• using R Under development (unstable) (2026-07-30 r90327)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-07-31 17:46:37 UTC
• checking for file ‘sfinx/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘sfinx’ version ‘1.7.99’
• checking CRAN incoming feasibility ... [1s/2s] NOTE Maintainer: ‘Kevin Titeca <sfinxinteractomics@gmail.com>’ Package CITATION file contains call(s) to old-style personList() or as.personList(). Please use c() on person objects instead. Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead.
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘sfinx’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/0s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
• checking loading without being on the library search path ... [0s/0s] OK
• checking whether startup messages can be suppressed ... [0s/0s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [3s/5s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [1s/1s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [1s/3s] OK   Running ‘testthat.R’ [1s/2s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [2s/3s] OK
• checking PDF version of manual ... [4s/5s] OK
• checking HTML version of manual ... [0s/0s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp1RhGB5’ ‘~/tmp/scratch/Rtmp1nrGcS’   ‘~/tmp/scratch/Rtmp2E1GuC’ ‘~/tmp/scratch/Rtmp3IVHF7’   ‘~/tmp/scratch/Rtmp45iipq’ ‘~/tmp/scratch/Rtmp47AsyT’   ‘~/tmp/scratch/Rtmp4E74ev’ ‘~/tmp/scratch/Rtmp4erpiO’   ‘~/tmp/scratch/Rtmp5n16ro’ ‘~/tmp/scratch/Rtmp5zOg9k’   ‘~/tmp/scratch/Rtmp6cx9hQ’ ‘~/tmp/scratch/Rtmp7pVyJy’   ‘~/tmp/scratch/Rtmp8RIuZa’ ‘~/tmp/scratch/Rtmp93jvNZ’   ‘~/tmp/scratch/RtmpAME0b3’ ‘~/tmp/scratch/RtmpB8joNF’   ‘~/tmp/scratch/RtmpBaHDUb’ ‘~/tmp/scratch/RtmpBpOR9P’   ‘~/tmp/scratch/RtmpCVbs1O’ ‘~/tmp/scratch/RtmpDUHMNI’   ‘~/tmp/scratch/RtmpEkFCMr’ ‘~/tmp/scratch/RtmpEmfMZc’   ‘~/tmp/scratch/RtmpFgVah6’ ‘~/tmp/scratch/RtmpHVOJW7’   ‘~/tmp/scratch/RtmpHkBMI3’ ‘~/tmp/scratch/RtmpI2SBQY’   ‘~/tmp/scratch/RtmpIQw0xB’ ‘~/tmp/scratch/RtmpIzJXb0’   ‘~/tmp/scratch/RtmpJWujJY’ ‘~/tmp/scratch/RtmpJaVLmb’   ‘~/tmp/scratch/RtmpL1li7M’ ‘~/tmp/scratch/RtmpLxY0Ta’   ‘~/tmp/scratch/RtmpMtRwuY’ ‘~/tmp/scratch/RtmpNI9dzQ’   ‘~/tmp/scratch/RtmpPmXZpl’ ‘~/tmp/scratch/RtmpQcgN8m’   ‘~/tmp/scratch/RtmpRXR9oL’ ‘~/tmp/scratch/RtmpRoK3S7’   ‘~/tmp/scratch/RtmpSfNHcz’ ‘~/tmp/scratch/RtmpTJgFZs’   ‘~/tmp/scratch/RtmpTxi9Lc’ ‘~/tmp/scratch/RtmpUDLV9r’   ‘~/tmp/scratch/RtmpUQ7JwG’ ‘~/tmp/scratch/RtmpUbMkCs’   ‘~/tmp/scratch/RtmpUtkjuM’ ‘~/tmp/scratch/RtmpVJ7qPq’   ‘~/tmp/scratch/RtmpWhxPVM’ ‘~/tmp/scratch/RtmpXVxchT’   ‘~/tmp/scratch/RtmpXXLcO1’ ‘~/tmp/scratch/RtmpXdG0If’   ‘~/tmp/scratch/RtmpXhBaHx’ ‘~/tmp/scratch/RtmpXiukis’   ‘~/tmp/scratch/RtmpYFDuD2’ ‘~/tmp/scratch/RtmpZ7OI1u’   ‘~/tmp/scratch/RtmpZA1qOO’ ‘~/tmp/scratch/RtmpaDuJJE’   ‘~/tmp/scratch/RtmpaH4FqI’ ‘~/tmp/scratch/RtmpaaqIJc’   ‘~/tmp/scratch/RtmpanKbRW’ ‘~/tmp/scratch/Rtmpc8liVg’   ‘~/tmp/scratch/RtmpcUG7D7’ ‘~/tmp/scratch/Rtmpd2XhKU’   ‘~/tmp/scratch/RtmpdAuaNF’ ‘~/tmp/scratch/RtmpdbIZHS’   ‘~/tmp/scratch/RtmpeB2FhY’ ‘~/tmp/scratch/RtmpeW3nYl’   ‘~/tmp/scratch/Rtmpek1hup’ ‘~/tmp/scratch/Rtmpht4xyJ’   ‘~/tmp/scratch/RtmpiJJCyD’ ‘~/tmp/scratch/RtmpiQBUUq’   ‘~/tmp/scratch/RtmpkwBcmI’ ‘~/tmp/scratch/Rtmpl9ZuP9’   ‘~/tmp/scratch/RtmplDXBos’ ‘~/tmp/scratch/RtmpmRpJsF’   ‘~/tmp/scratch/RtmpmnU5Kg’ ‘~/tmp/scratch/Rtmpns7Djo’   ‘~/tmp/scratch/RtmpoR1CFC’ ‘~/tmp/scratch/RtmpoTySWV’   ‘~/tmp/scratch/RtmppntksB’ ‘~/tmp/scratch/RtmpqloHZ7’   ‘~/tmp/scratch/Rtmpqrvr42’ ‘~/tmp/scratch/RtmpqwKXGv’   ‘~/tmp/scratch/RtmprVK53X’ ‘~/tmp/scratch/RtmpsUrR5H’   ‘~/tmp/scratch/RtmpsXcmSn’ ‘~/tmp/scratch/RtmpsbgxvC’   ‘~/tmp/scratch/RtmptCgzFu’ ‘~/tmp/scratch/RtmpuBgv5V’   ‘~/tmp/scratch/RtmpuhDwUC’ ‘~/tmp/scratch/RtmpvSeyXu’   ‘~/tmp/scratch/RtmpvqfqgX’ ‘~/tmp/scratch/RtmpwNpqlT’   ‘~/tmp/scratch/RtmpxrpLx5’ ‘~/tmp/scratch/RtmpyAuzhS’   ‘~/tmp/scratch/RtmpyBXKID’ ‘~/tmp/scratch/RtmpyFi7gd’   ‘~/tmp/scratch/xvfb-run.3L0VDx’ ‘~/tmp/scratch/xvfb-run.Hg6OvS’   ‘~/tmp/scratch/xvfb-run.I7Xnkg’ ‘~/tmp/scratch/xvfb-run.LSXnJw’   ‘~/tmp/scratch/xvfb-run.PSpy5a’ ‘~/tmp/scratch/xvfb-run.PqWqsn’   ‘~/tmp/scratch/xvfb-run.SvKYuY’ ‘~/tmp/scratch/xvfb-run.WsnwCy’   ‘~/tmp/scratch/xvfb-run.XjANyH’ ‘~/tmp/scratch/xvfb-run.YBvFOa’   ‘~/tmp/scratch/xvfb-run.ayWafi’ ‘~/tmp/scratch/xvfb-run.cgBzP3’   ‘~/tmp/scratch/xvfb-run.eNkb9d’ ‘~/tmp/scratch/xvfb-run.f39tZp’   ‘~/tmp/scratch/xvfb-run.i1dQD3’ ‘~/tmp/scratch/xvfb-run.iu55UZ’   ‘~/tmp/scratch/xvfb-run.jZr5pu’ ‘~/tmp/scratch/xvfb-run.l16y0z’   ‘~/tmp/scratch/xvfb-run.lyIkqD’ ‘~/tmp/scratch/xvfb-run.pMAhj2’   ‘~/tmp/scratch/xvfb-run.zvPewB’
• DONE

Status: 2 NOTEs