• using R Under development (unstable) (2025-06-27 r88363)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-14 (Debian 14.2.0-19) 14.2.0     GNU Fortran (Debian 14.2.0-19) 14.2.0
• running under: Debian GNU/Linux 13 (trixie)
• using session charset: UTF-8
• checking for file ‘shelltrace/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘shelltrace’ version ‘3.5.1’
• checking CRAN incoming feasibility ... [1s/1s] NOTE Maintainer: ‘Niels J. de Winter <niels.de.winter@vub.be>’ No Authors@R field in DESCRIPTION. Please add one, modifying   Authors@R: person(given = c("Niels", "J."),                     family = "de Winter",                     role = c("aut", "cre"),                     email = "niels.de.winter@vub.be") as necessary. Package CITATION file contains call(s) to old-style personList() or as.personList(). Please use c() on person objects instead. Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead. Found the following URLs which should use \doi (with the DOI name only):   File ‘BMP.Rd’:     https://doi.org/10.5194/gmd-2017-137-supplement   File ‘IncG.Rd’:     https://doi.org/10.5194/gmd-2017-137-supplement   File ‘M_el_mat.Rd’:     https://doi.org/10.5194/gmd-2017-137-supplement   File ‘M_el_mat_c.Rd’:     https://doi.org/10.5194/gmd-2017-137-supplement   File ‘O1_input.Rd’:     https://doi.org/10.5194/gmd-2017-137-supplement   File ‘O1_phase.Rd’:     https://doi.org/10.5194/gmd-2017-137-supplement   File ‘Oyster_Convert_cross_section.Rd’:     https://doi.org/10.5194/gmd-2017-137     https://doi.org/10.5194/gmd-2017-137-supplement   File ‘Oyster_Export.Rd’:     https://doi.org/10.5194/gmd-2017-137     https://doi.org/10.5194/gmd-2017-137-supplement   File ‘Oyster_Mass_gain.Rd’:     https://doi.org/10.5194/gmd-2017-137     https://doi.org/10.5194/gmd-2017-137-supplement   File ‘Oyster_Shell_height.Rd’:     https://doi.org/10.5194/gmd-2017-137     https://doi.org/10.5194/gmd-2017-137-supplement   File ‘Oyster_Shell_thickness.Rd’:     https://doi.org/10.5194/gmd-2017-137     https://doi.org/10.5194/gmd-2017-137-supplement   File ‘Oyster_Volumes.Rd’:     https://doi.org/10.5194/gmd-2017-137     https://doi.org/10.5194/gmd-2017-137-supplement   File ‘Oyster_Z_matrices.Rd’:     https://doi.org/10.5194/gmd-2017-137     https://doi.org/10.5194/gmd-2017-137-supplement   File ‘Oyster_accumulation.Rd’:     https://doi.org/10.5194/gmd-2017-137     https://doi.org/10.5194/gmd-2017-137-supplement   File ‘Oyster_combined_run.Rd’:     https://doi.org/10.5194/gmd-2017-137     https://doi.org/10.5194/gmd-2017-137-supplement   File ‘Oyster_el_time.Rd’:     https://doi.org/10.5194/gmd-2017-137     https://doi.org/10.5194/gmd-2017-137-supplement   File ‘Oyster_ellipse_parameters.Rd’:     https://doi.org/10.5194/gmd-2017-137     https://doi.org/10.5194/gmd-2017-137-supplement   File ‘Oyster_growth_run.Rd’:     https://doi.org/10.5194/gmd-2017-137     https://doi.org/10.5194/gmd-2017-137-supplement   File ‘Oyster_height.Rd’:     https://doi.org/10.5194/gmd-2017-137-supplement   File ‘Oyster_import_BMP.Rd’:     https://doi.org/10.5194/gmd-2017-137     https://doi.org/10.5194/gmd-2017-137-supplement   File ‘Oyster_import_TIF.Rd’:     https://doi.org/10.5194/gmd-2017-137     https://doi.org/10.5194/gmd-2017-137-supplement   File ‘Oyster_import_phases.Rd’:     https://doi.org/10.5194/gmd-2017-137     https://doi.org/10.5194/gmd-2017-137-supplement   File ‘Oyster_incr_area.Rd’:     https://doi.org/10.5194/gmd-2017-137     https://doi.org/10.5194/gmd-2017-137-supplement   File ‘Oyster_incr_cross_section.Rd’:     https://doi.org/10.5194/gmd-2017-137     https://doi.org/10.5194/gmd-2017-137-supplement   File ‘Oyster_length.Rd’:     https://doi.org/10.5194/gmd-2017-137-supplement   File ‘Oyster_phase_export.Rd’:     https://doi.org/10.5194/gmd-2017-137     https://doi.org/10.5194/gmd-2017-137-supplement   File ‘Oyster_phase_matrix_BMP.Rd’:     https://doi.org/10.5194/gmd-2017-137     https://doi.org/10.5194/gmd-2017-137-supplement   File ‘Oyster_phase_matrix_TIF.Rd’:     https://doi.org/10.5194/gmd-2017-137     https://doi.org/10.5194/gmd-2017-137-supplement   File ‘Oyster_phase_run.Rd’:     https://doi.org/10.5194/gmd-2017-137     https://doi.org/10.5194/gmd-2017-137-supplement   File ‘Oyster_phase_stats.Rd’:     https://doi.org/10.5194/gmd-2017-137     https://doi.org/10.5194/gmd-2017-137-supplement   File ‘Oyster_plot_cross_section.Rd’:     https://doi.org/10.5194/gmd-2017-137     https://doi.org/10.5194/gmd-2017-137-supplement   File ‘Oyster_plot_incr_CS.Rd’:     https://doi.org/10.5194/gmd-2017-137     https://doi.org/10.5194/gmd-2017-137-supplement   File ‘Oyster_plot_incr_fill.Rd’:     https://doi.org/10.5194/gmd-2017-137     https://doi.org/10.5194/gmd-2017-137-supplement   File ‘Oyster_run_sec2.Rd’:     https://doi.org/10.5194/gmd-2017-137     https://doi.org/10.5194/gmd-2017-137-supplement   File ‘Oyster_run_sec3.Rd’:     https://doi.org/10.5194/gmd-2017-137     https://doi.org/10.5194/gmd-2017-137-supplement   File ‘Oyster_run_sec4.Rd’:     https://doi.org/10.5194/gmd-2017-137     https://doi.org/10.5194/gmd-2017-137-supplement   File ‘Oyster_run_sec5.Rd’:     https://doi.org/10.5194/gmd-2017-137     https://doi.org/10.5194/gmd-2017-137-supplement   File ‘Oyster_run_sec6.Rd’:     https://doi.org/10.5194/gmd-2017-137     https://doi.org/10.5194/gmd-2017-137-supplement   File ‘Oyster_subincr_area.Rd’:     https://doi.org/10.5194/gmd-2017-137     https://doi.org/10.5194/gmd-2017-137-supplement   File ‘Oyster_subincr_av_thickness.Rd’:     https://doi.org/10.5194/gmd-2017-137     https://doi.org/10.5194/gmd-2017-137-supplement   File ‘Oyster_subincr_av_thickness_X.Rd’:     https://doi.org/10.5194/gmd-2017-137     https://doi.org/10.5194/gmd-2017-137-supplement   File ‘Oyster_subincr_phases.Rd’:     https://doi.org/10.5194/gmd-2017-137     https://doi.org/10.5194/gmd-2017-137-supplement   File ‘Oyster_subincr_shell_height.Rd’:     https://doi.org/10.5194/gmd-2017-137     https://doi.org/10.5194/gmd-2017-137-supplement   File ‘ShellTrace-package.Rd’:     https://doi.org/10.5194/gmd-2017-137     https://doi.org/10.5194/gmd-2017-137-supplement   File ‘TIF.Rd’:     https://doi.org/10.5194/gmd-2017-137-supplement   File ‘Z_mat.Rd’:     https://doi.org/10.5194/gmd-2017-137-supplement   File ‘cross_section.Rd’:     https://doi.org/10.5194/gmd-2017-137-supplement   File ‘el_time.Rd’:     https://doi.org/10.5194/gmd-2017-137-supplement   File ‘image_length.Rd’:     https://doi.org/10.5194/gmd-2017-137-supplement   File ‘incr_matrix0.Rd’:     https://doi.org/10.5194/gmd-2017-137-supplement   File ‘incr_matrix1.Rd’:     https://doi.org/10.5194/gmd-2017-137-supplement   File ‘incr_matrix2.Rd’:     https://doi.org/10.5194/gmd-2017-137-supplement   File ‘incr_matrix3.Rd’:     https://doi.org/10.5194/gmd-2017-137-supplement   File ‘lengthfactor.Rd’:     https://doi.org/10.5194/gmd-2017-137-supplement   File ‘phase_mat.Rd’:     https://doi.org/10.5194/gmd-2017-137-supplement   File ‘phase_stat.Rd’:     https://doi.org/10.5194/gmd-2017-137-supplement   File ‘phasemat.Rd’:     https://doi.org/10.5194/gmd-2017-137-supplement   File ‘pixelsize.Rd’:     https://doi.org/10.5194/gmd-2017-137-supplement   File ‘pma.Rd’:     https://doi.org/10.5194/gmd-2017-137     https://doi.org/10.5194/gmd-2017-137-supplement   File ‘subincr_matrix0.Rd’:     https://doi.org/10.5194/gmd-2017-137-supplement   File ‘subincr_matrix1.Rd’:     https://doi.org/10.5194/gmd-2017-137-supplement   File ‘subincr_matrix2.Rd’:     https://doi.org/10.5194/gmd-2017-137-supplement   File ‘subincr_matrix3.Rd’:     https://doi.org/10.5194/gmd-2017-137-supplement   File ‘subincr_matrix4.Rd’:     https://doi.org/10.5194/gmd-2017-137-supplement   File ‘subincr_matrix5.Rd’:     https://doi.org/10.5194/gmd-2017-137-supplement   File ‘subincr_matrix6.Rd’:     https://doi.org/10.5194/gmd-2017-137-supplement
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘shelltrace’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/0s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
• checking loading without being on the library search path ... [0s/0s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [5s/7s] OK
• checking Rd files ... [1s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [6s/6s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking examples ... [9s/11s] OK
• checking PDF version of manual ... [5s/8s] OK
• checking HTML version of manual ... [2s/3s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 NOTE