• using R Under development (unstable) (2026-07-30 r90327)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-07-31 17:52:16 UTC
• checking for file ‘simplePHENOTYPES/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘simplePHENOTYPES’ version ‘1.3.0’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [2s/2s] NOTE Maintainer: ‘Samuel Fernandes <samuelf@illinois.edu>’ Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead.
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘simplePHENOTYPES’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/1s] OK
• checking loading without being on the library search path ... [0s/0s] OK
• checking whether startup messages can be suppressed ... [0s/0s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [17s/22s] OK
• checking Rd files ... [0s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/1s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [1s/1s] OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [1s/2s] OK
• checking PDF version of manual ... [4s/6s] OK
• checking HTML version of manual ... [1s/1s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp03Zs9I’ ‘~/tmp/scratch/Rtmp15PmrX’   ‘~/tmp/scratch/Rtmp1Dz8k5’ ‘~/tmp/scratch/Rtmp2n5f2o’   ‘~/tmp/scratch/Rtmp4GRDwn’ ‘~/tmp/scratch/Rtmp4cuJMN’   ‘~/tmp/scratch/Rtmp58CyZO’ ‘~/tmp/scratch/Rtmp5LY64i’   ‘~/tmp/scratch/Rtmp66EMYr’ ‘~/tmp/scratch/Rtmp6xyzp2’   ‘~/tmp/scratch/Rtmp70e9VS’ ‘~/tmp/scratch/Rtmp7YFsAN’   ‘~/tmp/scratch/Rtmp7rgOnP’ ‘~/tmp/scratch/Rtmp83v27Q’   ‘~/tmp/scratch/Rtmp8xksaw’ ‘~/tmp/scratch/RtmpAGGJGp’   ‘~/tmp/scratch/RtmpB624sE’ ‘~/tmp/scratch/RtmpCCDw0z’   ‘~/tmp/scratch/RtmpCWMrZR’ ‘~/tmp/scratch/RtmpCdQMWP’   ‘~/tmp/scratch/RtmpD3O74S’ ‘~/tmp/scratch/RtmpDCOi6y’   ‘~/tmp/scratch/RtmpECF7GU’ ‘~/tmp/scratch/RtmpEb0lj6’   ‘~/tmp/scratch/RtmpEl5KPV’ ‘~/tmp/scratch/RtmpEmPVmV’   ‘~/tmp/scratch/RtmpFnTV2b’ ‘~/tmp/scratch/RtmpFuDseE’   ‘~/tmp/scratch/RtmpFzLGHT’ ‘~/tmp/scratch/RtmpG6qHRf’   ‘~/tmp/scratch/RtmpGQ9P1a’ ‘~/tmp/scratch/RtmpGbvIlB’   ‘~/tmp/scratch/RtmpGuO9d6’ ‘~/tmp/scratch/RtmpH8lsri’   ‘~/tmp/scratch/RtmpHGerfL’ ‘~/tmp/scratch/RtmpHlvmFr’   ‘~/tmp/scratch/RtmpINYNlH’ ‘~/tmp/scratch/RtmpIQ333v’   ‘~/tmp/scratch/RtmpIzlJ09’ ‘~/tmp/scratch/RtmpJHeZ60’   ‘~/tmp/scratch/RtmpJRB2xb’ ‘~/tmp/scratch/RtmpJS3GPs’   ‘~/tmp/scratch/RtmpLS6jZC’ ‘~/tmp/scratch/RtmpLU5uU7’   ‘~/tmp/scratch/RtmpMILJSk’ ‘~/tmp/scratch/RtmpMSqFuM’   ‘~/tmp/scratch/RtmpN32ebO’ ‘~/tmp/scratch/RtmpNGRZ5r’   ‘~/tmp/scratch/RtmpNPq3pJ’ ‘~/tmp/scratch/RtmpPKOWNr’   ‘~/tmp/scratch/RtmpPhAk8W’ ‘~/tmp/scratch/RtmpPtlCeZ’   ‘~/tmp/scratch/RtmpQAJ04D’ ‘~/tmp/scratch/RtmpQmHxoD’   ‘~/tmp/scratch/RtmpRB2y0r’ ‘~/tmp/scratch/RtmpRwcIIi’   ‘~/tmp/scratch/RtmpRy4i83’ ‘~/tmp/scratch/RtmpSuLkjE’   ‘~/tmp/scratch/RtmpUPZfZc’ ‘~/tmp/scratch/RtmpUQFWak’   ‘~/tmp/scratch/RtmpUmMs27’ ‘~/tmp/scratch/RtmpW0iE0z’   ‘~/tmp/scratch/RtmpWbTJmn’ ‘~/tmp/scratch/RtmpWwchbt’   ‘~/tmp/scratch/RtmpXdSG7w’ ‘~/tmp/scratch/RtmpYZu8gm’   ‘~/tmp/scratch/RtmpYnCrOU’ ‘~/tmp/scratch/RtmpaOianT’   ‘~/tmp/scratch/RtmpaoRgfL’ ‘~/tmp/scratch/RtmpbKdFV2’   ‘~/tmp/scratch/RtmpbV9ZhB’ ‘~/tmp/scratch/RtmpbgzH8V’   ‘~/tmp/scratch/Rtmpbuxl3D’ ‘~/tmp/scratch/Rtmpc3rzZX’   ‘~/tmp/scratch/RtmpcGNOmu’ ‘~/tmp/scratch/RtmpcIcNuv’   ‘~/tmp/scratch/RtmpcqwuWm’ ‘~/tmp/scratch/Rtmpd6Thuf’   ‘~/tmp/scratch/RtmpdB5O7W’ ‘~/tmp/scratch/RtmpdOig4w’   ‘~/tmp/scratch/RtmpdzdxjN’ ‘~/tmp/scratch/RtmpeTvzfK’   ‘~/tmp/scratch/Rtmpeq1lws’ ‘~/tmp/scratch/Rtmpeu067L’   ‘~/tmp/scratch/RtmpexRbXd’ ‘~/tmp/scratch/RtmpfeIh0l’   ‘~/tmp/scratch/RtmpfnFsyn’ ‘~/tmp/scratch/RtmpggPBFy’   ‘~/tmp/scratch/RtmpgnPvSP’ ‘~/tmp/scratch/Rtmph5NA0E’   ‘~/tmp/scratch/Rtmpi3iNGO’ ‘~/tmp/scratch/Rtmpi9gmwt’   ‘~/tmp/scratch/RtmpiQ0Z9x’ ‘~/tmp/scratch/RtmpiVXLyC’   ‘~/tmp/scratch/RtmpiXVT7u’ ‘~/tmp/scratch/RtmpipguA7’   ‘~/tmp/scratch/RtmpjEjTFP’ ‘~/tmp/scratch/Rtmpjo3DLu’   ‘~/tmp/scratch/Rtmpk01LO2’ ‘~/tmp/scratch/Rtmpk8ADTh’   ‘~/tmp/scratch/RtmpkMqM3H’ ‘~/tmp/scratch/RtmplSL1Eq’   ‘~/tmp/scratch/RtmplZPkwx’ ‘~/tmp/scratch/RtmplvwCtK’   ‘~/tmp/scratch/Rtmpm9np1L’ ‘~/tmp/scratch/RtmpmrCArh’   ‘~/tmp/scratch/Rtmpn0QkfP’ ‘~/tmp/scratch/RtmpnDdMlt’   ‘~/tmp/scratch/RtmpnS6dsM’ ‘~/tmp/scratch/RtmpoJAEfA’   ‘~/tmp/scratch/Rtmpohymm3’ ‘~/tmp/scratch/RtmpomW0dL’   ‘~/tmp/scratch/RtmpoxgnzV’ ‘~/tmp/scratch/RtmppROL2O’   ‘~/tmp/scratch/Rtmpqfa38t’ ‘~/tmp/scratch/RtmpqlhJJZ’   ‘~/tmp/scratch/RtmprNKewL’ ‘~/tmp/scratch/Rtmps4SyR8’   ‘~/tmp/scratch/RtmpsCtFbG’ ‘~/tmp/scratch/RtmpszTjRi’   ‘~/tmp/scratch/Rtmpt4V4qV’ ‘~/tmp/scratch/RtmptBPVmK’   ‘~/tmp/scratch/RtmptXtJMq’ ‘~/tmp/scratch/RtmpteLIw8’   ‘~/tmp/scratch/RtmptrC6ZP’ ‘~/tmp/scratch/RtmpuYZ0EA’   ‘~/tmp/scratch/Rtmpucx0t2’ ‘~/tmp/scratch/RtmpugSyOQ’   ‘~/tmp/scratch/RtmpvECGQd’ ‘~/tmp/scratch/RtmpxGY786’   ‘~/tmp/scratch/RtmpxH9qqp’ ‘~/tmp/scratch/RtmpxNwvmZ’   ‘~/tmp/scratch/RtmpyFqZzi’ ‘~/tmp/scratch/RtmpyOZZdB’   ‘~/tmp/scratch/RtmpyPODch’ ‘~/tmp/scratch/RtmpzBO28W’   ‘~/tmp/scratch/RtmpzybsFG’ ‘~/tmp/scratch/xvfb-run.3ygEfj’   ‘~/tmp/scratch/xvfb-run.4CFelc’ ‘~/tmp/scratch/xvfb-run.7fONqW’   ‘~/tmp/scratch/xvfb-run.8kRWNe’ ‘~/tmp/scratch/xvfb-run.9idYCs’   ‘~/tmp/scratch/xvfb-run.AXPajq’ ‘~/tmp/scratch/xvfb-run.CQyMYW’   ‘~/tmp/scratch/xvfb-run.CUyfWx’ ‘~/tmp/scratch/xvfb-run.E1HIKh’   ‘~/tmp/scratch/xvfb-run.FgRBMm’ ‘~/tmp/scratch/xvfb-run.FvwRth’   ‘~/tmp/scratch/xvfb-run.G8JVVw’ ‘~/tmp/scratch/xvfb-run.GXwaVh’   ‘~/tmp/scratch/xvfb-run.J07plh’ ‘~/tmp/scratch/xvfb-run.JZN8sY’   ‘~/tmp/scratch/xvfb-run.LEyxdA’ ‘~/tmp/scratch/xvfb-run.LqvG0r’   ‘~/tmp/scratch/xvfb-run.MnXVmo’ ‘~/tmp/scratch/xvfb-run.NOJOXC’   ‘~/tmp/scratch/xvfb-run.RrA0gt’ ‘~/tmp/scratch/xvfb-run.RzOrAM’   ‘~/tmp/scratch/xvfb-run.Tmws4d’ ‘~/tmp/scratch/xvfb-run.X4KgdU’   ‘~/tmp/scratch/xvfb-run.Y1I7ka’ ‘~/tmp/scratch/xvfb-run.YTj8ZC’   ‘~/tmp/scratch/xvfb-run.ZzQi74’ ‘~/tmp/scratch/xvfb-run.a0w2XK’   ‘~/tmp/scratch/xvfb-run.a1S4tl’ ‘~/tmp/scratch/xvfb-run.a5An0f’   ‘~/tmp/scratch/xvfb-run.cO3wnn’ ‘~/tmp/scratch/xvfb-run.cvEZZM’   ‘~/tmp/scratch/xvfb-run.dRacYy’ ‘~/tmp/scratch/xvfb-run.iGpq58’   ‘~/tmp/scratch/xvfb-run.jdd1yX’ ‘~/tmp/scratch/xvfb-run.mmze9l’   ‘~/tmp/scratch/xvfb-run.nsljpB’ ‘~/tmp/scratch/xvfb-run.oBSpWR’   ‘~/tmp/scratch/xvfb-run.ohoig3’ ‘~/tmp/scratch/xvfb-run.oyYHbk’   ‘~/tmp/scratch/xvfb-run.rnUWCV’ ‘~/tmp/scratch/xvfb-run.uDJeJY’   ‘~/tmp/scratch/xvfb-run.wEULW0’ ‘~/tmp/scratch/xvfb-run.xzqHjD’   ‘~/tmp/scratch/xvfb-run.yi903S’ ‘~/tmp/scratch/xvfb-run.ynRwrQ’   ‘~/tmp/scratch/xvfb-run.zjD147’ ‘~/tmp/scratch/xvfb-run.zjNyq9’   ‘/dev/shm/sm_segment.gimli1.1001.7ec70000.0’   ‘~/.cache/pocl/uncached/tempfile_Zzkel2’
• DONE

Status: 2 NOTEs