- using R Under development (unstable) (2022-08-09 r82699)
- using platform: x86_64-pc-linux-gnu (64-bit)
- using session charset: UTF-8
- checking for file ‘secr/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘secr’ version ‘4.5.5’
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘secr’ can be installed ... OK
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [130s/209s] OK
- checking Rd files ... [4s/6s] NOTE
checkRd: (-1) detectfn.Rd:183: Escaped LaTeX specials: \&
checkRd: (-1) sim.popn.Rd:25: Escaped LaTeX specials: \^
checkRd: (-1) utility.Rd:47: Escaped LaTeX specials: \&
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking compilation flags in Makevars ... OK
- checking for GNU extensions in Makefiles ... NOTE
GNU make is a SystemRequirements.
- checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
- checking use of PKG_*FLAGS in Makefiles ... OK
- checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
- checking pragmas in C/C++ headers and code ... OK
- checking compilation flags used ... OK
- checking compiled code ... OK
- checking sizes of PDF files under ‘inst/doc’ ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [27s/44s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [42s/63s] OK
Running ‘testthat.R’ [42s/63s]
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes in ‘inst/doc’ ... OK
- checking re-building of vignette outputs ... [21s/36s] OK
- checking PDF version of manual ... OK
- checking HTML version of manual ... NOTE
Found the following math rendering problems:
RSE.Rd:30: Undefined control sequence: \var in ... = \sqrt {\exp(\var (\beta))-1}
Rsurface.Rd:85-86: Can't use function '\bold' in text mode in d = |\mbox{\bold{x}} - \mbox{\b...
Rsurface.Rd:92: Can't use function '\bold' in text mode in z(\mbox{\bold{x}})
Rsurface.Rd:94-95: Can't use function '\bold' in text mode in R(\mbox{\bold{s}}) = \sum_x ...
Rsurface.Rd:100-101: Can't use function '\bold' in text mode in R'(\mbox{\bold{s}}) = R(\mbox...
Rsurface.Rd:102: Can't use function '\bold' in text mode in R'(\mbox{\bold{s}})
Rsurface.Rd:104-105: Can't use function '\bold' in text mode in 1 /
R'(\mbox{\bold{s}})
Rsurface.Rd:106: Can't use function '\bold' in text mode in 1 / R(\mbox{\bold{s}})
- checking for non-standard things in the check directory ... OK
- DONE
Status: 3 NOTEs