* using log directory ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/shelltrace.Rcheck’ * using R Under development (unstable) (2025-07-14 r88410) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc-14 (Debian 14.2.0-19) 14.2.0 GNU Fortran (Debian 14.2.0-19) 14.2.0 * running under: Debian GNU/Linux 13 (trixie) * using session charset: UTF-8 * checking for file ‘shelltrace/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘shelltrace’ version ‘3.5.1’ * checking CRAN incoming feasibility ... [1s/1s] NOTE Maintainer: ‘Niels J. de Winter ’ No Authors@R field in DESCRIPTION. Please add one, modifying Authors@R: person(given = c("Niels", "J."), family = "de Winter", role = c("aut", "cre"), email = "niels.de.winter@vub.be") as necessary. Package CITATION file contains call(s) to old-style personList() or as.personList(). Please use c() on person objects instead. Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead. Found the following URLs which should use \doi (with the DOI name only): File ‘BMP.Rd’: https://doi.org/10.5194/gmd-2017-137-supplement File ‘IncG.Rd’: https://doi.org/10.5194/gmd-2017-137-supplement File ‘M_el_mat.Rd’: https://doi.org/10.5194/gmd-2017-137-supplement File ‘M_el_mat_c.Rd’: https://doi.org/10.5194/gmd-2017-137-supplement File ‘O1_input.Rd’: https://doi.org/10.5194/gmd-2017-137-supplement File ‘O1_phase.Rd’: https://doi.org/10.5194/gmd-2017-137-supplement File ‘Oyster_Convert_cross_section.Rd’: https://doi.org/10.5194/gmd-2017-137 https://doi.org/10.5194/gmd-2017-137-supplement File ‘Oyster_Export.Rd’: https://doi.org/10.5194/gmd-2017-137 https://doi.org/10.5194/gmd-2017-137-supplement File ‘Oyster_Mass_gain.Rd’: https://doi.org/10.5194/gmd-2017-137 https://doi.org/10.5194/gmd-2017-137-supplement File ‘Oyster_Shell_height.Rd’: https://doi.org/10.5194/gmd-2017-137 https://doi.org/10.5194/gmd-2017-137-supplement File ‘Oyster_Shell_thickness.Rd’: https://doi.org/10.5194/gmd-2017-137 https://doi.org/10.5194/gmd-2017-137-supplement File ‘Oyster_Volumes.Rd’: https://doi.org/10.5194/gmd-2017-137 https://doi.org/10.5194/gmd-2017-137-supplement File ‘Oyster_Z_matrices.Rd’: https://doi.org/10.5194/gmd-2017-137 https://doi.org/10.5194/gmd-2017-137-supplement File ‘Oyster_accumulation.Rd’: https://doi.org/10.5194/gmd-2017-137 https://doi.org/10.5194/gmd-2017-137-supplement File ‘Oyster_combined_run.Rd’: https://doi.org/10.5194/gmd-2017-137 https://doi.org/10.5194/gmd-2017-137-supplement File ‘Oyster_el_time.Rd’: https://doi.org/10.5194/gmd-2017-137 https://doi.org/10.5194/gmd-2017-137-supplement File ‘Oyster_ellipse_parameters.Rd’: https://doi.org/10.5194/gmd-2017-137 https://doi.org/10.5194/gmd-2017-137-supplement File ‘Oyster_growth_run.Rd’: https://doi.org/10.5194/gmd-2017-137 https://doi.org/10.5194/gmd-2017-137-supplement File ‘Oyster_height.Rd’: https://doi.org/10.5194/gmd-2017-137-supplement File ‘Oyster_import_BMP.Rd’: https://doi.org/10.5194/gmd-2017-137 https://doi.org/10.5194/gmd-2017-137-supplement File ‘Oyster_import_TIF.Rd’: https://doi.org/10.5194/gmd-2017-137 https://doi.org/10.5194/gmd-2017-137-supplement File ‘Oyster_import_phases.Rd’: https://doi.org/10.5194/gmd-2017-137 https://doi.org/10.5194/gmd-2017-137-supplement File ‘Oyster_incr_area.Rd’: https://doi.org/10.5194/gmd-2017-137 https://doi.org/10.5194/gmd-2017-137-supplement File ‘Oyster_incr_cross_section.Rd’: https://doi.org/10.5194/gmd-2017-137 https://doi.org/10.5194/gmd-2017-137-supplement File ‘Oyster_length.Rd’: https://doi.org/10.5194/gmd-2017-137-supplement File ‘Oyster_phase_export.Rd’: https://doi.org/10.5194/gmd-2017-137 https://doi.org/10.5194/gmd-2017-137-supplement File ‘Oyster_phase_matrix_BMP.Rd’: https://doi.org/10.5194/gmd-2017-137 https://doi.org/10.5194/gmd-2017-137-supplement File ‘Oyster_phase_matrix_TIF.Rd’: https://doi.org/10.5194/gmd-2017-137 https://doi.org/10.5194/gmd-2017-137-supplement File ‘Oyster_phase_run.Rd’: https://doi.org/10.5194/gmd-2017-137 https://doi.org/10.5194/gmd-2017-137-supplement File ‘Oyster_phase_stats.Rd’: https://doi.org/10.5194/gmd-2017-137 https://doi.org/10.5194/gmd-2017-137-supplement File ‘Oyster_plot_cross_section.Rd’: https://doi.org/10.5194/gmd-2017-137 https://doi.org/10.5194/gmd-2017-137-supplement File ‘Oyster_plot_incr_CS.Rd’: https://doi.org/10.5194/gmd-2017-137 https://doi.org/10.5194/gmd-2017-137-supplement File ‘Oyster_plot_incr_fill.Rd’: https://doi.org/10.5194/gmd-2017-137 https://doi.org/10.5194/gmd-2017-137-supplement File ‘Oyster_run_sec2.Rd’: https://doi.org/10.5194/gmd-2017-137 https://doi.org/10.5194/gmd-2017-137-supplement File ‘Oyster_run_sec3.Rd’: https://doi.org/10.5194/gmd-2017-137 https://doi.org/10.5194/gmd-2017-137-supplement File ‘Oyster_run_sec4.Rd’: https://doi.org/10.5194/gmd-2017-137 https://doi.org/10.5194/gmd-2017-137-supplement File ‘Oyster_run_sec5.Rd’: https://doi.org/10.5194/gmd-2017-137 https://doi.org/10.5194/gmd-2017-137-supplement File ‘Oyster_run_sec6.Rd’: https://doi.org/10.5194/gmd-2017-137 https://doi.org/10.5194/gmd-2017-137-supplement File ‘Oyster_subincr_area.Rd’: https://doi.org/10.5194/gmd-2017-137 https://doi.org/10.5194/gmd-2017-137-supplement File ‘Oyster_subincr_av_thickness.Rd’: https://doi.org/10.5194/gmd-2017-137 https://doi.org/10.5194/gmd-2017-137-supplement File ‘Oyster_subincr_av_thickness_X.Rd’: https://doi.org/10.5194/gmd-2017-137 https://doi.org/10.5194/gmd-2017-137-supplement File ‘Oyster_subincr_phases.Rd’: https://doi.org/10.5194/gmd-2017-137 https://doi.org/10.5194/gmd-2017-137-supplement File ‘Oyster_subincr_shell_height.Rd’: https://doi.org/10.5194/gmd-2017-137 https://doi.org/10.5194/gmd-2017-137-supplement File ‘ShellTrace-package.Rd’: https://doi.org/10.5194/gmd-2017-137 https://doi.org/10.5194/gmd-2017-137-supplement File ‘TIF.Rd’: https://doi.org/10.5194/gmd-2017-137-supplement File ‘Z_mat.Rd’: https://doi.org/10.5194/gmd-2017-137-supplement File ‘cross_section.Rd’: https://doi.org/10.5194/gmd-2017-137-supplement File ‘el_time.Rd’: https://doi.org/10.5194/gmd-2017-137-supplement File ‘image_length.Rd’: https://doi.org/10.5194/gmd-2017-137-supplement File ‘incr_matrix0.Rd’: https://doi.org/10.5194/gmd-2017-137-supplement File ‘incr_matrix1.Rd’: https://doi.org/10.5194/gmd-2017-137-supplement File ‘incr_matrix2.Rd’: https://doi.org/10.5194/gmd-2017-137-supplement File ‘incr_matrix3.Rd’: https://doi.org/10.5194/gmd-2017-137-supplement File ‘lengthfactor.Rd’: https://doi.org/10.5194/gmd-2017-137-supplement File ‘phase_mat.Rd’: https://doi.org/10.5194/gmd-2017-137-supplement File ‘phase_stat.Rd’: https://doi.org/10.5194/gmd-2017-137-supplement File ‘phasemat.Rd’: https://doi.org/10.5194/gmd-2017-137-supplement File ‘pixelsize.Rd’: https://doi.org/10.5194/gmd-2017-137-supplement File ‘pma.Rd’: https://doi.org/10.5194/gmd-2017-137 https://doi.org/10.5194/gmd-2017-137-supplement File ‘subincr_matrix0.Rd’: https://doi.org/10.5194/gmd-2017-137-supplement File ‘subincr_matrix1.Rd’: https://doi.org/10.5194/gmd-2017-137-supplement File ‘subincr_matrix2.Rd’: https://doi.org/10.5194/gmd-2017-137-supplement File ‘subincr_matrix3.Rd’: https://doi.org/10.5194/gmd-2017-137-supplement File ‘subincr_matrix4.Rd’: https://doi.org/10.5194/gmd-2017-137-supplement File ‘subincr_matrix5.Rd’: https://doi.org/10.5194/gmd-2017-137-supplement File ‘subincr_matrix6.Rd’: https://doi.org/10.5194/gmd-2017-137-supplement * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking serialization versions ... OK * checking whether package ‘shelltrace’ can be installed ... OK See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-debian-gcc/shelltrace-00install.html' for details. * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [0s/0s] OK * checking whether the package can be loaded with stated dependencies ... [0s/0s] OK * checking whether the package can be unloaded cleanly ... [0s/0s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK * checking whether the namespace can be unloaded cleanly ... [0s/0s] OK * checking loading without being on the library search path ... [0s/0s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [5s/6s] OK * checking Rd files ... [1s/1s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [7s/8s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... [9s/11s] OK * checking PDF version of manual ... [5s/8s] OK * checking HTML version of manual ... [2s/3s] OK * checking for non-standard things in the check directory ... OK * DONE Status: 1 NOTE