• using R Under development (unstable) (2026-07-31 r90332)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-08-01 17:39:39 UTC
• checking for file ‘scTenifoldNet/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘scTenifoldNet’ version ‘1.3’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/2s] NOTE Maintainer: ‘Daniel Osorio <dcosorioh@utexas.edu>’ Package CITATION file contains call(s) to old-style personList() or as.personList(). Please use c() on person objects instead. Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead.
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘scTenifoldNet’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/2s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/2s] OK
• checking whether the package can be unloaded cleanly ... [1s/3s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/2s] OK
• checking whether the namespace can be unloaded cleanly ... [2s/3s] OK
• checking loading without being on the library search path ... [1s/3s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [9s/13s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking examples ... [12s/15s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [4s/5s] OK   Running ‘testthat.R’ [4s/5s]
• checking PDF version of manual ... [4s/5s] OK
• checking HTML version of manual ... [1s/1s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0UA8K0’ ‘~/tmp/scratch/Rtmp0rgscf’   ‘~/tmp/scratch/Rtmp0sLMh7’ ‘~/tmp/scratch/Rtmp1Uqqno’   ‘~/tmp/scratch/Rtmp23FAJS’ ‘~/tmp/scratch/Rtmp2QIrV4’   ‘~/tmp/scratch/Rtmp3IBybJ’ ‘~/tmp/scratch/Rtmp4KgjS0’   ‘~/tmp/scratch/Rtmp4NH4nb’ ‘~/tmp/scratch/Rtmp4NZVmR’   ‘~/tmp/scratch/Rtmp4TFGzx’ ‘~/tmp/scratch/Rtmp5Ag8VU’   ‘~/tmp/scratch/Rtmp6mk4Ru’ ‘~/tmp/scratch/Rtmp7AIqCM’   ‘~/tmp/scratch/Rtmp7HWiAM’ ‘~/tmp/scratch/Rtmp8BxIdQ’   ‘~/tmp/scratch/Rtmp8OHWDI’ ‘~/tmp/scratch/Rtmp9KrM9W’   ‘~/tmp/scratch/Rtmp9cPZJW’ ‘~/tmp/scratch/RtmpABzdqG’   ‘~/tmp/scratch/RtmpAICYgn’ ‘~/tmp/scratch/RtmpAYHmsb’   ‘~/tmp/scratch/RtmpAcxW88’ ‘~/tmp/scratch/RtmpAscazB’   ‘~/tmp/scratch/RtmpAxHePZ’ ‘~/tmp/scratch/RtmpAyoGAp’   ‘~/tmp/scratch/RtmpBn6tG7’ ‘~/tmp/scratch/RtmpCjmeni’   ‘~/tmp/scratch/RtmpDUh1AH’ ‘~/tmp/scratch/RtmpE3Vclu’   ‘~/tmp/scratch/RtmpE5wbbO’ ‘~/tmp/scratch/RtmpEFiOCt’   ‘~/tmp/scratch/RtmpEHecXZ’ ‘~/tmp/scratch/RtmpEJzv16’   ‘~/tmp/scratch/RtmpGVaOxQ’ ‘~/tmp/scratch/RtmpGskKvX’   ‘~/tmp/scratch/RtmpHiUMah’ ‘~/tmp/scratch/RtmpI5ZN2w’   ‘~/tmp/scratch/RtmpI8TRo4’ ‘~/tmp/scratch/RtmpJchLCW’   ‘~/tmp/scratch/RtmpJddoMs’ ‘~/tmp/scratch/RtmpLikLB5’   ‘~/tmp/scratch/RtmpLjMZgB’ ‘~/tmp/scratch/RtmpMtG7qK’   ‘~/tmp/scratch/RtmpMxSSDX’ ‘~/tmp/scratch/RtmpN24STg’   ‘~/tmp/scratch/RtmpNA3Zri’ ‘~/tmp/scratch/RtmpNVaOnV’   ‘~/tmp/scratch/RtmpNrrW1p’ ‘~/tmp/scratch/RtmpO4KWsN’   ‘~/tmp/scratch/RtmpO66C4w’ ‘~/tmp/scratch/RtmpO9Ir35’   ‘~/tmp/scratch/RtmpOIGjJK’ ‘~/tmp/scratch/RtmpPBzORI’   ‘~/tmp/scratch/RtmpPSAiI1’ ‘~/tmp/scratch/RtmpPexEnA’   ‘~/tmp/scratch/RtmpQdMePW’ ‘~/tmp/scratch/RtmpRR5f0f’   ‘~/tmp/scratch/RtmpRV2V9X’ ‘~/tmp/scratch/RtmpRVBO0D’   ‘~/tmp/scratch/RtmpSKFDoy’ ‘~/tmp/scratch/RtmpSPo6PN’   ‘~/tmp/scratch/RtmpTbP1xw’ ‘~/tmp/scratch/RtmpTvcXge’   ‘~/tmp/scratch/RtmpUQNxcv’ ‘~/tmp/scratch/RtmpX5qwow’   ‘~/tmp/scratch/RtmpXOSLuY’ ‘~/tmp/scratch/RtmpXQQI5l’   ‘~/tmp/scratch/RtmpXSO00B’ ‘~/tmp/scratch/RtmpYp9qrC’   ‘~/tmp/scratch/RtmpaSjBhs’ ‘~/tmp/scratch/Rtmpc8GrEJ’   ‘~/tmp/scratch/RtmpcDgdgo’ ‘~/tmp/scratch/RtmpcRMhgO’   ‘~/tmp/scratch/RtmpdSaRd6’ ‘~/tmp/scratch/RtmpdsuJVi’   ‘~/tmp/scratch/RtmpebYR2h’ ‘~/tmp/scratch/RtmpeuVi4X’   ‘~/tmp/scratch/RtmpfH1nVI’ ‘~/tmp/scratch/RtmpfgVkes’   ‘~/tmp/scratch/Rtmpg7gUWi’ ‘~/tmp/scratch/RtmpgV4YLq’   ‘~/tmp/scratch/RtmpgiyMu5’ ‘~/tmp/scratch/RtmpgvTTn2’   ‘~/tmp/scratch/Rtmph49fXI’ ‘~/tmp/scratch/RtmphCGT6e’   ‘~/tmp/scratch/RtmphFamVj’ ‘~/tmp/scratch/RtmpheL5mb’   ‘~/tmp/scratch/Rtmpi3QCJA’ ‘~/tmp/scratch/RtmpjFKbty’   ‘~/tmp/scratch/RtmpjHX6Fz’ ‘~/tmp/scratch/RtmpjQwyPs’   ‘~/tmp/scratch/RtmpjdJlMw’ ‘~/tmp/scratch/RtmpjsfNfq’   ‘~/tmp/scratch/Rtmpk4Rhsr’ ‘~/tmp/scratch/RtmpkI3q0i’   ‘~/tmp/scratch/RtmpkSWnZr’ ‘~/tmp/scratch/RtmpkcHYp7’   ‘~/tmp/scratch/RtmpkxPwPt’ ‘~/tmp/scratch/RtmpmhkSwR’   ‘~/tmp/scratch/RtmpmmJvAZ’ ‘~/tmp/scratch/Rtmpn2yJMQ’   ‘~/tmp/scratch/RtmpnLD91s’ ‘~/tmp/scratch/RtmpnsRzti’   ‘~/tmp/scratch/RtmpoIJ6vV’ ‘~/tmp/scratch/RtmpobR5kG’   ‘~/tmp/scratch/RtmpovJkIY’ ‘~/tmp/scratch/RtmppPB6a5’   ‘~/tmp/scratch/RtmppmDHyK’ ‘~/tmp/scratch/RtmpqnKVkK’   ‘~/tmp/scratch/RtmprVPG6t’ ‘~/tmp/scratch/RtmprszPTI’   ‘~/tmp/scratch/Rtmps0qbrY’ ‘~/tmp/scratch/RtmptQWPFL’   ‘~/tmp/scratch/Rtmptbkr6q’ ‘~/tmp/scratch/Rtmpu22hJi’   ‘~/tmp/scratch/RtmpuJOtQf’ ‘~/tmp/scratch/RtmpuXzsu9’   ‘~/tmp/scratch/Rtmpx3uHo2’ ‘~/tmp/scratch/RtmpxjrtmE’   ‘~/tmp/scratch/RtmpxnDjrQ’ ‘~/tmp/scratch/RtmpzPUAQi’   ‘~/tmp/scratch/RtmpzTRO7C’ ‘~/tmp/scratch/Rtmpzw1qzt’   ‘~/tmp/scratch/xvfb-run.1d6KUg’ ‘~/tmp/scratch/xvfb-run.2hZQOo’   ‘~/tmp/scratch/xvfb-run.4BZQOz’ ‘~/tmp/scratch/xvfb-run.7grtBt’   ‘~/tmp/scratch/xvfb-run.7pFgZG’ ‘~/tmp/scratch/xvfb-run.8otdbY’   ‘~/tmp/scratch/xvfb-run.9jFCTT’ ‘~/tmp/scratch/xvfb-run.A5Htnw’   ‘~/tmp/scratch/xvfb-run.AkZWQ6’ ‘~/tmp/scratch/xvfb-run.B6YPwP’   ‘~/tmp/scratch/xvfb-run.C9uqfZ’ ‘~/tmp/scratch/xvfb-run.CaX5Tg’   ‘~/tmp/scratch/xvfb-run.DuywOO’ ‘~/tmp/scratch/xvfb-run.JY7GZv’   ‘~/tmp/scratch/xvfb-run.Jcao5G’ ‘~/tmp/scratch/xvfb-run.K7E0pU’   ‘~/tmp/scratch/xvfb-run.LZ1U9H’ ‘~/tmp/scratch/xvfb-run.LkBQmN’   ‘~/tmp/scratch/xvfb-run.LrqWqq’ ‘~/tmp/scratch/xvfb-run.M2zjgx’   ‘~/tmp/scratch/xvfb-run.M71Moz’ ‘~/tmp/scratch/xvfb-run.QFXB6y’   ‘~/tmp/scratch/xvfb-run.REAPQW’ ‘~/tmp/scratch/xvfb-run.RO78tn’   ‘~/tmp/scratch/xvfb-run.UGaVUt’ ‘~/tmp/scratch/xvfb-run.VvhEKS’   ‘~/tmp/scratch/xvfb-run.X5zYx2’ ‘~/tmp/scratch/xvfb-run.XkE429’   ‘~/tmp/scratch/xvfb-run.YDbTix’ ‘~/tmp/scratch/xvfb-run.ZFHB4K’   ‘~/tmp/scratch/xvfb-run.cHRm2u’ ‘~/tmp/scratch/xvfb-run.cs3nTR’   ‘~/tmp/scratch/xvfb-run.ex50Zd’ ‘~/tmp/scratch/xvfb-run.kTv0Th’   ‘~/tmp/scratch/xvfb-run.lXucAU’ ‘~/tmp/scratch/xvfb-run.mWmE3c’   ‘~/tmp/scratch/xvfb-run.nniJKL’ ‘~/tmp/scratch/xvfb-run.oKFlI7’   ‘~/tmp/scratch/xvfb-run.oyDXdM’ ‘~/tmp/scratch/xvfb-run.r5INGQ’   ‘~/tmp/scratch/xvfb-run.s6NcF8’ ‘~/tmp/scratch/xvfb-run.sWUUei’   ‘~/tmp/scratch/xvfb-run.uce9c5’ ‘~/tmp/scratch/xvfb-run.wbJeRR’   ‘~/tmp/scratch/xvfb-run.wi1Jgb’ ‘~/tmp/scratch/xvfb-run.xoa7zu’
• DONE

Status: 2 NOTEs