• using R Under development (unstable) (2026-07-31 r90332)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-08-01 17:42:01 UTC
• checking for file ‘sctransform/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘sctransform’ version ‘0.4.3’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [2s/3s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘sctransform’ can be installed ... OK See the install log for details.
• used C++ compiler: ‘g++-16 (Debian 16.1.0-3) 16.1.0’
• checking C++ specification ... INFO   specified C++17
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [2s/3s] OK
• checking whether the package can be loaded with stated dependencies ... [3s/3s] OK
• checking whether the package can be unloaded cleanly ... [2s/3s] OK
• checking whether the namespace can be loaded with stated dependencies ... [2s/3s] OK
• checking whether the namespace can be unloaded cleanly ... [3s/3s] OK
• checking loading without being on the library search path ... [2s/3s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [16s/21s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [1s/2s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking examples ... [3s/3s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [4s/5s] OK   Running ‘testthat.R’ [4s/4s]
• checking PDF version of manual ... [4s/6s] OK
• checking HTML version of manual ... [1s/1s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0b680r’ ‘~/tmp/scratch/Rtmp0kkT03’   ‘~/tmp/scratch/Rtmp0qUHRH’ ‘~/tmp/scratch/Rtmp2c7FgW’   ‘~/tmp/scratch/Rtmp3xB420’ ‘~/tmp/scratch/Rtmp4hC3rf’   ‘~/tmp/scratch/Rtmp52jfhV’ ‘~/tmp/scratch/Rtmp56wnSN’   ‘~/tmp/scratch/Rtmp58rZJA’ ‘~/tmp/scratch/Rtmp5Ix6Ov’   ‘~/tmp/scratch/Rtmp5d1VgR’ ‘~/tmp/scratch/Rtmp5rVoBi’   ‘~/tmp/scratch/Rtmp6L10Ch’ ‘~/tmp/scratch/Rtmp6OXhBl’   ‘~/tmp/scratch/Rtmp6RnzS3’ ‘~/tmp/scratch/Rtmp74Bi7F’   ‘~/tmp/scratch/Rtmp7n4yWr’ ‘~/tmp/scratch/Rtmp9KQKME’   ‘~/tmp/scratch/Rtmp9P5fF3’ ‘~/tmp/scratch/Rtmp9RgzCm’   ‘~/tmp/scratch/Rtmp9wqMVf’ ‘~/tmp/scratch/Rtmp9xozq3’   ‘~/tmp/scratch/RtmpAHMA6g’ ‘~/tmp/scratch/RtmpAMA9Av’   ‘~/tmp/scratch/RtmpAWktKJ’ ‘~/tmp/scratch/RtmpAv2lj8’   ‘~/tmp/scratch/RtmpBSt90j’ ‘~/tmp/scratch/RtmpBjvv3Z’   ‘~/tmp/scratch/RtmpBxTpet’ ‘~/tmp/scratch/RtmpCeQ4OW’   ‘~/tmp/scratch/RtmpDU83JS’ ‘~/tmp/scratch/RtmpDbDEZh’   ‘~/tmp/scratch/RtmpDdPpO8’ ‘~/tmp/scratch/RtmpDt3HEG’   ‘~/tmp/scratch/RtmpES67YX’ ‘~/tmp/scratch/RtmpEZzIV6’   ‘~/tmp/scratch/RtmpF5fYUR’ ‘~/tmp/scratch/RtmpFOtwdc’   ‘~/tmp/scratch/RtmpFV8OVh’ ‘~/tmp/scratch/RtmpGj4KW4’   ‘~/tmp/scratch/RtmpHNQyiu’ ‘~/tmp/scratch/RtmpHY7vUe’   ‘~/tmp/scratch/RtmpI8pVHX’ ‘~/tmp/scratch/RtmpJAGPk8’   ‘~/tmp/scratch/RtmpJKzJyM’ ‘~/tmp/scratch/RtmpKUd7CU’   ‘~/tmp/scratch/RtmpLEq5bA’ ‘~/tmp/scratch/RtmpLQBDv2’   ‘~/tmp/scratch/RtmpLYr4qF’ ‘~/tmp/scratch/RtmpLtn730’   ‘~/tmp/scratch/RtmpMae42J’ ‘~/tmp/scratch/RtmpNPVZDt’   ‘~/tmp/scratch/RtmpNPXMqW’ ‘~/tmp/scratch/RtmpNRqd55’   ‘~/tmp/scratch/RtmpOI5Tte’ ‘~/tmp/scratch/RtmpOcKNpK’   ‘~/tmp/scratch/RtmpP9mntt’ ‘~/tmp/scratch/RtmpPA8jfg’   ‘~/tmp/scratch/RtmpPjFCU3’ ‘~/tmp/scratch/RtmpPjmO4b’   ‘~/tmp/scratch/RtmpPp1RxB’ ‘~/tmp/scratch/RtmpQFDjrV’   ‘~/tmp/scratch/RtmpQTJoaM’ ‘~/tmp/scratch/RtmpQaENcP’   ‘~/tmp/scratch/RtmpQwFLuC’ ‘~/tmp/scratch/RtmpR0jmDH’   ‘~/tmp/scratch/RtmpRZ8IKh’ ‘~/tmp/scratch/RtmpS7IxDd’   ‘~/tmp/scratch/RtmpSZgaOU’ ‘~/tmp/scratch/RtmpT3WKgh’   ‘~/tmp/scratch/RtmpTAkIzl’ ‘~/tmp/scratch/RtmpTNe2FE’   ‘~/tmp/scratch/RtmpTRKYVV’ ‘~/tmp/scratch/RtmpTYD86u’   ‘~/tmp/scratch/RtmpTwJMej’ ‘~/tmp/scratch/RtmpTxA5fV’   ‘~/tmp/scratch/RtmpUKfdSg’ ‘~/tmp/scratch/RtmpUenwV8’   ‘~/tmp/scratch/RtmpUxd5pi’ ‘~/tmp/scratch/RtmpVIWwE5’   ‘~/tmp/scratch/RtmpWNir2x’ ‘~/tmp/scratch/RtmpX0qLtc’   ‘~/tmp/scratch/RtmpY9uyOs’ ‘~/tmp/scratch/RtmpYo5rFM’   ‘~/tmp/scratch/RtmpZ5fg7Y’ ‘~/tmp/scratch/RtmpZXn3cq’   ‘~/tmp/scratch/RtmpaJMtIq’ ‘~/tmp/scratch/RtmpawTnk2’   ‘~/tmp/scratch/Rtmpb1Kz6q’ ‘~/tmp/scratch/Rtmpb5Vw9t’   ‘~/tmp/scratch/RtmpbsXLXB’ ‘~/tmp/scratch/Rtmpbx4WOm’   ‘~/tmp/scratch/Rtmpc986Te’ ‘~/tmp/scratch/RtmpcUNFXk’   ‘~/tmp/scratch/Rtmpd0mwI8’ ‘~/tmp/scratch/RtmpdPtvKq’   ‘~/tmp/scratch/RtmpdZ3rzU’ ‘~/tmp/scratch/RtmpdxNObU’   ‘~/tmp/scratch/RtmpeH3ipl’ ‘~/tmp/scratch/RtmpenwW03’   ‘~/tmp/scratch/Rtmpf3TFq3’ ‘~/tmp/scratch/RtmpfVaaZH’   ‘~/tmp/scratch/RtmpgBy4UZ’ ‘~/tmp/scratch/RtmphcrOY0’   ‘~/tmp/scratch/RtmpihZbIB’ ‘~/tmp/scratch/Rtmpk2Zour’   ‘~/tmp/scratch/RtmpkNgPTg’ ‘~/tmp/scratch/RtmpkPISNz’   ‘~/tmp/scratch/RtmpkwMsnW’ ‘~/tmp/scratch/RtmpltwaYe’   ‘~/tmp/scratch/RtmpmNopLT’ ‘~/tmp/scratch/RtmpnF5DCE’   ‘~/tmp/scratch/Rtmpnado20’ ‘~/tmp/scratch/Rtmpnfmqor’   ‘~/tmp/scratch/RtmpoFacKs’ ‘~/tmp/scratch/Rtmpos8pXx’   ‘~/tmp/scratch/RtmppWpV4L’ ‘~/tmp/scratch/RtmppnHbzN’   ‘~/tmp/scratch/RtmprXyGHd’ ‘~/tmp/scratch/Rtmprh8nVu’   ‘~/tmp/scratch/Rtmps5N2Vf’ ‘~/tmp/scratch/RtmpsF9GJt’   ‘~/tmp/scratch/RtmpsMSDOR’ ‘~/tmp/scratch/RtmpsgVFTm’   ‘~/tmp/scratch/Rtmpu44nNp’ ‘~/tmp/scratch/RtmpuINoZg’   ‘~/tmp/scratch/RtmpuhiHl1’ ‘~/tmp/scratch/Rtmpv1MmQm’   ‘~/tmp/scratch/RtmpvNZf8S’ ‘~/tmp/scratch/RtmpwE1dWS’   ‘~/tmp/scratch/RtmpwGrlLo’ ‘~/tmp/scratch/RtmpxHfmxj’   ‘~/tmp/scratch/RtmpxeZW4c’ ‘~/tmp/scratch/RtmpykuYX5’   ‘~/tmp/scratch/RtmpzYWOd4’ ‘~/tmp/scratch/xvfb-run.1dqiiT’   ‘~/tmp/scratch/xvfb-run.3R9QtK’ ‘~/tmp/scratch/xvfb-run.3UgV0u’   ‘~/tmp/scratch/xvfb-run.5N9ME2’ ‘~/tmp/scratch/xvfb-run.5NdoVn’   ‘~/tmp/scratch/xvfb-run.5iUi9Z’ ‘~/tmp/scratch/xvfb-run.5uIA3J’   ‘~/tmp/scratch/xvfb-run.77ijfK’ ‘~/tmp/scratch/xvfb-run.7epvO7’   ‘~/tmp/scratch/xvfb-run.7qnwwG’ ‘~/tmp/scratch/xvfb-run.81OBBW’   ‘~/tmp/scratch/xvfb-run.Ba5Zig’ ‘~/tmp/scratch/xvfb-run.DTAsAE’   ‘~/tmp/scratch/xvfb-run.EQUFbO’ ‘~/tmp/scratch/xvfb-run.Ewv9Fb’   ‘~/tmp/scratch/xvfb-run.GvYrlM’ ‘~/tmp/scratch/xvfb-run.H39GyH’   ‘~/tmp/scratch/xvfb-run.HwM5fC’ ‘~/tmp/scratch/xvfb-run.INxY0N’   ‘~/tmp/scratch/xvfb-run.LsaVJr’ ‘~/tmp/scratch/xvfb-run.M5mzJW’   ‘~/tmp/scratch/xvfb-run.NcBGdd’ ‘~/tmp/scratch/xvfb-run.Nrt7Xd’   ‘~/tmp/scratch/xvfb-run.NzOAIu’ ‘~/tmp/scratch/xvfb-run.OsymQJ’   ‘~/tmp/scratch/xvfb-run.R1LQ64’ ‘~/tmp/scratch/xvfb-run.SIKKQa’   ‘~/tmp/scratch/xvfb-run.U0UomF’ ‘~/tmp/scratch/xvfb-run.V2GocW’   ‘~/tmp/scratch/xvfb-run.VAypeE’ ‘~/tmp/scratch/xvfb-run.XHmJ4R’   ‘~/tmp/scratch/xvfb-run.XqG43D’ ‘~/tmp/scratch/xvfb-run.YQyPjQ’   ‘~/tmp/scratch/xvfb-run.fA1dG1’ ‘~/tmp/scratch/xvfb-run.fJHS6z’   ‘~/tmp/scratch/xvfb-run.g5MT2O’ ‘~/tmp/scratch/xvfb-run.h5mKjb’   ‘~/tmp/scratch/xvfb-run.hWbgHM’ ‘~/tmp/scratch/xvfb-run.ivUZ8y’   ‘~/tmp/scratch/xvfb-run.jlXIva’ ‘~/tmp/scratch/xvfb-run.jmCV0t’   ‘~/tmp/scratch/xvfb-run.lP3dEQ’ ‘~/tmp/scratch/xvfb-run.mfI8zp’   ‘~/tmp/scratch/xvfb-run.nVuNvc’ ‘~/tmp/scratch/xvfb-run.rohox9’   ‘~/tmp/scratch/xvfb-run.sJ7622’ ‘~/tmp/scratch/xvfb-run.sPFp8M’   ‘~/tmp/scratch/xvfb-run.soXKxT’ ‘~/tmp/scratch/xvfb-run.ugwQje’   ‘~/tmp/scratch/xvfb-run.vUUPR2’ ‘~/tmp/scratch/xvfb-run.xFEcME’   ‘~/tmp/scratch/xvfb-run.ylFglD’ ‘~/tmp/scratch/xvfb-run.z7W6JQ’
• DONE

Status: 1 NOTE