• using R Under development (unstable) (2026-07-30 r90327)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-07-31 17:51:03 UTC
• checking for file ‘sigminer/DESCRIPTION’ ... OK
• this is package ‘sigminer’ version ‘2.3.1’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [3s/4s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘sigminer’ can be installed ... OK See the install log for details.
• used C++ compiler: ‘g++-16 (Debian 16.1.0-3) 16.1.0’
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... NOTE   Missing dependency on R >= 4.1.0 because package code uses the pipe   |> or function shorthand \(...) syntax added in R 4.1.0.   File(s) using such syntax:     ‘show_group_enrichment.R’
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [3s/3s] OK
• checking whether the package can be loaded with stated dependencies ... [3s/3s] OK
• checking whether the package can be unloaded cleanly ... [2s/3s] OK
• checking whether the namespace can be loaded with stated dependencies ... [2s/3s] OK
• checking whether the namespace can be unloaded cleanly ... [3s/4s] OK
• checking loading without being on the library search path ... [3s/4s] OK
• checking whether startup messages can be suppressed ... [3s/4s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [33s/44s] OK
• checking Rd files ... [1s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/1s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [20s/27s] OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [22s/29s] OK
• checking PDF version of manual ... [7s/9s] OK
• checking HTML version of manual ... [3s/4s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0Wu6OI’ ‘~/tmp/scratch/Rtmp0gOKNK’   ‘~/tmp/scratch/Rtmp0lQTSZ’ ‘~/tmp/scratch/Rtmp0zNHPe’   ‘~/tmp/scratch/Rtmp18PWOX’ ‘~/tmp/scratch/Rtmp1JfoyA’   ‘~/tmp/scratch/Rtmp1c1BPI’ ‘~/tmp/scratch/Rtmp2HwjvU’   ‘~/tmp/scratch/Rtmp2eut95’ ‘~/tmp/scratch/Rtmp2lJy1L’   ‘~/tmp/scratch/Rtmp3arOyk’ ‘~/tmp/scratch/Rtmp3se2OJ’   ‘~/tmp/scratch/Rtmp4094VB’ ‘~/tmp/scratch/Rtmp4GRDwn’   ‘~/tmp/scratch/Rtmp4juCTk’ ‘~/tmp/scratch/Rtmp4zmuga’   ‘~/tmp/scratch/Rtmp5LY64i’ ‘~/tmp/scratch/Rtmp66EMYr’   ‘~/tmp/scratch/Rtmp6nXofa’ ‘~/tmp/scratch/Rtmp6v1LKE’   ‘~/tmp/scratch/Rtmp7DNxn2’ ‘~/tmp/scratch/Rtmp7NZj1U’   ‘~/tmp/scratch/Rtmp8CipOj’ ‘~/tmp/scratch/Rtmp8IaOao’   ‘~/tmp/scratch/Rtmp8aQ3JK’ ‘~/tmp/scratch/Rtmp8vr4LS’   ‘~/tmp/scratch/Rtmp8xayvb’ ‘~/tmp/scratch/Rtmp8xksaw’   ‘~/tmp/scratch/Rtmp96eQvH’ ‘~/tmp/scratch/Rtmp9kSo8l’   ‘~/tmp/scratch/Rtmp9w9JgW’ ‘~/tmp/scratch/RtmpAFtNGV’   ‘~/tmp/scratch/RtmpAGGJGp’ ‘~/tmp/scratch/RtmpAPVMSv’   ‘~/tmp/scratch/RtmpAh7uKC’ ‘~/tmp/scratch/RtmpAozMrD’   ‘~/tmp/scratch/RtmpBN11sy’ ‘~/tmp/scratch/RtmpBWZq0b’   ‘~/tmp/scratch/RtmpBkFrs6’ ‘~/tmp/scratch/RtmpBrtJNz’   ‘~/tmp/scratch/RtmpC4630k’ ‘~/tmp/scratch/RtmpCCDw0z’   ‘~/tmp/scratch/RtmpCTOB6W’ ‘~/tmp/scratch/RtmpCnKllA’   ‘~/tmp/scratch/RtmpCxTXGN’ ‘~/tmp/scratch/RtmpDH3MSx’   ‘~/tmp/scratch/RtmpDIBCoC’ ‘~/tmp/scratch/RtmpDINqhv’   ‘~/tmp/scratch/RtmpDYsX44’ ‘~/tmp/scratch/RtmpEd0eNk’   ‘~/tmp/scratch/RtmpEl5KPV’ ‘~/tmp/scratch/RtmpGziVFG’   ‘~/tmp/scratch/RtmpHFm5lQ’ ‘~/tmp/scratch/RtmpHLmBWB’   ‘~/tmp/scratch/RtmpHWsvgG’ ‘~/tmp/scratch/RtmpIfsvOA’   ‘~/tmp/scratch/RtmpJS3GPs’ ‘~/tmp/scratch/RtmpJTDjsM’   ‘~/tmp/scratch/RtmpJf0Vf8’ ‘~/tmp/scratch/RtmpJp40vE’   ‘~/tmp/scratch/RtmpKLonZS’ ‘~/tmp/scratch/RtmpLU5uU7’   ‘~/tmp/scratch/RtmpLxJGrg’ ‘~/tmp/scratch/RtmpM9VUMW’   ‘~/tmp/scratch/RtmpNQWZl2’ ‘~/tmp/scratch/RtmpNa005I’   ‘~/tmp/scratch/RtmpNlmG3M’ ‘~/tmp/scratch/RtmpOJjT2b’   ‘~/tmp/scratch/RtmpOV8gNz’ ‘~/tmp/scratch/RtmpOmxWNF’   ‘~/tmp/scratch/RtmpPDSqP3’ ‘~/tmp/scratch/RtmpPrC1Af’   ‘~/tmp/scratch/RtmpQFWFDf’ ‘~/tmp/scratch/RtmpRaR7D4’   ‘~/tmp/scratch/RtmpRgtk2P’ ‘~/tmp/scratch/RtmpS03ZKs’   ‘~/tmp/scratch/RtmpTFFd1t’ ‘~/tmp/scratch/RtmpTNtwyk’   ‘~/tmp/scratch/RtmpU4yLUw’ ‘~/tmp/scratch/RtmpULtIkW’   ‘~/tmp/scratch/RtmpUmMs27’ ‘~/tmp/scratch/RtmpUxO8YZ’   ‘~/tmp/scratch/RtmpUxrtM7’ ‘~/tmp/scratch/RtmpVDdm5z’   ‘~/tmp/scratch/RtmpVRzanN’ ‘~/tmp/scratch/RtmpW0yR3w’   ‘~/tmp/scratch/RtmpW2s6Gi’ ‘~/tmp/scratch/RtmpWZO8R7’   ‘~/tmp/scratch/RtmpWZRWuK’ ‘~/tmp/scratch/RtmpWvn7ux’   ‘~/tmp/scratch/RtmpX4BPUt’ ‘~/tmp/scratch/RtmpXAfVDr’   ‘~/tmp/scratch/RtmpXflIwR’ ‘~/tmp/scratch/RtmpXqcu6H’   ‘~/tmp/scratch/RtmpYKyS9e’ ‘~/tmp/scratch/RtmpYSZBsS’   ‘~/tmp/scratch/RtmpYmSOUr’ ‘~/tmp/scratch/RtmpYo9P2G’   ‘~/tmp/scratch/RtmpYsWojh’ ‘~/tmp/scratch/RtmpYtNTLa’   ‘~/tmp/scratch/RtmpYx62RO’ ‘~/tmp/scratch/RtmpZjDQbq’   ‘~/tmp/scratch/RtmpZzhUGp’ ‘~/tmp/scratch/Rtmpa2Asit’   ‘~/tmp/scratch/RtmpaFROdK’ ‘~/tmp/scratch/RtmpaOianT’   ‘~/tmp/scratch/RtmpaoRgfL’ ‘~/tmp/scratch/RtmpasTFNO’   ‘~/tmp/scratch/Rtmpay6Qbv’ ‘~/tmp/scratch/Rtmpb5LAmC’   ‘~/tmp/scratch/RtmpbB7cPS’ ‘~/tmp/scratch/RtmpbV9ZhB’   ‘~/tmp/scratch/RtmpbfIv63’ ‘~/tmp/scratch/RtmpbrU7S7’   ‘~/tmp/scratch/Rtmpc0xZTn’ ‘~/tmp/scratch/RtmpcBjr9W’   ‘~/tmp/scratch/RtmpcTtyYu’ ‘~/tmp/scratch/RtmpcqwuWm’   ‘~/tmp/scratch/Rtmpdc0HYQ’ ‘~/tmp/scratch/Rtmpdh57OC’   ‘~/tmp/scratch/RtmpdljvON’ ‘~/tmp/scratch/Rtmpe5I0tb’   ‘~/tmp/scratch/Rtmpeq1lws’ ‘~/tmp/scratch/RtmpeqwKTG’   ‘~/tmp/scratch/RtmpexMQg2’ ‘~/tmp/scratch/RtmpfBu7dr’   ‘~/tmp/scratch/RtmpfeIh0l’ ‘~/tmp/scratch/Rtmpg9LB53’   ‘~/tmp/scratch/Rtmpgg17mM’ ‘~/tmp/scratch/RtmphhRT11’   ‘~/tmp/scratch/Rtmpik53vm’ ‘~/tmp/scratch/Rtmpj7NMWW’   ‘~/tmp/scratch/RtmpkONwjg’ ‘~/tmp/scratch/RtmpkmTlSz’   ‘~/tmp/scratch/Rtmpky6DEd’ ‘~/tmp/scratch/RtmplSL1Eq’   ‘~/tmp/scratch/RtmpliUJtp’ ‘~/tmp/scratch/RtmpmqMOY3’   ‘~/tmp/scratch/RtmpmwfXk5’ ‘~/tmp/scratch/RtmpnN6YvR’   ‘~/tmp/scratch/RtmpnpJoCB’ ‘~/tmp/scratch/RtmpnyJqvz’   ‘~/tmp/scratch/Rtmpo2nvoP’ ‘~/tmp/scratch/RtmpoRbjVb’   ‘~/tmp/scratch/RtmpomW0dL’ ‘~/tmp/scratch/RtmposZ4sS’   ‘~/tmp/scratch/RtmpovpcJS’ ‘~/tmp/scratch/RtmppSvwGf’   ‘~/tmp/scratch/RtmppfN2jf’ ‘~/tmp/scratch/Rtmpq9oeFt’   ‘~/tmp/scratch/RtmprBjraz’ ‘~/tmp/scratch/RtmprJTMAP’   ‘~/tmp/scratch/RtmprT4P2T’ ‘~/tmp/scratch/RtmprgHGFD’   ‘~/tmp/scratch/RtmpsOosx1’ ‘~/tmp/scratch/Rtmpsy7eDV’   ‘~/tmp/scratch/Rtmpt9EC51’ ‘~/tmp/scratch/RtmptCNaMt’   ‘~/tmp/scratch/RtmptV6xzl’ ‘~/tmp/scratch/RtmpteLIw8’   ‘~/tmp/scratch/Rtmpu4AKnq’ ‘~/tmp/scratch/Rtmpucx0t2’   ‘~/tmp/scratch/RtmpugSyOQ’ ‘~/tmp/scratch/RtmpvXojXw’   ‘~/tmp/scratch/RtmpvgIoQ3’ ‘~/tmp/scratch/Rtmpw3gWx0’   ‘~/tmp/scratch/RtmpwKbRMR’ ‘~/tmp/scratch/RtmpwUK74A’   ‘~/tmp/scratch/Rtmpx1bGOI’ ‘~/tmp/scratch/RtmpxFNUfS’   ‘~/tmp/scratch/Rtmpy1hUHJ’ ‘~/tmp/scratch/Rtmpy3ZIl6’   ‘~/tmp/scratch/RtmpyMm7cD’ ‘~/tmp/scratch/RtmpyXzVkS’   ‘~/tmp/scratch/RtmpyuD7j2’ ‘~/tmp/scratch/xvfb-run.0Ho7MD’   ‘~/tmp/scratch/xvfb-run.13cETf’ ‘~/tmp/scratch/xvfb-run.1FlpJj’   ‘~/tmp/scratch/xvfb-run.1KWXE7’ ‘~/tmp/scratch/xvfb-run.2Az1Sb’   ‘~/tmp/scratch/xvfb-run.2x8zDa’ ‘~/tmp/scratch/xvfb-run.33ITvG’   ‘~/tmp/scratch/xvfb-run.7MDDGq’ ‘~/tmp/scratch/xvfb-run.7iYwYt’   ‘~/tmp/scratch/xvfb-run.9idYCs’ ‘~/tmp/scratch/xvfb-run.A0cXkN’   ‘~/tmp/scratch/xvfb-run.CUyfWx’ ‘~/tmp/scratch/xvfb-run.EVdHos’   ‘~/tmp/scratch/xvfb-run.FTtcdc’ ‘~/tmp/scratch/xvfb-run.Fucayy’   ‘~/tmp/scratch/xvfb-run.HyLjOh’ ‘~/tmp/scratch/xvfb-run.IE4yIG’   ‘~/tmp/scratch/xvfb-run.J07plh’ ‘~/tmp/scratch/xvfb-run.JdD01A’   ‘~/tmp/scratch/xvfb-run.LEyxdA’ ‘~/tmp/scratch/xvfb-run.LxJ21W’   ‘~/tmp/scratch/xvfb-run.MFLowv’ ‘~/tmp/scratch/xvfb-run.NDA7hg’   ‘~/tmp/scratch/xvfb-run.OCBgis’ ‘~/tmp/scratch/xvfb-run.OLy1Yh’   ‘~/tmp/scratch/xvfb-run.P6vk8r’ ‘~/tmp/scratch/xvfb-run.PX1lsA’   ‘~/tmp/scratch/xvfb-run.PqR4GF’ ‘~/tmp/scratch/xvfb-run.Q8aMeZ’   ‘~/tmp/scratch/xvfb-run.QU7OXq’ ‘~/tmp/scratch/xvfb-run.QcxiHO’   ‘~/tmp/scratch/xvfb-run.RjLuJ7’ ‘~/tmp/scratch/xvfb-run.T1CxYS’   ‘~/tmp/scratch/xvfb-run.TOROCH’ ‘~/tmp/scratch/xvfb-run.TsyeT6’   ‘~/tmp/scratch/xvfb-run.TweD9d’ ‘~/tmp/scratch/xvfb-run.U5gJQV’   ‘~/tmp/scratch/xvfb-run.UJE7ZH’ ‘~/tmp/scratch/xvfb-run.Usm4LW’   ‘~/tmp/scratch/xvfb-run.VMGumd’ ‘~/tmp/scratch/xvfb-run.WBC21g’   ‘~/tmp/scratch/xvfb-run.XvjiOx’ ‘~/tmp/scratch/xvfb-run.Y1I7ka’   ‘~/tmp/scratch/xvfb-run.YSVHQw’ ‘~/tmp/scratch/xvfb-run.YTj8ZC’   ‘~/tmp/scratch/xvfb-run.Z2Pk70’ ‘~/tmp/scratch/xvfb-run.Z9rZPg’   ‘~/tmp/scratch/xvfb-run.ZT5KcF’ ‘~/tmp/scratch/xvfb-run.ZzQi74’   ‘~/tmp/scratch/xvfb-run.bD3U7f’ ‘~/tmp/scratch/xvfb-run.c51tqU’   ‘~/tmp/scratch/xvfb-run.cD3fe5’ ‘~/tmp/scratch/xvfb-run.cobWCI’   ‘~/tmp/scratch/xvfb-run.cvEZZM’ ‘~/tmp/scratch/xvfb-run.elA5fG’   ‘~/tmp/scratch/xvfb-run.fBBxq9’ ‘~/tmp/scratch/xvfb-run.ilV0AM’   ‘~/tmp/scratch/xvfb-run.kX1mpi’ ‘~/tmp/scratch/xvfb-run.kZAJqL’   ‘~/tmp/scratch/xvfb-run.lG31EZ’ ‘~/tmp/scratch/xvfb-run.lYL5Dp’   ‘~/tmp/scratch/xvfb-run.m3DxjW’ ‘~/tmp/scratch/xvfb-run.mB2DCE’   ‘~/tmp/scratch/xvfb-run.nR6NWW’ ‘~/tmp/scratch/xvfb-run.nsljpB’   ‘~/tmp/scratch/xvfb-run.oBSpWR’ ‘~/tmp/scratch/xvfb-run.rnUWCV’   ‘~/tmp/scratch/xvfb-run.tKbXFw’ ‘~/tmp/scratch/xvfb-run.wJGVrU’   ‘~/tmp/scratch/xvfb-run.wuZumw’ ‘~/tmp/scratch/xvfb-run.xYujAx’   ‘~/tmp/scratch/xvfb-run.xo3tbZ’ ‘~/tmp/scratch/xvfb-run.yi903S’   ‘~/tmp/scratch/xvfb-run.yopFD7’ ‘~/tmp/scratch/xvfb-run.ywwefK’   ‘~/tmp/scratch/xvfb-run.z6ssbf’ ‘~/tmp/scratch/xvfb-run.zjNyq9’   ‘/dev/shm/sm_segment.gimli1.1001.7ec70000.0’   ‘~/.cache/pocl/uncached/tempfile_Zzkel2’
• DONE

Status: 2 NOTEs