* using log directory ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/sharp.Rcheck’
* using R Under development (unstable) (2025-07-15 r88411)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc-14 (Debian 14.2.0-19) 14.2.0
    GNU Fortran (Debian 14.2.0-19) 14.2.0
* running under: Debian GNU/Linux 13 (trixie)
* using session charset: UTF-8
* checking for file ‘sharp/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘sharp’ version ‘1.4.7’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [2s/2s] OK
* checking package namespace information ... OK
* checking package dependencies ... INFO
Package suggested but not available for checking: ‘rCOSA’
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘sharp’ can be installed ... OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-debian-gcc/sharp-00install.html' for details.
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s/0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
* checking loading without being on the library search path ... [0s/0s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [16s/19s] OK
* checking Rd files ... [2s/2s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... INFO
Package unavailable to check Rd xrefs: ‘rCOSA’
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... [23s/25s] ERROR
Running examples in ‘sharp-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: SelectionAlgo
> ### Title: Variable selection algorithm
> ### Aliases: SelectionAlgo
> 
> ### ** Examples
> 
> # Data simulation (univariate outcome)
> set.seed(1)
> simul <- SimulateRegression(pk = 50)
> 
> # Running the LASSO
> mylasso <- SelectionAlgo(
+   xdata = simul$xdata, ydata = simul$ydata,
+   Lambda = c(0.1, 0.2), family = "gaussian",
+ )
> 
> # Data simulation (multivariate outcome)
> set.seed(1)
> simul <- SimulateRegression(pk = 50, q = 3)
> 
> # Running multivariate Gaussian LASSO
> mylasso <- SelectionAlgo(
+   xdata = simul$xdata, ydata = simul$ydata,
+   Lambda = c(0.1, 0.2), family = "mgaussian"
+ )
Error in `[<-`(`*tmp*`, rownames(tmpbeta), colnames(tmpbeta), y_id, value = tmpbeta) : 
  subscript out of bounds
Calls: SelectionAlgo -> do.call -> <Anonymous>
Execution halted
Examples with CPU (user + system) or elapsed time > 5s
            user system elapsed
PredictPLS 5.178  0.111   5.731
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [1s/2s] OK
  Running ‘testthat.R’ [1s/1s]
* checking PDF version of manual ... [10s/13s] OK
* checking HTML version of manual ... [4s/7s] OK
* checking for non-standard things in the check directory ... OK
* DONE
Status: 1 ERROR