• using R Under development (unstable) (2026-08-01 r90334)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-08-02 17:38:12 UTC
• checking for file ‘scTenifoldNet/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘scTenifoldNet’ version ‘1.3’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/1s] NOTE Maintainer: ‘Daniel Osorio <dcosorioh@utexas.edu>’ Package CITATION file contains call(s) to old-style personList() or as.personList(). Please use c() on person objects instead. Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead.
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘scTenifoldNet’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/2s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the package can be unloaded cleanly ... [2s/2s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/2s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/2s] OK
• checking loading without being on the library search path ... [1s/2s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [9s/14s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking examples ... [12s/16s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [4s/6s] OK   Running ‘testthat.R’ [4s/5s]
• checking PDF version of manual ... [4s/6s] OK
• checking HTML version of manual ... [1s/1s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp09nkib’ ‘~/tmp/scratch/Rtmp0X93yB’   ‘~/tmp/scratch/Rtmp1AQCJE’ ‘~/tmp/scratch/Rtmp1oIQJk’   ‘~/tmp/scratch/Rtmp2LkE5U’ ‘~/tmp/scratch/Rtmp2OuRpo’   ‘~/tmp/scratch/Rtmp3CeCHU’ ‘~/tmp/scratch/Rtmp3chEYW’   ‘~/tmp/scratch/Rtmp4OHiX5’ ‘~/tmp/scratch/Rtmp546ZM2’   ‘~/tmp/scratch/Rtmp5EoqhP’ ‘~/tmp/scratch/Rtmp5VzAQP’   ‘~/tmp/scratch/Rtmp5zqLEF’ ‘~/tmp/scratch/Rtmp60onBI’   ‘~/tmp/scratch/Rtmp7CIsIg’ ‘~/tmp/scratch/Rtmp7Myipf’   ‘~/tmp/scratch/Rtmp7T5NOX’ ‘~/tmp/scratch/Rtmp7W8MMb’   ‘~/tmp/scratch/Rtmp8712qG’ ‘~/tmp/scratch/Rtmp8zsXk1’   ‘~/tmp/scratch/Rtmp98vPBf’ ‘~/tmp/scratch/Rtmp9GeE8J’   ‘~/tmp/scratch/Rtmp9b7wQx’ ‘~/tmp/scratch/RtmpBM55WS’   ‘~/tmp/scratch/RtmpBSc50B’ ‘~/tmp/scratch/RtmpC6vN2U’   ‘~/tmp/scratch/RtmpCCtSFx’ ‘~/tmp/scratch/RtmpCt5j1U’   ‘~/tmp/scratch/RtmpE4YmNj’ ‘~/tmp/scratch/RtmpEk0Oti’   ‘~/tmp/scratch/RtmpEucO8u’ ‘~/tmp/scratch/RtmpFVOgUS’   ‘~/tmp/scratch/RtmpFVkSRl’ ‘~/tmp/scratch/RtmpFdh0Dj’   ‘~/tmp/scratch/RtmpGP6DAd’ ‘~/tmp/scratch/RtmpGrubRG’   ‘~/tmp/scratch/RtmpHWP4mv’ ‘~/tmp/scratch/RtmpHcHSu5’   ‘~/tmp/scratch/RtmpIGlAsI’ ‘~/tmp/scratch/RtmpIK1dVE’   ‘~/tmp/scratch/RtmpJMACVJ’ ‘~/tmp/scratch/RtmpLEIU3U’   ‘~/tmp/scratch/RtmpM76XFG’ ‘~/tmp/scratch/RtmpMMdiZK’   ‘~/tmp/scratch/RtmpMnztlR’ ‘~/tmp/scratch/RtmpMsMMJa’   ‘~/tmp/scratch/RtmpN1lvaD’ ‘~/tmp/scratch/RtmpOkOn5Z’   ‘~/tmp/scratch/RtmpP4cyIM’ ‘~/tmp/scratch/RtmpPAFGGk’   ‘~/tmp/scratch/RtmpPRsRAF’ ‘~/tmp/scratch/RtmpPY3vKA’   ‘~/tmp/scratch/RtmpQ9XuoH’ ‘~/tmp/scratch/RtmpQWOWw5’   ‘~/tmp/scratch/RtmpRAhis4’ ‘~/tmp/scratch/RtmpRTr60C’   ‘~/tmp/scratch/RtmpSWd6z1’ ‘~/tmp/scratch/RtmpSwQnOj’   ‘~/tmp/scratch/RtmpSwv6TX’ ‘~/tmp/scratch/RtmpTjy7vK’   ‘~/tmp/scratch/RtmpUCpOJj’ ‘~/tmp/scratch/RtmpUYhXWf’   ‘~/tmp/scratch/RtmpUbUs3Q’ ‘~/tmp/scratch/RtmpVRZvlN’   ‘~/tmp/scratch/RtmpX0qNXp’ ‘~/tmp/scratch/RtmpY1JiKD’   ‘~/tmp/scratch/RtmpY9sD0V’ ‘~/tmp/scratch/RtmpYM41I0’   ‘~/tmp/scratch/RtmpYj8lX2’ ‘~/tmp/scratch/RtmpYy8kfN’   ‘~/tmp/scratch/RtmpauGIzJ’ ‘~/tmp/scratch/RtmpbFvZIO’   ‘~/tmp/scratch/RtmpbiOIbH’ ‘~/tmp/scratch/RtmpcAL3Aj’   ‘~/tmp/scratch/RtmpcDbQie’ ‘~/tmp/scratch/Rtmpcmx7oB’   ‘~/tmp/scratch/RtmpdO2DKB’ ‘~/tmp/scratch/RtmpeXI8t0’   ‘~/tmp/scratch/RtmpejbBxS’ ‘~/tmp/scratch/RtmpfbcSU5’   ‘~/tmp/scratch/Rtmpg1uRQk’ ‘~/tmp/scratch/RtmpgyZzfG’   ‘~/tmp/scratch/RtmphcZ9Ai’ ‘~/tmp/scratch/Rtmpiztj36’   ‘~/tmp/scratch/RtmpjeWrL4’ ‘~/tmp/scratch/RtmpjuVdHB’   ‘~/tmp/scratch/Rtmpk7p6FR’ ‘~/tmp/scratch/RtmpkGtJVn’   ‘~/tmp/scratch/RtmpkZ68o9’ ‘~/tmp/scratch/RtmpkxbZut’   ‘~/tmp/scratch/Rtmpl3Hn5r’ ‘~/tmp/scratch/RtmplNeBUO’   ‘~/tmp/scratch/RtmplxPGih’ ‘~/tmp/scratch/RtmplzOyxx’   ‘~/tmp/scratch/RtmpmYyoLj’ ‘~/tmp/scratch/RtmpmtWzmI’   ‘~/tmp/scratch/RtmpnpY9YL’ ‘~/tmp/scratch/RtmpnwMYCf’   ‘~/tmp/scratch/RtmpooNEJv’ ‘~/tmp/scratch/Rtmpp4D4cO’   ‘~/tmp/scratch/RtmppKcUgD’ ‘~/tmp/scratch/RtmppfVy5n’   ‘~/tmp/scratch/Rtmppkxp1N’ ‘~/tmp/scratch/RtmpqECkwL’   ‘~/tmp/scratch/RtmpqR4m7I’ ‘~/tmp/scratch/RtmpqWk0oF’   ‘~/tmp/scratch/RtmprOaLt7’ ‘~/tmp/scratch/Rtmpspbsx1’   ‘~/tmp/scratch/RtmptMxYmJ’ ‘~/tmp/scratch/RtmptnoNXn’   ‘~/tmp/scratch/RtmptoHJjM’ ‘~/tmp/scratch/Rtmpu3bgy6’   ‘~/tmp/scratch/Rtmpuh5I0Q’ ‘~/tmp/scratch/Rtmpvs6B5j’   ‘~/tmp/scratch/Rtmpw4q7he’ ‘~/tmp/scratch/RtmpwRBGE7’   ‘~/tmp/scratch/RtmpwjR5ZO’ ‘~/tmp/scratch/RtmpxyCN7q’   ‘~/tmp/scratch/RtmpzDQc58’ ‘~/tmp/scratch/RtmpzGlma1’   ‘~/tmp/scratch/RtmpzV0aHM’ ‘~/tmp/scratch/xvfb-run.2L80He’   ‘~/tmp/scratch/xvfb-run.3HOjTw’ ‘~/tmp/scratch/xvfb-run.675h42’   ‘~/tmp/scratch/xvfb-run.8CJC91’ ‘~/tmp/scratch/xvfb-run.B5F7Mj’   ‘~/tmp/scratch/xvfb-run.C6qH3W’ ‘~/tmp/scratch/xvfb-run.FgwdQZ’   ‘~/tmp/scratch/xvfb-run.GZU6D9’ ‘~/tmp/scratch/xvfb-run.HNroWW’   ‘~/tmp/scratch/xvfb-run.ILklUP’ ‘~/tmp/scratch/xvfb-run.Luodmq’   ‘~/tmp/scratch/xvfb-run.M9oAi2’ ‘~/tmp/scratch/xvfb-run.MtA1iZ’   ‘~/tmp/scratch/xvfb-run.SiFwzq’ ‘~/tmp/scratch/xvfb-run.USDWDP’   ‘~/tmp/scratch/xvfb-run.UzeOHW’ ‘~/tmp/scratch/xvfb-run.VSySiD’   ‘~/tmp/scratch/xvfb-run.VjbY82’ ‘~/tmp/scratch/xvfb-run.WwINH8’   ‘~/tmp/scratch/xvfb-run.XR4gII’ ‘~/tmp/scratch/xvfb-run.XXUpcJ’   ‘~/tmp/scratch/xvfb-run.Xsjfbn’ ‘~/tmp/scratch/xvfb-run.bvLRK2’   ‘~/tmp/scratch/xvfb-run.dgOVY6’ ‘~/tmp/scratch/xvfb-run.edqyO5’   ‘~/tmp/scratch/xvfb-run.es9jFl’ ‘~/tmp/scratch/xvfb-run.gbPPiu’   ‘~/tmp/scratch/xvfb-run.gpfUnk’ ‘~/tmp/scratch/xvfb-run.hj31xn’   ‘~/tmp/scratch/xvfb-run.lSHK6s’ ‘~/tmp/scratch/xvfb-run.lYvi1M’   ‘~/tmp/scratch/xvfb-run.mc7oQ4’ ‘~/tmp/scratch/xvfb-run.nIhysb’   ‘~/tmp/scratch/xvfb-run.ooSmpG’ ‘~/tmp/scratch/xvfb-run.ouL3hs’   ‘~/tmp/scratch/xvfb-run.tHX6NY’ ‘~/tmp/scratch/xvfb-run.tw8H1e’   ‘~/tmp/scratch/xvfb-run.u23GPP’ ‘~/tmp/scratch/xvfb-run.uIKeMj’   ‘~/tmp/scratch/xvfb-run.x9YdRp’ ‘~/tmp/scratch/xvfb-run.zOz9aB’   ‘~/tmp/scratch/xvfb-run.zWMQPq’ ‘~/tmp/scratch/xvfb-run.ztDUli’
• DONE

Status: 2 NOTEs