• using R Under development (unstable) (2026-07-30 r90327)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-07-31 17:45:23 UTC
• checking for file ‘seqtrie/DESCRIPTION’ ... OK
• this is package ‘seqtrie’ version ‘0.4.0’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [2s/2s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘seqtrie’ can be installed ... OK See the install log for details.
• used C++ compiler: ‘g++-16 (Debian 16.1.0-3) 16.1.0’
• checking C++ specification ... INFO   specified C++17
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/1s] OK
• checking loading without being on the library search path ... [0s/1s] OK
• checking whether startup messages can be suppressed ... [0s/1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [5s/7s] OK
• checking Rd files ... [0s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [1s/1s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... INFO GNU make is a SystemRequirements.
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [1s/2s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [89s/89s] OK   Running ‘test_RadixForest.R’ [4s/3s]   Running ‘test_RadixTree.R’ [8s/9s]   Running ‘test_StarTree.R’ [62s/57s]   Running ‘test_pairwise.R’ [13s/18s]   Running ‘test_utilities.R’ [1s/2s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [2s/3s] OK
• checking PDF version of manual ... [5s/7s] OK
• checking HTML version of manual ... [1s/2s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0LQ0N0’ ‘~/tmp/scratch/Rtmp1BIeaf’   ‘~/tmp/scratch/Rtmp1GHFFI’ ‘~/tmp/scratch/Rtmp1HkCil’   ‘~/tmp/scratch/Rtmp1WLyU6’ ‘~/tmp/scratch/Rtmp1nrGcS’   ‘~/tmp/scratch/Rtmp23zEqs’ ‘~/tmp/scratch/Rtmp265PE4’   ‘~/tmp/scratch/Rtmp2brlEx’ ‘~/tmp/scratch/Rtmp2qqvyq’   ‘~/tmp/scratch/Rtmp2tZIq7’ ‘~/tmp/scratch/Rtmp3XIDjo’   ‘~/tmp/scratch/Rtmp3lkX5E’ ‘~/tmp/scratch/Rtmp47LcO0’   ‘~/tmp/scratch/Rtmp4I4osq’ ‘~/tmp/scratch/Rtmp4X1TSH’   ‘~/tmp/scratch/Rtmp4vbVsJ’ ‘~/tmp/scratch/Rtmp5fKfhc’   ‘~/tmp/scratch/Rtmp6Brw58’ ‘~/tmp/scratch/Rtmp6LkHOi’   ‘~/tmp/scratch/Rtmp6X9ABf’ ‘~/tmp/scratch/Rtmp6cx9hQ’   ‘~/tmp/scratch/Rtmp7Kf33g’ ‘~/tmp/scratch/Rtmp7fUQGT’   ‘~/tmp/scratch/Rtmp7pVyJy’ ‘~/tmp/scratch/Rtmp8dBHPa’   ‘~/tmp/scratch/Rtmp8qY9Cl’ ‘~/tmp/scratch/Rtmp93jvNZ’   ‘~/tmp/scratch/RtmpA9eWtI’ ‘~/tmp/scratch/RtmpAbbEZX’   ‘~/tmp/scratch/RtmpAtyYmB’ ‘~/tmp/scratch/RtmpAwRsrA’   ‘~/tmp/scratch/RtmpBHVLFd’ ‘~/tmp/scratch/RtmpBRVGfQ’   ‘~/tmp/scratch/RtmpCCLd8p’ ‘~/tmp/scratch/RtmpCZvCaZ’   ‘~/tmp/scratch/RtmpCbjup8’ ‘~/tmp/scratch/RtmpDUHMNI’   ‘~/tmp/scratch/RtmpDtETsi’ ‘~/tmp/scratch/RtmpDzHEbO’   ‘~/tmp/scratch/RtmpEmfMZc’ ‘~/tmp/scratch/RtmpEnEqxG’   ‘~/tmp/scratch/RtmpEoVSYS’ ‘~/tmp/scratch/RtmpEsffCm’   ‘~/tmp/scratch/RtmpF2K1BE’ ‘~/tmp/scratch/RtmpFdDWvX’   ‘~/tmp/scratch/RtmpFx2kwU’ ‘~/tmp/scratch/RtmpG8HpNe’   ‘~/tmp/scratch/RtmpGqf927’ ‘~/tmp/scratch/RtmpH82qMb’   ‘~/tmp/scratch/RtmpHBHjSh’ ‘~/tmp/scratch/RtmpI4EIwN’   ‘~/tmp/scratch/RtmpI8Eynn’ ‘~/tmp/scratch/RtmpICdVHu’   ‘~/tmp/scratch/RtmpIm6i66’ ‘~/tmp/scratch/RtmpJ447HU’   ‘~/tmp/scratch/RtmpJ4tynV’ ‘~/tmp/scratch/RtmpJKk5Px’   ‘~/tmp/scratch/RtmpJaVLmb’ ‘~/tmp/scratch/RtmpKFfynH’   ‘~/tmp/scratch/RtmpKcb3Um’ ‘~/tmp/scratch/RtmpKxu1Po’   ‘~/tmp/scratch/RtmpL1li7M’ ‘~/tmp/scratch/RtmpLNMsLY’   ‘~/tmp/scratch/RtmpLRF539’ ‘~/tmp/scratch/RtmpLSuZKt’   ‘~/tmp/scratch/RtmpLYC3UB’ ‘~/tmp/scratch/RtmpLnF5Zs’   ‘~/tmp/scratch/RtmpLxY0Ta’ ‘~/tmp/scratch/RtmpM7C9AC’   ‘~/tmp/scratch/RtmpMRE1FB’ ‘~/tmp/scratch/RtmpMs3DiB’   ‘~/tmp/scratch/RtmpNNVUsW’ ‘~/tmp/scratch/RtmpNjh4Oe’   ‘~/tmp/scratch/RtmpNvYXye’ ‘~/tmp/scratch/RtmpO8cACM’   ‘~/tmp/scratch/RtmpOBDraV’ ‘~/tmp/scratch/RtmpOCsPSD’   ‘~/tmp/scratch/RtmpOmgtZG’ ‘~/tmp/scratch/RtmpOwKfyd’   ‘~/tmp/scratch/RtmpP2CHBs’ ‘~/tmp/scratch/RtmpQCowLb’   ‘~/tmp/scratch/RtmpQcgN8m’ ‘~/tmp/scratch/RtmpQf9wFe’   ‘~/tmp/scratch/RtmpQnCrLw’ ‘~/tmp/scratch/RtmpRPp95U’   ‘~/tmp/scratch/RtmpRXR9oL’ ‘~/tmp/scratch/RtmpRoK3S7’   ‘~/tmp/scratch/RtmpTnbgCJ’ ‘~/tmp/scratch/RtmpU3iLVV’   ‘~/tmp/scratch/RtmpUZkF7F’ ‘~/tmp/scratch/RtmpW1B1Bb’   ‘~/tmp/scratch/RtmpWcyKQ2’ ‘~/tmp/scratch/RtmpWdp0Qa’   ‘~/tmp/scratch/RtmpWjY6Zb’ ‘~/tmp/scratch/RtmpWmOoHJ’   ‘~/tmp/scratch/RtmpWoFTbA’ ‘~/tmp/scratch/RtmpXhBaHx’   ‘~/tmp/scratch/RtmpY0xq2s’ ‘~/tmp/scratch/RtmpY81WgA’   ‘~/tmp/scratch/RtmpY9vm1l’ ‘~/tmp/scratch/RtmpZfwBPo’   ‘~/tmp/scratch/RtmpaaqIJc’ ‘~/tmp/scratch/Rtmpb1xj6R’   ‘~/tmp/scratch/RtmpcUG7D7’ ‘~/tmp/scratch/RtmpcdINmY’   ‘~/tmp/scratch/RtmpdAuaNF’ ‘~/tmp/scratch/RtmpdrRZms’   ‘~/tmp/scratch/RtmpeB2FhY’ ‘~/tmp/scratch/RtmpevQgdO’   ‘~/tmp/scratch/RtmpfHJpY7’ ‘~/tmp/scratch/RtmpfPN4yr’   ‘~/tmp/scratch/Rtmpfn00jF’ ‘~/tmp/scratch/RtmpgJJLJy’   ‘~/tmp/scratch/RtmpgqrSJA’ ‘~/tmp/scratch/Rtmphvkf0Z’   ‘~/tmp/scratch/RtmphzXQ7v’ ‘~/tmp/scratch/RtmpiNxnzV’   ‘~/tmp/scratch/RtmpjMW1cz’ ‘~/tmp/scratch/RtmpjjzkkA’   ‘~/tmp/scratch/Rtmpk3A4cF’ ‘~/tmp/scratch/RtmpkFv1Qi’   ‘~/tmp/scratch/RtmpkLK3Zl’ ‘~/tmp/scratch/Rtmpl6sklE’   ‘~/tmp/scratch/Rtmpl77m8U’ ‘~/tmp/scratch/RtmplLTRyx’   ‘~/tmp/scratch/RtmpmFujrX’ ‘~/tmp/scratch/RtmpmVUckp’   ‘~/tmp/scratch/RtmpmnU5Kg’ ‘~/tmp/scratch/Rtmpo5Txak’   ‘~/tmp/scratch/RtmpoBV4me’ ‘~/tmp/scratch/RtmpoR1CFC’   ‘~/tmp/scratch/RtmppMaP5Z’ ‘~/tmp/scratch/RtmppTV1gT’   ‘~/tmp/scratch/RtmppTxxr4’ ‘~/tmp/scratch/RtmppyERuh’   ‘~/tmp/scratch/RtmpqR45jQ’ ‘~/tmp/scratch/RtmprVK53X’   ‘~/tmp/scratch/RtmprpGO1u’ ‘~/tmp/scratch/RtmprsLB6I’   ‘~/tmp/scratch/Rtmprw9bPx’ ‘~/tmp/scratch/RtmpsEt0by’   ‘~/tmp/scratch/RtmptCgzFu’ ‘~/tmp/scratch/RtmptpzpSJ’   ‘~/tmp/scratch/Rtmpty3WLt’ ‘~/tmp/scratch/RtmpuOwvFg’   ‘~/tmp/scratch/RtmpuhDwUC’ ‘~/tmp/scratch/Rtmpv2yy12’   ‘~/tmp/scratch/RtmpvHec3j’ ‘~/tmp/scratch/RtmpwNpqlT’   ‘~/tmp/scratch/Rtmpwvu0xn’ ‘~/tmp/scratch/RtmpxrpLx5’   ‘~/tmp/scratch/RtmpyTDKLr’ ‘~/tmp/scratch/RtmpybSWFW’   ‘~/tmp/scratch/RtmpyeSV1g’ ‘~/tmp/scratch/RtmpzENx0m’   ‘~/tmp/scratch/RtmpzLyRHs’ ‘~/tmp/scratch/RtmpzMOojI’   ‘~/tmp/scratch/quarto-sessionc7b9241ed4daf274’   ‘~/tmp/scratch/xvfb-run.0em0wS’ ‘~/tmp/scratch/xvfb-run.1n8H0K’   ‘~/tmp/scratch/xvfb-run.3L0VDx’ ‘~/tmp/scratch/xvfb-run.6Xz5nE’   ‘~/tmp/scratch/xvfb-run.6wWXjc’ ‘~/tmp/scratch/xvfb-run.BN1n20’   ‘~/tmp/scratch/xvfb-run.BTbK9p’ ‘~/tmp/scratch/xvfb-run.DbZDsn’   ‘~/tmp/scratch/xvfb-run.GO8ciy’ ‘~/tmp/scratch/xvfb-run.HIaJnK’   ‘~/tmp/scratch/xvfb-run.HbbSkb’ ‘~/tmp/scratch/xvfb-run.I7Xnkg’   ‘~/tmp/scratch/xvfb-run.K1Sgrg’ ‘~/tmp/scratch/xvfb-run.Km8rhP’   ‘~/tmp/scratch/xvfb-run.NC1WGW’ ‘~/tmp/scratch/xvfb-run.NNc3V1’   ‘~/tmp/scratch/xvfb-run.OKuRNO’ ‘~/tmp/scratch/xvfb-run.P55yK5’   ‘~/tmp/scratch/xvfb-run.PSpy5a’ ‘~/tmp/scratch/xvfb-run.PgsWtr’   ‘~/tmp/scratch/xvfb-run.QePXmM’ ‘~/tmp/scratch/xvfb-run.TNinz4’   ‘~/tmp/scratch/xvfb-run.UmWUI6’ ‘~/tmp/scratch/xvfb-run.WmmDM6’   ‘~/tmp/scratch/xvfb-run.Wrlyvq’ ‘~/tmp/scratch/xvfb-run.Xj7bt6’   ‘~/tmp/scratch/xvfb-run.YBvFOa’ ‘~/tmp/scratch/xvfb-run.Yn2EGh’   ‘~/tmp/scratch/xvfb-run.Z4tdwu’ ‘~/tmp/scratch/xvfb-run.ZcxsYR’   ‘~/tmp/scratch/xvfb-run.ayWafi’ ‘~/tmp/scratch/xvfb-run.cgBzP3’   ‘~/tmp/scratch/xvfb-run.cmC8i1’ ‘~/tmp/scratch/xvfb-run.dgf6SR’   ‘~/tmp/scratch/xvfb-run.eNkb9d’ ‘~/tmp/scratch/xvfb-run.eetjpC’   ‘~/tmp/scratch/xvfb-run.f0s0v0’ ‘~/tmp/scratch/xvfb-run.f39tZp’   ‘~/tmp/scratch/xvfb-run.i1dQD3’ ‘~/tmp/scratch/xvfb-run.ig9qGe’   ‘~/tmp/scratch/xvfb-run.iu55UZ’ ‘~/tmp/scratch/xvfb-run.jZr5pu’   ‘~/tmp/scratch/xvfb-run.l16y0z’ ‘~/tmp/scratch/xvfb-run.nx64mB’   ‘~/tmp/scratch/xvfb-run.o1jtlR’ ‘~/tmp/scratch/xvfb-run.pMAhj2’   ‘~/tmp/scratch/xvfb-run.qAXzXu’ ‘~/tmp/scratch/xvfb-run.qT8U0z’   ‘~/tmp/scratch/xvfb-run.qiPIS4’ ‘~/tmp/scratch/xvfb-run.rjsxvd’   ‘~/tmp/scratch/xvfb-run.scneXL’ ‘~/tmp/scratch/xvfb-run.uDHXfm’   ‘~/tmp/scratch/xvfb-run.uFlQIM’ ‘~/tmp/scratch/xvfb-run.vOJYYk’   ‘~/tmp/scratch/xvfb-run.vQ8t24’ ‘~/tmp/scratch/xvfb-run.vbsIUM’   ‘~/tmp/scratch/xvfb-run.xB0Qvd’ ‘~/tmp/scratch/xvfb-run.yd18SY’   ‘~/tmp/scratch/xvfb-run.zceYod’ ‘~/tmp/scratch/xvfb-run.zvPewB’
• DONE

Status: 1 NOTE