* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’
* installing *source* package ‘sequoia’ ...
** this is package ‘sequoia’ version ‘3.1.3’
** package ‘sequoia’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-7) 15.2.0’
using Fortran compiler: ‘GNU Fortran (Debian 15.2.0-7) 15.2.0’
make[1]: Entering directory '/tmp/Rtmpzp4TT2/R.INSTALL20b7b25b2b8cd6/sequoia/src'
gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c MkRelA.f90 -o MkRelA.o
gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c Sequoia.f90 -o Sequoia.o
Sequoia.f90:3913:53:
3913 | double precision :: LLcp(3,2), LLU(4), U, ALR(3,2), ALRtmp, LLtmp, LLtrio(6), &
| 1~~~~~
Warning: Unused variable ‘alrtmp’ declared at (1) [-Wunused-variable]
Sequoia.f90:16080:35:
16080 | integer :: i, r, AncB(2,mxA), Bi, AncBi(2, mxA), catA, catB, GA(2), catG, &
| 1~~~~~~~~~~~~
Warning: Unused variable ‘ancbi’ declared at (1) [-Wunused-variable]
gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c SimGenoErrors.f90 -o SimGenoErrors.o
gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c countpairOH.f90 -o countpairOH.o
countpairOH.f90:2:2:
2 | implicit none
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
countpairOH.f90:4:2:
4 | integer, intent(IN) :: ng, nm, np, maxoh
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
countpairOH.f90:5:2:
5 | integer, intent(IN) :: pairids(2*np), genofr(ng*nm)
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
countpairOH.f90:6:2:
6 | integer, intent(INOUT) :: ohrf(np)
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
countpairOH.f90:7:2:
7 | integer :: i,j, l,x, pairs(np, 2), Genos(nm, ng), IsOppHom(-1:2,-1:2)
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
countpairOH.f90:9:2:
9 | pairs(:,1) = pairids(1:np)
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
countpairOH.f90:10:2:
10 | pairs(:,2) = pairids((np+1):(2*np))
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
countpairOH.f90:13:2:
13 | Genos = -1
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
countpairOH.f90:14:2:
14 | j = 0
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
countpairOH.f90:15:2:
15 | do l=1,nm
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
countpairOH.f90:16:2:
16 | do i=1, ng
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
countpairOH.f90:17:2:
17 | j = j+1
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
countpairOH.f90:18:2:
18 | if (GenoFR(j)>=0) then
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
countpairOH.f90:19:2:
19 | Genos(l,i) = GenoFR(j)
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
countpairOH.f90:20:2:
20 | endif
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
countpairOH.f90:21:2:
21 | enddo
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
countpairOH.f90:22:2:
22 | enddo
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
countpairOH.f90:25:2:
25 | IsOppHom = 0
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
countpairOH.f90:30:2:
30 | do x=1, np
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
countpairOH.f90:32:2:
32 | ohrf(x) = calcOH(pairs(x,1), pairs(x,2))
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
countpairOH.f90:33:2:
33 | enddo
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
countpairOH.f90:37:2:
37 | integer function calcOH(i,j) result(OH_ij)
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c ester.f90 -o ester.o
gcc-15 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o
gcc-15 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pretty_R_print.c -o pretty_R_print.o
gcc-15 -shared -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -Wl,-O1 -o sequoia.so MkRelA.o Sequoia.o SimGenoErrors.o countpairOH.o ester.o init.o pretty_R_print.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/Rtmpzp4TT2/R.INSTALL20b7b25b2b8cd6/sequoia/src'
make[1]: Entering directory '/tmp/Rtmpzp4TT2/R.INSTALL20b7b25b2b8cd6/sequoia/src'
make[1]: Leaving directory '/tmp/Rtmpzp4TT2/R.INSTALL20b7b25b2b8cd6/sequoia/src'
installing to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/00LOCK-sequoia/00new/sequoia/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (sequoia)