bout_analysis > > ### ** Examples > > # Bout analysis on binary variable: > dt <- toy_dam_data() Error in `[.data.table`(out, , `:=`(activity, abs(c(0, diff(sign(0.5 - :   attempt access index 5/5 in VECTOR_ELT Calls: toy_dam_data -> [ -> [.behavr -> NextMethod -> [.data.table Execution halted
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [7s/6s] ERROR   Running ‘testthat.R’ [7s/6s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > library(testthat)   > library(sleepr)   Loading required package: behavr   Loading required package: data.table      Attaching package: 'data.table'      The following object is masked from 'package:base':          %notin%      >   > test_check("sleepr")   Saving _problems/test-max_velocity_detector-10.R   Saving _problems/test-max_velocity_detector-22.R   Saving _problems/test-prepare_data_for_motion_detector-14.R   Saving _problems/test-sleep_annotation-6.R   Saving _problems/test-sleep_annotation-31.R   Saving _problems/test-virtual_beam_cross_detector-10.R   [ FAIL 6 | WARN 0 | SKIP 1 | PASS 25 ]      ══ Skipped tests (1) ═══════════════════════════════════════════════════════════   • empty test (1): 'test-bout_analysis.R:3:1'      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test-max_velocity_detector.R:10:3'): max_velocity_detector works ────   Error in ``[.data.table`(data, , `:=`(n_points, .N), by = t_w)`: attempt access index 6/6 in VECTOR_ELT   Backtrace:       ▆    1. └─sleepr::max_velocity_detector(data, 10) at test-max_velocity_detector.R:10:3    2. └─sleepr:::prepare_data_for_motion_detector(...)    3. └─sleepr:::curate_sparse_roi_data(d)    4. ├─data[, `:=`(n_points, .N), by = t_w]    5. └─data.table:::`[.data.table`(data, , `:=`(n_points, .N), by = t_w)   ── Error ('test-max_velocity_detector.R:21:3'): max_velocity_detector wans when no interaction and masking ──   Error in ``[.data.table`(data, , `:=`(n_points, .N), by = t_w)`: attempt access index 5/5 in VECTOR_ELT   Backtrace:        ▆     1. ├─testthat::expect_warning(...) at test-max_velocity_detector.R:21:3     2. │ └─testthat:::quasi_capture(...)     3. │ ├─testthat (local) .capture(...)     4. │ │ └─base::withCallingHandlers(...)     5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))     6. └─sleepr::max_velocity_detector(data, 10)     7. └─sleepr:::prepare_data_for_motion_detector(...)     8. └─sleepr:::curate_sparse_roi_data(d)     9. ├─data[, `:=`(n_points, .N), by = t_w]    10. └─data.table:::`[.data.table`(data, , `:=`(n_points, .N), by = t_w)   ── Error ('test-prepare_data_for_motion_detector.R:11:3'): prepare_data_for_motion_detector works ──   Error in ``[.data.table`(data, , `:=`(n_points, .N), by = t_w)`: attempt access index 6/6 in VECTOR_ELT   Backtrace:       ▆    1. └─sleepr:::prepare_data_for_motion_detector(...) at test-prepare_data_for_motion_detector.R:11:3    2. └─sleepr:::curate_sparse_roi_data(d)    3. ├─data[, `:=`(n_points, .N), by = t_w]    4. └─data.table:::`[.data.table`(data, , `:=`(n_points, .N), by = t_w)   ── Error ('test-sleep_annotation.R:6:3'): sleep_annotation works return expected results ──   Error in ``[.data.table`(data, , `:=`(n_points, .N), by = t_w)`: attempt access index 4/4 in VECTOR_ELT   Backtrace:       ▆    1. └─sleepr::sleep_annotation(data, motion_detector_FUN = virtual_beam_cross_detector) at test-sleep_annotation.R:6:3    2. └─sleepr (local) wrapped(data)    3. └─sleepr (local) motion_detector_FUN(d, time_window_length, ...)    4. └─sleepr:::prepare_data_for_motion_detector(...)    5. └─sleepr:::curate_sparse_roi_data(d)    6. ├─data[, `:=`(n_points, .N), by = t_w]    7. └─data.table:::`[.data.table`(data, , `:=`(n_points, .N), by = t_w)   ── Error ('test-sleep_annotation.R:31:3'): sleep_annotation works for single or multiple animals ──   Error in ``[.data.table`(data, , `:=`(n_points, .N), by = t_w)`: attempt access index 4/4 in VECTOR_ELT   Backtrace:       ▆    1. └─sleepr::sleep_annotation(data[id == 1][, -"id", with = F], motion_detector_FUN = virtual_beam_cross_detector) at test-sleep_annotation.R:31:3    2. └─sleepr (local) wrapped(data)    3. └─sleepr (local) motion_detector_FUN(d, time_window_length, ...)    4. └─sleepr:::prepare_data_for_motion_detector(...)    5. └─sleepr:::curate_sparse_roi_data(d)    6. ├─data[, `:=`(n_points, .N), by = t_w]    7. └─data.table:::`[.data.table`(data, , `:=`(n_points, .N), by = t_w)   ── Error ('test-virtual_beam_cross_detector.R:10:3'): virtual_beam_cross_detector works ──   Error in ``[.data.table`(data, , `:=`(n_points, .N), by = t_w)`: attempt access index 4/4 in VECTOR_ELT   Backtrace:       ▆    1. └─sleepr::virtual_beam_cross_detector(data, 10) at test-virtual_beam_cross_detector.R:10:3    2. └─sleepr:::prepare_data_for_motion_detector(...)    3. └─sleepr:::curate_sparse_roi_data(d)    4. ├─data[, `:=`(n_points, .N), by = t_w]    5. └─data.table:::`[.data.table`(data, , `:=`(n_points, .N), by = t_w)      [ FAIL 6 | WARN 0 | SKIP 1 | PASS 25 ]   Error:   ! Test failures.   Execution halted
• checking PDF version of manual ... [3s/5s] OK
• checking HTML version of manual ... [0s/0s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 2 ERRORs