* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’
* installing *source* package ‘skm’ ...
** this is package ‘skm’ version ‘0.1.5.4’
** package ‘skm’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
make[1]: Entering directory '/tmp/RtmpR7qVbf/R.INSTALL2a902e3e9f6478/skm/src'
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c dist_wlatlng.cpp -o dist_wlatlng.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c matrix_minmax.cpp -o matrix_minmax.o
matrix_minmax.cpp: In function ‘arma::uword col_min_idx(const arma::colvec&, const arma::ucolvec&)’:
matrix_minmax.cpp:13:10: warning: ‘eT arma::Mat<eT>::min(arma::uword&) const [with eT = double; arma::uword = unsigned int]’ is deprecated: use .index_min() instead [-Wdeprecated-declarations]
13 | u.min(min_val_idx);
| ~~~~~^~~~~~~~~~~~~
In file included from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo:201,
from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:32,
from matrix_minmax.h:5,
from matrix_minmax.cpp:1:
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/Mat_bones.hpp:544:56: note: declared here
544 | [[deprecated("use .index_min() instead")]] inline eT min(uword& index_of_min_val) const;
| ^~~
matrix_minmax.cpp:17:16: warning: ‘elem_type arma::Base<elem_type, derived>::min(arma::uword&) const [with elem_type = double; derived = arma::subview_elem1<double, arma::Mat<unsigned int> >; arma::uword = unsigned int]’ is deprecated: use .index_min() instead [-Wdeprecated-declarations]
17 | u(wlmt).min(min_val_idx); min_val_idx = wlmt(min_val_idx);
| ~~~~~~~~~~~^~~~~~~~~~~~~
In file included from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo:675:
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/Base_meat.hpp:195:1: note: declared here
195 | Base<elem_type,derived>::min(uword& index_of_min_val) const
| ^~~~~~~~~~~~~~~~~~~~~~~
matrix_minmax.cpp: In function ‘arma::uword col_max_idx(const arma::colvec&, const arma::ucolvec&)’:
matrix_minmax.cpp:33:10: warning: ‘eT arma::Mat<eT>::max(arma::uword&) const [with eT = double; arma::uword = unsigned int]’ is deprecated: use .index_max() instead [-Wdeprecated-declarations]
33 | u.max(max_val_idx);
| ~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/Mat_bones.hpp:545:56: note: declared here
545 | [[deprecated("use .index_max() instead")]] inline eT max(uword& index_of_max_val) const;
| ^~~
matrix_minmax.cpp:37:16: warning: ‘elem_type arma::Base<elem_type, derived>::max(arma::uword&) const [with elem_type = double; derived = arma::subview_elem1<double, arma::Mat<unsigned int> >; arma::uword = unsigned int]’ is deprecated: use .index_max() instead [-Wdeprecated-declarations]
37 | u(wlmt).max(max_val_idx); max_val_idx = wlmt(max_val_idx);
| ~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/Base_meat.hpp:207:1: note: declared here
207 | Base<elem_type,derived>::max(uword& index_of_max_val) const
| ^~~~~~~~~~~~~~~~~~~~~~~
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c skm.cpp -o skm.o
skm.cpp: In function ‘Rcpp::List skm_mlp_cpp(const arma::mat&, arma::uword, const arma::uvec&, arma::uword, arma::uword)’:
skm.cpp:396:17: warning: ‘eT arma::Mat<eT>::min(arma::uword&) const [with eT = double; arma::uword = unsigned int]’ is deprecated: use .index_min() instead [-Wdeprecated-declarations]
396 | o = o_list.min(optim_at);
| ~~~~~~~~~~^~~~~~~~~~
In file included from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo:201,
from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:32,
from skm.h:5,
from skm.cpp:1:
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/Mat_bones.hpp:544:56: note: declared here
544 | [[deprecated("use .index_min() instead")]] inline eT min(uword& index_of_min_val) const;
| ^~~
skm.cpp: In function ‘Rcpp::List skm_mls_cpp(const arma::mat&, arma::uword, arma::uvec, const arma::uvec&, arma::uword, arma::uword)’:
skm.cpp:483:17: warning: ‘eT arma::Mat<eT>::min(arma::uword&) const [with eT = double; arma::uword = unsigned int]’ is deprecated: use .index_min() instead [-Wdeprecated-declarations]
483 | o = o_list.min(optim_at);
| ~~~~~~~~~~^~~~~~~~~~
In file included from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo:692:
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/Mat_meat.hpp:7829:1: note: declared here
7829 | Mat<eT>::min(uword& index_of_min_val) const
| ^~~~~~~
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c skm_gdp.cpp -o skm_gdp.o
skm_gdp.cpp: In function ‘arma::uvec skm_gdp_cpp(arma::mat, arma::uword)’:
skm_gdp.cpp:57:35: warning: ‘eT arma::Mat<eT>::min(arma::uword&) const [with eT = double; arma::uword = unsigned int]’ is deprecated: use .index_min() instead [-Wdeprecated-declarations]
57 | rs = arma::sum(x, 1); rs.min(id);
| ~~~~~~^~~~
In file included from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo:201,
from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:32,
from skm_gdp.h:5,
from skm_gdp.cpp:1:
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/Mat_bones.hpp:544:56: note: declared here
544 | [[deprecated("use .index_min() instead")]] inline eT min(uword& index_of_min_val) const;
| ^~~
g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -Wl,-O1 -o skm.so RcppExports.o dist_wlatlng.o matrix_minmax.o skm.o skm_gdp.o -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpR7qVbf/R.INSTALL2a902e3e9f6478/skm/src'
make[1]: Entering directory '/tmp/RtmpR7qVbf/R.INSTALL2a902e3e9f6478/skm/src'
make[1]: Leaving directory '/tmp/RtmpR7qVbf/R.INSTALL2a902e3e9f6478/skm/src'
installing to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/00LOCK-skm/00new/skm/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (skm)