• using R Under development (unstable) (2022-08-09 r82699)
• using platform: x86_64-pc-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘secr/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘secr’ version ‘4.5.5’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘secr’ can be installed ... OK
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [130s/209s] OK
• checking Rd files ... [4s/6s] NOTE
  checkRd: (-1) detectfn.Rd:183: Escaped LaTeX specials: \&
  checkRd: (-1) sim.popn.Rd:25: Escaped LaTeX specials: \^
  checkRd: (-1) utility.Rd:47: Escaped LaTeX specials: \&
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... NOTE
  GNU make is a SystemRequirements.
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [27s/44s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [42s/63s] OK
    Running ‘testthat.R’ [42s/63s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking re-building of vignette outputs ... [21s/36s] OK
• checking PDF version of manual ... OK
• checking HTML version of manual ... NOTE
  Found the following math rendering problems:
  RSE.Rd:30: Undefined control sequence: \var in ... = \sqrt {\exp(\var (\beta))-1}
  Rsurface.Rd:85-86: Can't use function '\bold' in text mode in d = |\mbox{\bold{x}} - \mbox{\b...
  Rsurface.Rd:92: Can't use function '\bold' in text mode in z(\mbox{\bold{x}})
  Rsurface.Rd:94-95: Can't use function '\bold' in text mode in R(\mbox{\bold{s}}) = \sum_x ...
  Rsurface.Rd:100-101: Can't use function '\bold' in text mode in R'(\mbox{\bold{s}}) = R(\mbox...
  Rsurface.Rd:102: Can't use function '\bold' in text mode in R'(\mbox{\bold{s}})
  Rsurface.Rd:104-105: Can't use function '\bold' in text mode in 1 /
      R'(\mbox{\bold{s}})
  Rsurface.Rd:106: Can't use function '\bold' in text mode in 1 / R(\mbox{\bold{s}})
• checking for non-standard things in the check directory ... OK
• DONE

Status: 3 NOTEs